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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7289#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1504 fasta sequence
[CGGGGGCTGTGGCGGGGCTACCCGGGCATCGTGACGCGCACCGCCGTCGGTTCGTCCGCCCAGCTCGCCACGTTCTCCACCTGCAAGGACCTGTTCGGGCAGTTCGAGTGGGCGCCGACTCGGTCGCGGTGAACGCGTTCGCCGCCAGCATGGTGAGCGGGTTCTTTACCTGCGTCTTCATGTCACCGTTCGACGTGATCGCGACGCGGCTCTTCAACCAGGGTGTCGATGCGAACGGGCGCGGATTGCTCTACCGGAGCGTGGCCGACTGCTTCACCAAAACGCTCCGGACCGAGGGCCTGCACGGGCTGTACAAGGGGTTCGTGCCGAACTACTGGGCATGCGCGCCCCACACCATCCTCAATCTGACGTTCTGGGATCAGTTCAAGGCGTGGCGTGATCTCTACTACGGATACTAGAGCAAGCAATACAACTAATGTTTAGAGCTAGAGAATTTTTGTTGCTTATCAGCCGGCGGAGAGTCGAGCGGTCGCGTGGTTCATTGGTACGGCGGCTCGGTTAGCACCCGACAGGTCGTGCGATCAAATCTAATCGGCGGAGAGAGAGTGGATTTCCAGCGTGTTAAGGAGAATGAATGCTGCTGCACCGCAGAAGCAGCCAAAACGAAACTAACACAACAAAAAAACCGAGTTTTGCCTAACGTAGTCTAAGTCTTCAACACAATTTGTGCGATTTTGCTGTGTTTTTTTTTTTCTTCTCTTTTTTATTATGATTACCACTAGAATCATTACGCGTAACGCATCATATGCTACCAGTACTACTTAAAACTAGAGGCTTCTGAACAAACAAAAAAATAGGCAAAAATAAAAAG-AAAAAAAACCGCTGAGCATGTGCTATGTTCGTTCGCAGCTGCAAGTCGGGGGTGTGTCGAACGACACAAGTCTGAGCCCTTTCTTTAAACTTTCAATTTGTTTCGTATGTGTGTCTGTGTGCGATTATTTGTACACCAACATTAACAACAACAAAAAGGGATGCAAATTTTCT------GCAGTTTGCCCTTTTCGCCACCTACTGCTGCTGCTGCTGCTGCTGCTGTTCCTCCTTCCCGGCCGCTTTCGGGTGTGCCGCGACGGATCCACCACCACCGCCCACCGTTTGCGGCTTGTAAATGCCGAGCGTCTGGAGCAGGGCGGTCGGGGACGGATCCCGCCCGCGGAAGCGCCGGAACACCTCGCCCGGATGGCAGCCGCCGCCGAGCGCCAGGAACGTGTCGCGGAACCGGCGGCCCACCTCCTGCCGGGCGGCCGGTTCCTTCGCCTCCGCGAACGCGCTGTACACGTCGGCCGCGATCATGCGCGACCAGAGGTGGCCGTAGTAGGCGGCACCCCAGTCGCCGGACGCGATCGCGACCAGCGAGCACGGATGGGCGTCCTTCCGGTCGAGCGGGAACGGGTGGTAGTGCGGGTACAGCTTGCGCATCACGTCCAGCCAGTAGTCGCTGGTCAGGTGCAGCTGCAGGTCGAGATTGGCCAGGTAGAGCTCGCGG]
[-] EMBL CNS08ERY [CGGGGGCTGTGGCGGGGCTACCCGGGCATCGTGACGCGCACCGCCGTCGGTTCGTCCGCCCAGCTCGCCACGTTCTCCACCTGCAAGGACCTGTTCGGGCAGTTCGAGTGGGCGCCGACTCGGTCGCGGTGAACGCGTTCGCCGCCAGCATGGTGAGCGGGTTCTTTACCTGCGTCTTCATGTCACCGTTCGACGTGATCGCGACGCGGCTCTTCAACCAGGGTGTCGATGCGAACGGGCGCGGATTGCTCTACCGGAGCGTGGCCGACTGCTTCACCAAAACGCTCCGGACCGAGGGCCTGCACGGGCTGTACAAGGGGTTCGTGCCGAACTACTGGGCATGCGCGCCCCACACCATCCTCAATCTGACGTTCTGGGATCAGTTCAAGGCGTGGCGTGATCTCTACTACGGATACTAGAGCAAGCAATACAACTAATGTTTAGAGCTAGAGAATTTTTGTTGCTTATCAGCCGGCGGAGAGTCGAGCGGTCGCGTGGTTCATTGGTACGGCGGCTCGGTTAGCACCCGACAGGTCGTGCGATCAAATCTAATCGGCGGAGAGAGAGTGGATTTCCAGCGTGTTAAGGAGAATGAATGCTGCTGCACCGCAGAAGCAGCCAAAACGAAACTAACACAACAAAAAAACCGAGTTTTGCCTAACGTAGTCTAAGTCTTCAACACAATTTGTGCGATTTTGCTGTGTTTTTTTTTTTCTTCTCTTTTTTATTATGATTACCACTAGAATCATTACGCGTAACGCATCATATGCTACCAGTACTACTTAAAACTAGAGGCTTCTGAACAAACCAAAAAATAGGCAAAAA ]
[+] EMBL BM584915 [ CAAAACGAAACTAACACAAC AAAAAACCGAGTTTTGCCTAACGTAGTCTAAGTCTTCAACACAATTTGTGCGATTTTGCTGTG TTTTTTTTTCTTCTCTTTTTTATTATGATTACCACTAGAATCATTACGCGTAACGCATCATATGCTACCAGTACTACTTAAAACTAGAGGCTTCTGAACAAACAAAAAAATAGGCAAAAATAAAAAGAAAAAAAAACCGC ]
[+] EMBL AGA284198 [ TTTTTCTTCTCTTTTTTATTATGATTACCACTAGAATCATTACGCGTAACGCATCATATGCTACCAGTACTACTTAAAACTAGAGGCTTCTGAACAAACAAAAAAATAGGCAAAAATAAAAAG AAAAAAAACCGCTGAGCATGTGCTATGTTCGTTCGCAGCTGCAAGTCGGGGGTGTGTCGAACGACACAAGTCTGAGCCCTTTCTTTAAACTTTCAATTTGTTTCGTATGTGTGTCTGTGTGCGATTATTTGTACACCAACATTAACAACAACAAAAAGGGATGCAAATTTTCT GCAGTTTGCCCTTTTCGCCACCTACTGCTGCTGCTGCTGCTGCTGCTGTTCCTCCTTCCCGGCCGCTT ]
[-] EMBL BX615306 [ CTTCTGAACAAACAAAAAAATAGGCAAAAATAAAAAG AAAAAAAACCGCTGAGCATGTGCTATGTTCGTTCGCAGCTGCAAGTCGGGGGTGTGTCGAACGACACAAGTCTGAGCCCTTTCTTTAAACTTTCAATTTGTTTCGTATGTGTGTCTGTGTGCGATTATTTGTACACCAACATTAACAACAACAAAAAGGGATGCAAATTTTCT GCAGTTTGCCCTTTTCGCCACCTACTGCTGCTGCTGCTGCTGCTGCTGTTCCTCCTTCCCGGCCGCTTTCGGGTGTGCCGCGACGGATCCACCACCACCGCCCACCGTTTGCGGCTTGTAAATGCCGAGCGTCTGGAGCAGGGCGGTCGGGGACGGATCCCGCCCGCGGAAGCGCCGGAACACCTCGCCCGGATGGCAGCCGCCGCCGAGCGCCAGGAACGTGTCGCGGAACCGGCGGCCCACCTCCTGCCGGGCGGCCGGTTCCTTCGCCTCCGCGAACGCGCTGTACACGTCGGCCGCGATCATGCGCGACCAGAGGTGGCCGTAGTAGGCGGCACCCCAGTCGCCGGACGCGATCGCGACCAGCGAGCACGGATGGGCGTCCTTCCGGTCGAGCGGGAACGGGTGGTAGTGCGGGTACAGCTTGCGCATCACGT ]
[+] EMBL CNS08KP6 [ GTGCGATTATTTGTACACCAACATTAACAACAACAAAAAGGGATGCAAATTTTCTGCAAACGCAGTTTCGCCTTTTCGCCACCTACTGCTGCTGCTGCTGCTGCTGCTGTTCCTCCTTCCCGGCCGCTTTCGGGTGTGCCGCGGCGGATCCACCACCACCGCCCACCGTTTGCGGTTTGTAAATGCCGAGCGTCTGGAGCAGGGCGGTCGGGGACGGATCCCGCCCGCGGAAGCGCCGGAACACCTCGCCCGGATGGC ]
[-] EMBL AGA285496 [ AGCCGCCGCCGAGCGCCAGGAACGTGTCGCGGAACCGGCGGCCCACCTCCTGCCGGGCGGCCGGTTCCTTCGCCTCCGCGAACGCGCTGTACACGTCGGCCGCGATCATGCGCGACCAGAGGTGGCCGTAGTAGGCGGCACCCCAGTCGCCGGACGCGATCGCGACCAGCGAGCACGGATGGGCGTCCTTCCGGTCGAGCGGGAACGGGTGGTAGTGCGGGTACAGCTTGCGCATCACGTCCAGCCAGTAGTCGCTGGTCAGGTGCAGCTGCAGGTCGAGATTGGCCAGGTAGAGCTCGCGG]
consensusID : consensus_7289#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 879 fasta sequence
[GCCAAGAATTCGGCACGATGGCGCGTTCGCCGCCAGCATGGTGAGCGGGTTCTTTACCTGCGTCTTCATGTCACCGTTCGACGTGATCGCGACGCGGCTCTTCAACCAGGGTGTCGATGCGAACGGGCGCGGATTGCTCTACCGGAGCGTGGCCGACTGCTTCACCAAAACGCTCCGGACCGAGGGCCTGCACGGGCTGTACAAGGGATTCGTGCCGAACTACTGGCGCATCGCGCCCCACACCATCCTCAATCTGACGTTCTGGGATCAGTTCAAGGCGTGGCGTGATCTCTACTACGGATACTAGAGCAAGCAATACAACTAATGTTTAGAGCTAGAGCGTTTTTATTGCTTATCAGCCGGCGGAGAGTCGAGCGGTCGCGTGGTTCATTGGTACAGCGCTCGGGTTAGCACCCGACAGGTCGTGCGATCAAATCTAATCGGCGGAGAGAGGGTGGATTTGCAGCGTGTTAAGGACGAATAATTGCTGCTGCACCGCGGAAGCAGCCAAAACGAAACTAACACAGCAAAAAACCGAGTTTTGCCTAACGTAGTCTAAGTCTTCAAACACAAATTTGTGCGATTTTGCTGTCGTATCCTCTTACTTCTCTTTTACACTTNATGATTACCACTAGAACTCATTTACGGCGTAACGCATCATATGCTAACCAGGTACTACTTAAAACTTAGAGGCTTCCTTGAACAAACAAAAGACCACAAATTAGGGGCACACGAAACTTCACNCACACAGGACACAACAANAAAACCCGGTTAAANCAAAAAAAAAACACACACAGANCACAATCTCAAAAACAACNNAGCACTATTCTCGCGAGACACCGAAAGACNTTATTTACCCCNTTATAAAGTCNNAACAGG]
[+] EMBL BX467985 [GCCAAGAATTCGGCACGATGGCGCGTTCGCCGCCAGCATGGTGAGCGGGTTCTTTACCTGCGTCTTCATGTCACCGTTCGACGTGATCGCGACGCGGCTCTTCAACCAGGGTGTCGATGCGAACGGGCGCGGATTGCTCTACCGGAGCGTGGCCGACTGCTTCACCAAAACGCTCCGGACCGAGGGCCTGCACGGGCTGTACAAGGGATTCGTGCCGAACTACTGGCGCATCGCGCCCCACACCATCCTCAATCTGACGTTCTGGGATCAGTTCAAGGCGTGGCGTGATCTCTACTACGGATACTAGAGCAAGCAATACAACTAATGTTTAGAGCTAGAGCGTTTTTATTGCTTATCAGCCGGCGGAGAGTCGAGCGGTCGCGTGGTTCATTGGTACAGCGCTCGGGTTAGCACCCGACAGGTCGTGCGATCAAATCTAATCGGCGGAGAGAGGGTGGATTTGCAGCGTGTTAAGGACGAATAATTGCTGCTGCACCGCGGAAGCAGCCAAAACGAAACTAACACAGCAAAAAACCGAGTTTTGCCTAACGTAGTCTAAGTCTTCAAACACAAATTTGTGCGATTTTGCTGTCGTATCCTCTTACTTCTCTTTTACACTTNATGATTACCACTAGAACTCATTTACGGCGTAACGCATCATATGCTAACCAGGTACTACTTAAAACTTAGAGGCTTCCTTGAACAAACAAAAGACCACAAATTAGGGGCACACGAAACTTCACNCACACAGGACACAACAANAAAACCCGGTTAAANCAAAAAAAAAACACACACAGANCACAATCTCAAAAACAACNNAGCACTATTCTCGCGAGACACCGAAAGACNTTATTTACCCCNTTATAAAGTCNNAACAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7289#0 CGGGGGCTGTGGCGGGGCTACCCGGGCATCGTGACGCGCACCGCCGTCGGTTCGTCCGCC 60
consensus_7289#1 ------------------------------------------------------------
consensus_7289#0 CAGCTCGCCACGTTCTCCACCTGCAAGGACCTGTTCGGGCAGTTCGAGTGGGCGCCGACT 120
consensus_7289#1 --------------------------------------------------GCCAAGAATT 10
* * * *
consensus_7289#0 CGGTCGCGGTGAACGCGTTCGCCGCCAGCATGGTGAGCGGGTTCTTTACCTGCGTCTTCA 180
consensus_7289#1 CGG-CACGATGG-CGCGTTCGCCGCCAGCATGGTGAGCGGGTTCTTTACCTGCGTCTTCA 68
*** * ** ** ***********************************************
consensus_7289#0 TGTCACCGTTCGACGTGATCGCGACGCGGCTCTTCAACCAGGGTGTCGATGCGAACGGGC 240
consensus_7289#1 TGTCACCGTTCGACGTGATCGCGACGCGGCTCTTCAACCAGGGTGTCGATGCGAACGGGC 128
************************************************************
consensus_7289#0 GCGGATTGCTCTACCGGAGCGTGGCCGACTGCTTCACCAAAACGCTCCGGACCGAGGGCC 300
consensus_7289#1 GCGGATTGCTCTACCGGAGCGTGGCCGACTGCTTCACCAAAACGCTCCGGACCGAGGGCC 188
************************************************************
consensus_7289#0 TGCACGGGCTGTACAAGGGGTTCGTGCCGAACTACTGG-GCATGCGCGCCCCACACCATC 359
consensus_7289#1 TGCACGGGCTGTACAAGGGATTCGTGCCGAACTACTGGCGCAT-CGCGCCCCACACCATC 247
******************* ****************** **** ****************
consensus_7289#0 CTCAATCTGACGTTCTGGGATCAGTTCAAGGCGTGGCGTGATCTCTACTACGGATACTAG 419
consensus_7289#1 CTCAATCTGACGTTCTGGGATCAGTTCAAGGCGTGGCGTGATCTCTACTACGGATACTAG 307
************************************************************
consensus_7289#0 AGCAAGCAATACAACTAATGTTTAGAGCTAGAGAATTTTTGTTGCTTATCAGCCGGCGGA 479
consensus_7289#1 AGCAAGCAATACAACTAATGTTTAGAGCTAGAGCGTTTTTATTGCTTATCAGCCGGCGGA 367
********************************* ***** *******************
consensus_7289#0 GAGTCGAGCGGTCGCGTGGTTCATTGGTACGGCGGCTCGGTTAGCACCCGACAGGTCGTG 539
consensus_7289#1 GAGTCGAGCGGTCGCGTGGTTCATTGGTACAGCGCTCGGGTTAGCACCCGACAGGTCGTG 427
****************************** *** **********************
consensus_7289#0 CGATCAAATCTAATCGGCGGAGAGAGAGTGGATTTCCAGCGTGTTAAGGA-GAATGAATG 598
consensus_7289#1 CGATCAAATCTAATCGGCGGAGAGAGGGTGGATTTGCAGCGTGTTAAGGACGAATAATTG 487
************************** ******** ************** **** * **
consensus_7289#0 CTGCTGCACCGCAGAAGCAGCCAAAACGAAACTAACACAACAAAAAAACCGAGTTTTGCC 658
consensus_7289#1 CTGCTGCACCGCGGAAGCAGCCAAAACGAAACTAACACAGCAAAAAA-CCGAGTTTTGCC 546
************ ************************** ******* ************
consensus_7289#0 TAACGTAGTCTAAGTCTTCAA-CACAA-TTTGTGCGATTTTGCTGTGTTTTTTTTTTTCT 716
consensus_7289#1 TAACGTAGTCTAAGTCTTCAAACACAAATTTGTGCGATTTTGCTGTCGTATCCTCTTACT 606
********************* ***** ****************** * * * ** **
consensus_7289#0 TCTCTTTTTTA--TTATGATTACCACTAGAA-TCATT-ACG-CGTAACGCATCATATGCT 771
consensus_7289#1 TCTCTTTTACACTTNATGATTACCACTAGAACTCATTTACGGCGTAACGCATCATATGCT 666
******** * * **************** ***** *** ******************
consensus_7289#0 ACC--AGTACTACTTAAAACT-AGAGGCTTC--TGAACAAACAAAAAAATAGGCAAAAAT 826
consensus_7289#1 AACCAGGTACTACTTAAAACTTAGAGGCTTCCTTGAACAAACAAAAGAC----CACAAAT 722
* * *************** ********* ************* * ** ****
consensus_7289#0 AAAAAGAAAAAAAACCGCTGAGCATGTGCTATGTTCGTTCGCAGCTGCAAGTCGGGGGTG 886
consensus_7289#1 TAGGGGCACACGAA--ACTTCACNCACACAGGACACAACAANAAAACCCGGTTAAANCAA 780
* * * * ** ** * * * * * **
consensus_7289#0 TGTCGAACGACACAAGTCTGAGCCCTTTCTTTAAACTTTCAATTTGTTTCGTATGTGTGT 946
consensus_7289#1 AAAAAAAACACACA---CAGANCACAATCTCAAAAACAACNNAGCACTATTCTCGCGAGA 837
** ***** * ** * * *** *** * * * * *
consensus_7289#0 CTGTGTGCGATTATTTGTACACCAACATTAA-CAACAACAAAAAGGGATGCAAATTTTCT 1005
consensus_7289#1 CACCGAAAGACNTTATTTACCCCNTTATAAAGTCNNAACAGG------------------ 879
* * ** * * *** ** ** ** ****
consensus_7289#0 GCAGTTTGCCCTTTTCGCCACCTACTGCTGCTGCTGCTGCTGCTGCTGTTCCTCCTTCCC 1065
consensus_7289#1 ------------------------------------------------------------
consensus_7289#0 GGCCGCTTTCGGGTGTGCCGCGACGGATCCACCACCACCGCCCACCGTTTGCGGCTTGTA 1125
consensus_7289#1 ------------------------------------------------------------
consensus_7289#0 AATGCCGAGCGTCTGGAGCAGGGCGGTCGGGGACGGATCCCGCCCGCGGAAGCGCCGGAA 1185
consensus_7289#1 ------------------------------------------------------------
consensus_7289#0 CACCTCGCCCGGATGGCAGCCGCCGCCGAGCGCCAGGAACGTGTCGCGGAACCGGCGGCC 1245
consensus_7289#1 ------------------------------------------------------------
consensus_7289#0 CACCTCCTGCCGGGCGGCCGGTTCCTTCGCCTCCGCGAACGCGCTGTACACGTCGGCCGC 1305
consensus_7289#1 ------------------------------------------------------------
consensus_7289#0 GATCATGCGCGACCAGAGGTGGCCGTAGTAGGCGGCACCCCAGTCGCCGGACGCGATCGC 1365
consensus_7289#1 ------------------------------------------------------------
consensus_7289#0 GACCAGCGAGCACGGATGGGCGTCCTTCCGGTCGAGCGGGAACGGGTGGTAGTGCGGGTA 1425
consensus_7289#1 ------------------------------------------------------------
consensus_7289#0 CAGCTTGCGCATCACGTCCAGCCAGTAGTCGCTGGTCAGGTGCAGCTGCAGGTCGAGATT 1485
consensus_7289#1 ------------------------------------------------------------
consensus_7289#0 GGCCAGGTAGAGCTCGCGG 1504
consensus_7289#1 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||