These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7280#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 890 fasta sequence [CCGCCCACGCGTCCGGTGGCGAAGAAAATCAACACGAAAGGAGAGGAAATAAC-TTTTTTTTTGTTTATTTAACTTTTGCTGCAAATAGTGCCTTAATTTATAATCGAAAATCTGTTCATCGTTTACGTCGTCATCGAGTGCCTTATCAATACTTTGACCAGATTACCGTCCTCTGCAAATAATCAACGTACCACCGTCCAGGTGCCGAAAGAGCGTCACCACCAACAACATGTCGCTCGGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCAACTCCAACGGGCAGCTCTGGCATACGCAATGCTTTGTCTGCGCGCAATGTTTCCGCCAGTTCCAGGACGGCATATTCTACGAGTTCGAGGGCCGGAAGTACTGCGAGAAGGACTTCCACATCCTGTTTGCGCCGTGCTGTGCCAAGTGCAACAACTTCGTGATCGGGCGCGTGATCAAGGCGATGGCGGCGAACTGGCATCCGCAGTGCTTCACCTGCGAGCGCTGCAGCATTCCGCTGGCCGATTCGGGCTTCATACGCAACCAAAACCGGGCCCTGTGCCACGATTGCAATCGCAAGGAGAAGGAGGTCGGGCTCGGCAAGCTCGTCTGCAACAAGTGCCATGGCATTATTGACGATGCGCCACTGCGC-TT-CCGGGGTGAAGTTTACCACGGGTATCACTTCAACTGTACGTCCTGCGGTGCCGAACTGGACTCGTCGGCCCGGGAGGTGAAGAACCGCAGCGGGTATGCCGCCAACGACATGAACGAGCTGTACTGCTTGCGATGCCACGATCGCATGGGCATCCCGATCTGTGGTGCCTGTCGCCGGCCGATANANGAGCGGGTTGTCACCGCGCTGGGAAAGCATTGGC] [+] EMBL BM630724 [CCGCCCACGCGTCCGGTGGCGAAGAAAATCAACACGAAAGGAGAGGAAATAACTTTTTTTTTTGTTTATTTAACTTTTGCTGCAAATAGTGCCTTAATTTATAATCGAAAATCTGTTCATCGTTTACGTCGTCATCGAGTGCCTTATCAATACTTTGACCAGATTACCGTCCTCTGCAAATAATCAACGTACCACCGTCCAGGTGCCGAAAGAGCGTCACCACCAACAACATGTCGCTCGGCACGATGCACTGCACGCGCTGCGACGAAGGCTTCGAACCGCACGAGCGCATCGTCAACTCCAACGGGCAGCTCTGGCATACGCAATGCTTTGTCTGCGCGCAATGTTTCCGCCAGTTCCAGGA ] [+] EMBL BM588954 [ CCGGTGGCGAAGAAAATCAACACGAAAGGAGAGGAAATAAC TTTTTTTTTGTTTATTTAACTTTTGCTGCAAATAGTGCCTTAATTTATAATCGAAAATCTGTTCATCGTTTACGTCGTCATCGAGTGCCTTATCAATACTTTGACCAGATTACCGTCCTCTGCAAATAATCAACGTACCACCGTCCAGGTGCCGAAAGAGCGTCACCACCAACAACATGTCGCTCGGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCAACTCCAACGGGCAGCTCTGGCATACGCAATGCTTTGTCTGCGCGCAATGTTTCCGCCAGTTCCAGGACGGCATATTCTACGAGTTCGAGGGCCGGAAGTACTGCGAGAAGGACTTCCACATCCTGTTTGCGCCGTGCTGTGCCAAGTGCAACAACTTCGTGATCGGGCGCGTGATCAAGGCGATGGCGGCGAACTGGCATCCGCAGTGCTTCACCTGCGAGCGCTGCAGCATTCCGCTGGCCGATTCGGGCTTCATACGCAACCAAAACCGGGCCCTGTGCCACGATTGCAATCGCAAGGAGAAGGAGGTCGGGCTCGGCAAGCTCGTCTGCAACAAGTGCCATGGCATTATTGACGATGCGCCACTGCGCTTT CCGGGGTG ] [+] EMBL BM649754 [ ccgGGCGAAGAAAATCAACACGAAAGGAGATGAAATAAC TTTTTTTTTGTTTATTTAACTTTTGCTGCAAATAGTGCCTTAATTT TTATCGAAAATCTGTTCATCGTTTACGTCGTCATCGAGTGCCTTATCAATACTTTGACCAGATTACCGTCCTCTGCAAATAATCAACGTACCACCGTCCAGGTGCCGAAAGAGCGTCACCACCAACAACATGTCGCTCGGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCAACTCCAACGGGCAGCTCTGGCATACGCAATGCTTTGTCTGCGCGCAATGTTTTCGCCAGTTCCAGGACGGCATATTCTACGAGTTCGAGGGCCGGAAGTACTGCGAGAAGGACTTCCACATCCTGTTTGCGCCGTGCTGTGCGAAGTGCAACAACTTCGTGATCGGGCGCGTGATCAAGGCGATGGCGGCGAACTGGCATCCGCAGTGCTTCACCTGCGAGCGCTGCAGCATTCCGCTGGCCGATTCGGGCTTCATACGCAACCAAAACCGGGCCCTGTGCCACGATTGCAATCGCAAGGAGAAGGAGGTCGGGCTCGGCAAGCTCGTCTGCAACAAGTGCCATGGCATTATCGACGATGCGCCACTGCGC TTACCGGGGTGAAGTTTACCACGGGTATCACTTC ] [+] EMBL BX622034 [ gGTTTACGTCGTCATCGAGTGCCTTATCAATACTTTGACCAGATTACCGTCCTCTGCAAATAATCAACGTACCACCGTCCAGGTGCCGAAAGAGCGTCACCACCAACAACATGTCGCTCGGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCAACTCCAACGGGCAGCTCTGGCATACGCAATGCTTTGTCTGCGCGCAATGTTTCCGCCAGTTCCAGGACGGCATATTCTACGAGTTCGAGGGCCGGAAGTACTGCGAGAAGGACTTCCACATCCTGTTTGCGCCGTGCTGTGCCAAGTGCAACAACTTCGTGATCGGGCGCGTGATCAAGGCGATGGCGGCGAACTGGCATCCGCAGTGCTTCACCTGCGAGCGCTGCAGCATTCCGCTGGCCGATTCGGGCTTCATACGCAACCAAAACCGGGCCCTGTGCCACGATTGCAATCGCAAGGAGAAGGAGGTCGGGCTCGGCAAGCTCGTCTGCAACAAGTGCCATGGCATTATTGACGATGCGCCACTGCGC TT CCGGGGTGAAGTTTACCACGGGTATCACTTCAACTGTACGTCCTGCGGTGCCGAACTGGACTCGTCGGCCCGGGAGGTGAAGAACCGCAGCGGGTATGCCGCCAACGACATGAACGAGCTGTACTGCTTGCGATGCCACGATCGCATGGGCATCCCGATCTGTGGTGCCTGTCGCCGGCCGATANANGAGCGGGTTGTCACCGCGCTGGGAAAGCATTGGC] [-] EMBL AGA284149 [ ATCCTGTTTGCGCCGTGCTGTGCCAAGTGCAACAACTTCGTAATCGGGCGCGTGATCAAGGCGATGGCGGCGAACTGGCATCCGCAGTGCTTCACCTGCGAGCGCTGCAGCATTCCGCTGGCCGATTCGGGCTTCATACGCAACCAAAACCGGGCCCTGTGCCACGATTGCAATCGCAAGGAGAAGGAGGTCGGGCTCGGCAAGCTCGTCTGCAACAAGTGCCATGGCATTATCGACGATGCGCCACTGCGC TT CCGGGGTGAAGTTTACCACGGGTATCACTTCAACTGTACGTCCTGCGGTGCCGAACTGGACTCGTCGGCCCGGGAGGTGAAGAACCGCAGCGGGTATGCCGCCAACGACATGAACGAGCTGTACTGCCTGCGATGCCACGATCGCATGGGCATCCCGATCTGTGGTGCCTGT ] consensusID : consensus_7280#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [CCGGGAAATAACTTTTTTTTTGTTTATTTAACTTTTGCTGCAAATAGTGCCTTAATTTATAATCGAAAATCTGTTCATCGTTTACGTCGTCATCGAGTGCCTTATCAATACTTTGACCAGATTACCGTCCTCTGCAAATAATCAACGTACCACCGTCCAGGTGCCGAAAGAGTTTTTCACATCCGTTGGATCACGTCCAAAAAGTACTTCCTTTTACGGAAATCAATCACCCCGGGGGGAGAGATTCGTTGTTGCCAAATTTAGAACATGGCTCCAGTTGCAGGCGTCACCACCAACAACATGTCGCTCGGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCAACTCCAACGGGCAGCTCTGGCATACGCAATGCTTTGTCTGCGCGCAATGTTTCCGCCAGTTCCAGGACGGCATATTCTACGAGTTCGAGGGCCGGAAGTACTGCGAGAAGGACTTCCACATCCTGTTTGCGCCGTGCTGTGCCAAGTGCAACAACTTCGTGATCGGGCGCGTGATCAAGGCGATGGCGGCGAACTGGCATCCGCAGTGCTTCACCTGCGAGCGCTGCAGCATTCC] [+] EMBL BM628016 [CCGGGAAATAACTTTTTTTTTGTTTATTTAACTTTTGCTGCAAATAGTGCCTTAATTTATAATCGAAAATCTGTTCATCGTTTACGTCGTCATCGAGTGCCTTATCAATACTTTGACCAGATTACCGTCCTCTGCAAATAATCAACGTACCACCGTCCAGGTGCCGAAAGAGTTTTTCACATCCGTTGGATCACGTCCAAAAAGTACTTCCTTTTACGGAAATCAATCACCCCGGGGGGAGAGATTCGTTGTTGCCAAATTTAGAACATGGCTCCAGTTGCAGGCGTCACCACCAACAACATGTCGCTCGGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCAACTCCAACGGGCAGCTCTGGCATACGCAATGCTTTGTCTGCGCGCAATGTTTCCGCCAGTTCCAGGACGGCATATTCTACGAGTTCGAGGGCCGGAAGTACTGCGAGAAGGACTTCCACATCCTGTTTGCGCCGTGCTGTGCCAAGTGCAACAACTTCGTGATCGGGCGCGTGATCAAGGCGATGGCGGCGAACTGGCATCCGCAGTGCTTCACCTGCGAGCGCTGCAGCATTCC] consensusID : consensus_7280#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence [GTTCGCATCAAGTAGGCCCAGCAAGAACGTAGAGACCGAGTACCACCTACCTAGATATCGTCCCACCGTACCGTGCAAGGTCTTTTTGTATGGTTACCATCTCGAGTTTTAGTGACTTTGCAATACACCACGCCAAGTGGGATCGTAAAGATATCGAAACAGTGTTGATAATTCGACGCAACTTACACACGCTGTACACCCCTTTTTTGTAGTTTTTCACATCCGTTGGATCACGTCCAAAAAGTACTTCCTTTTACGGAAATCGATCACCCCGGGGGGAGAGATTCGTTGTTGCCAAATTTAGAACATGGCTCCAGTTGCAGGCGTCACCACCAACAACATGTCGCTCCGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCAACTCCAACGGGCAGCTCTG] [+] EMBL AGA285445 [GTTCGCATCAAGTAGGCCCAGCAAGAACGTAGAGACCGAGTACCACCTACCTAGATATCGTCCCACCGTACCGTGCAAGGTCTTTTTGTATGGTTACCATCTCGAGTTTTAGTGACTTTGCAATACACCACGCCAAGTGGGATCGTAAAGATATCGAAACAGTGTTGATAATTCGACGCAACTTACACACGCTGTACACCCCTTTTTTGTAGTTTTTCACATCCGTTGGATCACGTCCAAAAAGTACTTCCTTTTACGGAAATCGATCACCCCGGGGGGAGAGATTCGTTGTTGCCAAATTTAGAACATGGCTCCAGTTGCAGGCGTCACCACCAACAACATGTCGCTCCGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCAACTCCAACGGGCAGCTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7280#0 CCGCCCACGCGTCCGGTGGCGAAGAAAATCAACACGAAAGGAGAGGA-AATAACTTTTTT 59 consensus_7280#1 -----------------------------------------CCGGGA-AATAACTTTTTT 18 consensus_7280#2 ----------GTTCG-CATCAAGTAGGCCCAGCAAGAACGTAGAGACCGAGTACCACCTA 49 * * ** * consensus_7280#0 TTTGTTTATTTAACTTTTGCTGCAAATAGTGCCTTAATTTATAATCGAAAATCTGTTCAT 119 consensus_7280#1 TTTGTTTATTTAACTTTTGCTGCAAATAGTGCCTTAATTTATAATCGAAAATCTGTTCAT 78 consensus_7280#2 CCTAGATATCGTCCCACCGTACCGTGCAAGGTCTTTTTGTATGGTTACCATCTCGAGTTT 109 * *** * * * * * *** * *** * * * * consensus_7280#0 CGTTTACGTCGTCATCGAGTGC-CTTATCAATACTTTGACCAGATTACCGTCCTCTGCAA 178 consensus_7280#1 CGTTTACGTCGTCATCGAGTGC-CTTATCAATACTTTGACCAGATTACCGTCCTCTGCAA 137 consensus_7280#2 TAGTGACTTTGCAATACACCACGCCAAGTGGGATCGTAA--AGATATCGAAACAGTGTTG 167 * ** * * ** * * * * * * * **** * * ** consensus_7280#0 ATAAT------CAACGTAC---CACCGTCCAGGTGCCGAAAG-AG--------------- 213 consensus_7280#1 ATAAT------CAACGTAC---CACCGTCCAGGTGCCGAAAG-AGTTTTTCACATCCGTT 187 consensus_7280#2 ATAATTCGACGCAACTTACACACGCTGTACACCCCTTTTTTGTAGTTTTTCACATCCGTT 227 ***** **** *** * * ** ** * ** consensus_7280#0 ------------------------------------------------------------ consensus_7280#1 GGATCACGTCCAAAAAGTACTTCCTTTTACGGAAATCAATCACCCCGGGGGGAGAGATTC 247 consensus_7280#2 GGATCACGTCCAAAAAGTACTTCCTTTTACGGAAATCGATCACCCCGGGGGGAGAGATTC 287 consensus_7280#0 -------------------------------------CGTCACCACCAACAACATGTCGC 236 consensus_7280#1 GTTGTTGCCAAATTTAGAACATGGCTCCAGTTGCAGGCGTCACCACCAACAACATGTCGC 307 consensus_7280#2 GTTGTTGCCAAATTTAGAACATGGCTCCAGTTGCAGGCGTCACCACCAACAACATGTCGC 347 *********************** consensus_7280#0 TCGGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCA 296 consensus_7280#1 TCGGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCA 367 consensus_7280#2 TCCGCACGATGCACTGCACGCGCTGTGACGAAGGCTTCGAACCGCACGAGCGCATCGTCA 407 ** ********************************************************* consensus_7280#0 ACTCCAACGGGCAGCTCTGGCATACGCAATGCTTTGTCTGCGCGCAATGTTTCCGCCAGT 356 consensus_7280#1 ACTCCAACGGGCAGCTCTGGCATACGCAATGCTTTGTCTGCGCGCAATGTTTCCGCCAGT 427 consensus_7280#2 ACTCCAACGGGCAGCTCTG----------------------------------------- 426 ******************* consensus_7280#0 TCCAGGACGGCATATTCTACGAGTTCGAGGGCCGGAAGTACTGCGAGAAGGACTTCCACA 416 consensus_7280#1 TCCAGGACGGCATATTCTACGAGTTCGAGGGCCGGAAGTACTGCGAGAAGGACTTCCACA 487 consensus_7280#2 ------------------------------------------------------------ consensus_7280#0 TCCTGTTTGCGCCGTGCTGTGCCAAGTGCAACAACTTCGTGATCGGGCGCGTGATCAAGG 476 consensus_7280#1 TCCTGTTTGCGCCGTGCTGTGCCAAGTGCAACAACTTCGTGATCGGGCGCGTGATCAAGG 547 consensus_7280#2 ------------------------------------------------------------ consensus_7280#0 CGATGGCGGCGAACTGGCATCCGCAGTGCTTCACCTGCGAGCGCTGCAGCATTCCGCTGG 536 consensus_7280#1 CGATGGCGGCGAACTGGCATCCGCAGTGCTTCACCTGCGAGCGCTGCAGCATTCC----- 602 consensus_7280#2 ------------------------------------------------------------ consensus_7280#0 CCGATTCGGGCTTCATACGCAACCAAAACCGGGCCCTGTGCCACGATTGCAATCGCAAGG 596 consensus_7280#1 ------------------------------------------------------------ consensus_7280#2 ------------------------------------------------------------ consensus_7280#0 AGAAGGAGGTCGGGCTCGGCAAGCTCGTCTGCAACAAGTGCCATGGCATTATTGACGATG 656 consensus_7280#1 ------------------------------------------------------------ consensus_7280#2 ------------------------------------------------------------ consensus_7280#0 CGCCACTGCGCTTCCGGGGTGAAGTTTACCACGGGTATCACTTCAACTGTACGTCCTGCG 716 consensus_7280#1 ------------------------------------------------------------ consensus_7280#2 ------------------------------------------------------------ consensus_7280#0 GTGCCGAACTGGACTCGTCGGCCCGGGAGGTGAAGAACCGCAGCGGGTATGCCGCCAACG 776 consensus_7280#1 ------------------------------------------------------------ consensus_7280#2 ------------------------------------------------------------ consensus_7280#0 ACATGAACGAGCTGTACTGCTTGCGATGCCACGATCGCATGGGCATCCCGATCTGTGGTG 836 consensus_7280#1 ------------------------------------------------------------ consensus_7280#2 ------------------------------------------------------------ consensus_7280#0 CCTGTCGCCGGCCGATANANGAGCGGGTTGTCACCGCGCTGGGAAAGCATTGGC 890 consensus_7280#1 ------------------------------------------------------ consensus_7280#2 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||