These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7291#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1112 fasta sequence [TTTGATAAATACTTTATTCGTGTACGAAACCATTGCCACTACACCGCGCGTTTAACTGGGGCTGCCATCCGCTTGCGCACTACTCGCACAACGCATCTAGGTCGGGAACGCACATGCCCATCAGCGGATCGAACCGCTCGCCGGCAGCGCACTTGAACTTGCTCTTCTTGAACTTGTCCAGCTTCTTGAGCGTGCAGACGAAGTAGCGACCGCAGTTGTTCGGATCGGCAAAGGTGCCCTCCTCCAGACACTGGAACTTTACCTTCAGCTTCGGTTGCTCCTCAGCTACCGGGGTGACGGGCTCAACCTCCGTTTCCACCGGCTCCACCGCACTATCGACTTCCGCTGGGTGCGACTCCTCGGCAACTTCAGCCGCCGCCAGCTCGTCGTCCAGCTCATCAAACGGCAGCGAACGTCCCGCCACCGCAAAGGCACACCGTCCGCGGAACGCATTGTACACCTGGCCCATCGGGCACTGCATCTTGTACTGCAGGTAGCCACCGAACATGTTCCACACGCACCAGAAGTAAAAAGTCGGATCGGCCGGATCGGGGAACCGACCCGGGCCCATGCACGTGAACTCCCCGGGGAAGCAAACGCTCTGGTCGGCCGTACAAAAAAAGCTTCAGGAGTCTCTGGTGCCTCGGTGCCGGTGGGTTCAGTAGCCTCTGGTTCCTCCGATGGTACGACGGGGGATTCAGGAGTCTCCGATTCCTCAGCCGGTTGAGAAGTGGGCTCAGACGCTTCGAGCTCTACCGATGGTTCGGAGCTAGCTTCCGGAGCCTCAGTCTCCACAGGCGATGCTGGTGTCGTTTCCGAAGCTTCAGGTTCCACGGATGCTTCCGAGGTAACTTCCTCAACTTCGGCTTCCACCTCAGGCTCTGATGGTACCGTTTCGGAACCCGTTTCCTCTTCTACCTCTGGGAGAACTGGTGCTTCGGTTTCTTCCGGAACTTCCGGTCTCTCTGTTTCTACCTGCTCTGGTGTTTCTGGAACTGCGGCTGTAGAAGCGTCCTCCGAGACTTCGGTCTCAGCAGCTACGCCCTCCGTCGATTGTTCGGACTGTACACTTTCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGG] [+] EMBL CNS08FBJ [TTTGATAAATACTTTATTCGTGTACGAAACCATTGCCACTACACCGCGCGTTTAACTGGGGCTGCCATCCGCTTGCGCACTACTCGCACAACGCATCTAGGTCGGGAACGCACATGCCCATCAGCGGATCGAACCGCTCGCCGGCAGCGCACTTGAACTTGCTCTTCTTGAACTTGTCCAGCTTCTTGAGCGTGCAGACGAAGTAGCGACCGCAGTTGTTCGGATCGGCAAAGGTGCCCTCCTCCAGACACTGGAACTTTACCTTCAGCTTCGGTTGCTCCTCAGCTACCGGGGTGACGGGCTCAACCTCCGTTTCCACCGGCTCCACCGCACTATCGACTTCCGCTGGGTGCGACTCCTCGGCAACTTCAGCCGCCGCCAGCTCGTCGTCCAGCTCATCAAACGGCAGCGAACGTCCCGCCACCGCAAAGGCACACCGTCCGCGGAACGCATTGTACACCTGGCCCATCGGGCACTGCATCTTGTACTGCAGGTAGCCACCGAACATGTTCCACACGCACCAGAAGTAAAAAGTCGGATCGGCCGGATCGGGGAACCGACCCGGGCCCATGCACGTGAACTCCCCGGGGAAGCAAACGCTCTGGTCGGCCGTACAAAAAAAGCTTCAGGAGTCTCTGGTGCCTCGGTGCCGGTGGGTTCAGTAGCCTCTGGTTCCTCCGATGGTACGACGGGGGATTCAGGAGTCTCCGATTCCTCAGCCGGTTGAGAAGTGGGCTCAGACGCTTCGAGCTCTACCGATGGTTCGGAGCTAGCTTCCGGAGCCTCAGTCTCCACAGGCG ] [-] EMBL BM580460 [ gGCTTCAGGAGTCTCTGGTGCCTCGGTGCCGGTGGGTTCAGTAGCCTCTGGTTCCTCCGATGGTACGACGGGGGATTCAGGAGTCTCCGTTTCCTCAGCCGGTTGAGAAGTGGGCTCAGACGCTTCGGGCTCTACCGACGGTTCGGAGCTAGCTTCCGGAGCCTCAGTCTCCACAGGCGATGCTGGTGTCGTTTCCGAAGCTTCAGGTTCCACGGATGCTTCCGAGGTAACTTCCTCAACTTCGGCTTCCACCTCAGGCTCTGATGGTACCGTTTCGGAACCCGTTTCCTCTTCTACCTCTGGGAGAACTGGTGCTTCGGTTTCTTCCGGAACTTCCGGTCTCTCTGTTTCTACCTGCTCTGGTGTTTCTGGAACTGCGGCTGTAGAAGCGTCCTCCGAGACTTCGGTCTCAGCAGCTACGCCCTCCGTCGATTGTTCGGACTGTACACTTTCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGG] consensusID : consensus_7291#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 517 fasta sequence [CCGCGGACGCGTGGGCGAGCGTCTCACCAACTCGCTGATGATGAAGGGCCGCAACAACGGCAAGAAGCTGAAGGCGGTGCGCATCGTGCGCCACGCGTTCGAAATCATGCATCTGCTGACCGGCGAGAACCCGCTGCAGATTGTGGTGCACGCCATCATCAACTCGGGTCCGCGTGAAGACTCCACCCGTATCGGCCGTGCCGGTACCGTCCGTCGTCAGGCCGTCGATGTGTCTCCTCTGCGTCGTGTGAATCAGGCTATCTGGCTGCTGTGCACCGGTGCTCGTGAGGCTGCATTCCGTAACATCAAGACGGTTGCCGAATGTTTGGCCGATGAGCTGATCAACGCCGCGAAGGGTTCGTCGAACTCGTACGCCATCAAGAAAGAAGGATGAGCTGGAGCGTGTGGCCAAGTCTAACCGATAAGCTGCCCCATGTCACGTCTCGTCACTTTTTGTTAGGAGGAGAGGGAAAACCGTTGCTTGGCGGTGGTGGTCCCTCTCCTCCTAACAAAAAAT] [+] EMBL BM612507 [CCGCGGACGCGTGGGCGAGCGTCTCACCAACTCGCTGATGATGAAGGGCCGCAACAACGGCAAGAAGCTGAAGGCGGTGCGCATCGTGCGCCACGCGTTCGAAATCATGCATCTGCTGACCGGCGAGAACCCGCTGCAGATTGTGGTGCACGCCATCATCAACTCGGGTCCGCGTGAAGACTCCACCCGTATCGGCCGTGCCGGTACCGTCCGTCGTCAGGCCGTCGATGTGTCTCCTCTGCGTCGTGTGAATCAGGCTATCTGGCTGCTGTGCACCGGTGCTCGTGAGGCTGCATTCCGTAACATCAAGACGGTTGCCGAATGTTTGGCCGATGAGCTGATCAACGCCGCGAAGGGTTCGTCGAACTCGTACGCCATCAAGAAAGAAGGATGAGCTGGAGCGTGTGGCCAAGTCTAACCGATAAGCTGCCCCATGTCACGTCTCGTCACTTTTTGTTAGGAGGAGAGGGAAAACCGTTGCTTGG ] [-] EMBL AGA281564 [ TGTCTCCTCTGCGTCGTGTGAATCAGGCTATCTGGCTGCTGTGCACCGGTGCTCGTGAGGCTGCATTCCGTAACATCAAGACGGTTGCCGAATGTTTGGCCGATGAGCTGATCAACGCCGCGAAGGGTTCGTCGAACTCGTACGCCATCAAG AAGAAGGATGAGCTGGAGCGTGTGGCCAAGTCTAACCGATAAGCTGCCCCATGTCACGTCTCGTCACTTTTTGTTAGGAGGAGAGGGAAAACCGTTGCTTGTCGGTGGTGGTCCCTCTCCTCCTAACAAAAAAT] consensusID : consensus_7291#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 387 fasta sequence [AGACACATCACACCACCCGGGATCATAATTTGGCATGGTGGCCAAAGGGAAGAAAAAGTTCATCAAGCTTCTCGAACGGGAGGATATGCATTCATGCATCTACATCCAGCTGTGTGCGTTCCGATCTGCCATAACTATTGGTTATACAGCTTTTTCCGTCTCTAAAAAGAGGACAAATCAATAGAACATCGCTGGTGTGTCCATCTACAGGTTAATGAGGACTAGAGGAGCAAAATACCCGCTTCTTGCAGGATACTTACCCATGAGTGTGTTTGTTCTAATTGGCTACAGCAACAAAACGATACGCCCTACAGCAAATTCACGATAGCAAAACCAATTTAGTGTTATCCAATAAAACAAATAATTTTATTGGAAGCAAAAAAAAAA] [+] EMBL CF541628 [AGACACATCACACCACCCGGGATCATAATTTGGCATGGTGGCCAAAGGGAAGAAAAAGTTCATCAAGCTTCTCGAACGGGAGGATATGCATTCATGCATCTACATCCAGCTGTGTGCGTTCCGATCTGCCATAACTATTGGTTATACAGCTTTTTCCGTCTCTAAAAAGAGGACAAATCAATAGAACATCGCTGGTGTGTCCATCTACAGGTTAATGAGGACTAGAGGAGCAAAATACCCGCTTCTTGCAGGATACTTACCCATGAGTGTGTTTGTTCTAATTGGCTACAGCAACAAAACGATACGCCCTACAGCAAATTCACGATAGCAAAACCAATTTAGTGTTATCCAATAAAACAAATAATTTTATTGGAAGCAAAAAAAAAA] [+] EMBL BM578283 [ ccgGGATAAGAGGAGCAGAATACCCGCTTCTTGCAAGACACTTACCCTTGAGTGTGTTTGTTCTAATTGGCTACTGCAACAAAACGATACGCCCTACAGCAAATTCACGATAGCAAAACCAATTTAGTGTTATCCAATAAAACAAATAATTTTATTG ] consensusID : consensus_7291#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 86 fasta sequence [CTTCAGTGGGAGGCACTTCCGTTTCGGTTGGAATCTCGGGCGCTGGTTCCGAGGCCGGTTCGGTAAAACCAGTAGGCCAAAAGTTC] [+] EMBL CNS08G4X [CTTCAGTGGGAGGCACTTCCGTTTCGGTTGGAATCTCGGGCGCTGGTTCCGAGGCCGGTTCGGTAAAACCAGTAGGCCAAAAGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7291#0 TTTGATAAATACTTTATTCGTGTACGAAACCATTGCCACTACACCGCGCGTTTAACTGGG 60 consensus_7291#3 ------------------------------------------------------------ consensus_7291#1 ------------------------------------------------------------ consensus_7291#2 ------------------------------------------------------------ consensus_7291#0 GCTGCCATCCGCTTGCGCACTACTCGCACAACGCATCTAGGTCGGGAACGCACATGCCCA 120 consensus_7291#3 ------------------------------------------------------------ consensus_7291#1 ------------------------------------------------------------ consensus_7291#2 ------------------------------------------------------------ consensus_7291#0 TCAGCGGATCGAACCGCTCGCCGGCAGCGCACTTGAACTTGCTCTTCTTGAACTTGTCCA 180 consensus_7291#3 ------------------------------------------------------------ consensus_7291#1 ------------------------------------------------------------ consensus_7291#2 ------------------------------------------------------------ consensus_7291#0 GCTTCTTGAGCGTGCAGACGAAGTAGCGACCGCAGTTGTTCGGATCGGCAAAGGTGCCCT 240 consensus_7291#3 ------------------------------------------------------------ consensus_7291#1 ------------------------------------------------------------ consensus_7291#2 ------------------------------------------------------------ consensus_7291#0 CCTCCAGACACTGGAACTTTACCTTCAGCTTCGGTTGCTCCTCAGCTACCGGGGTGACGG 300 consensus_7291#3 ------------------------------------------------------------ consensus_7291#1 ------------------------------------------------------------ consensus_7291#2 ------------------------------------------------------------ consensus_7291#0 GCTCAACCTCCGTTTCCACCGGCTCCACCGCACTATCGACTTCCGCTGGGTGCGACTCCT 360 consensus_7291#3 ------------------------------------------------------------ consensus_7291#1 ------------------------------------------------------------ consensus_7291#2 ------------------------------------------------------------ consensus_7291#0 CGGCAACTTCAGCCGCCGCCAGCTCGTCGTCCAGCTCATCAAACGGCAGCGAACGTCCCG 420 consensus_7291#3 ------------------------------------------------------------ consensus_7291#1 ------------------------------------------------------------ consensus_7291#2 ------------------------------------------------------------ consensus_7291#0 CCACCGCAAAGGCACACCGTCCGCGGAACGCATTGTACACCTGGCCCATCGGGCACTGCA 480 consensus_7291#3 ------------------------------------------------------------ consensus_7291#1 ------------------------------------------------------------ consensus_7291#2 ------------------------------------------------------------ consensus_7291#0 TCTTGTACTGCAGGTAGCCACCGAACATGTTCCACACGCACCAGAAGTAAAAAGTCGGAT 540 consensus_7291#3 ------------------------------------------------------------ consensus_7291#1 ------CCGCGGACGCGTGGGCGAGCGTCTCACCAACTCGCTGATGATGAAGGGCCGCAA 54 consensus_7291#2 ------------------------------------------------------------ consensus_7291#0 CGGCCGGATCGGGGAACCGACCCGGGCCCATGCACGTGAACTCCCCGGGGAAGCAAACGC 600 consensus_7291#3 ------------------------------------------------------------ consensus_7291#1 CAACGGCAAGAAGCTGAAGGCGGTGCGCATCGTGCGCCACGCGTTCGAAATCATGCATCT 114 consensus_7291#2 ------------------------AGACACATCACACCACCCGGGATCATAATTTGGCAT 36 consensus_7291#0 TCTGGTCGGCCGTA---CAAAAAAAGCTTCAGGA---GTCTCTGGTGCCTCGGTGCCGGT 654 consensus_7291#3 --------------------------CTTCAGTG---GGA---GGCACTTCCGTTTCGGT 28 consensus_7291#1 GCTGACCGGCGAGAACCCGCTGCAGATTGTGGTGCACGCCATCATCAACTCGGGTCCGCG 174 consensus_7291#2 GGTGGCCAAAGGGAAGAAAAAGTTCATCAAGCTTCTCGAACGGGAGGATATGCATTCA-- 94 * * consensus_7291#0 GGGTTCAGTAGCCTCTGGTTCCTCCGATGGTACGACGGGGGATTCAGGAGTCTCCGATTC 714 consensus_7291#3 TGGAATCTCGGGCGCTGGTTCCGAGGCCGGTTCGGTAA---AACCAGTAGGCCAAAAGTT 85 consensus_7291#1 TGAAGACTCCACCCGTATCGGCCGTGCCGGTACCGTCCGTCGTCAGGCCGTCGATGTGTC 234 consensus_7291#2 TGCATCTACATCCAGCTGTGTGCGTTCCGATCTGCCAT---AACTATTGGTTATACAGCT 151 * * * * * consensus_7291#0 CTCAGCCGGTTGAGAAGTGGGCTCAGACGCTTCGAGCTCTACCGATGGTTCGGAGCTAGC 774 consensus_7291#3 C----------------------------------------------------------- 86 consensus_7291#1 TCCTCTGCGTCGTGTGAATCAGGCTATCTGGCTGCTGTGCACCGGTGCTCGTGAGGCTGC 294 consensus_7291#2 TTTTC--CGTCTCTAAAAAGAGGACAAATCAATAGAACATCGCTGGTGTGTCCATCTACA 209 consensus_7291#0 TTCCGGAGCCTCAGTCTCCACAGGCGATGCTGGTGTCGTTTCCGAAGCTTCAGGTTCCAC 834 consensus_7291#3 ------------------------------------------------------------ consensus_7291#1 ATTCCGTAACATCAAGACGGTTGCCGAATGTTTGGCCGATGAGCTGATCAACGCCGCGAA 354 consensus_7291#2 GGTTAATGAGGACTAGAGGAGCAAAATACCCGCTTCTTGCAGGATACTTACCCATGAGTG 269 consensus_7291#0 GGATGCTTCCGAGGTAACTTCCTCAACTTCGGCTTCCACCTCAGGCTCTGATGGTACCGT 894 consensus_7291#3 ------------------------------------------------------------ consensus_7291#1 GGGTTCGTCGAACTCGTACGCCATCAAGAAAGAAGGATGAGCTGGAGCGTGTGGCCAAGT 414 consensus_7291#2 TGTTTGTTCTAATTGG--CTACAGCAACAAAACGATACGCCCTACAGCAAATTCACGATA 327 consensus_7291#0 TTCGGAACCCGTTTCCTCTTCTACCTCTGGGAGAACTGGTGCTTCGGTTTCTTCCGGAAC 954 consensus_7291#3 ------------------------------------------------------------ consensus_7291#1 CTAACCGATAAGCTGCCCCATGTCACGTCTCGTCACTTTTTGTTAGGAGGAGAGGGAAAA 474 consensus_7291#2 GCAAAACCAATTTAGTGTTATCCAATAAAACAAATAATTTTATTGGAAGCAAAAAAAAAA 387 consensus_7291#0 TTCCGGTCTCTCTGTTTCTACCTGCTCTGGTGTTTCTGGAACTGCGGCTGTAGAAGCGTC 1014 consensus_7291#3 ------------------------------------------------------------ consensus_7291#1 CCGTTGCTTGGCGGTGGTGGTCCCTCTCCTCCTAACAAAAAAT----------------- 517 consensus_7291#2 ------------------------------------------------------------ consensus_7291#0 CTCCGAGACTTCGGTCTCAGCAGCTACGCCCTCCGTCGATTGTTCGGACTGTACACTTTC 1074 consensus_7291#3 ------------------------------------------------------------ consensus_7291#1 ------------------------------------------------------------ consensus_7291#2 ------------------------------------------------------------ consensus_7291#0 GGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGG 1112 consensus_7291#3 -------------------------------------- consensus_7291#1 -------------------------------------- consensus_7291#2 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||