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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7301#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1323 fasta sequence
[ATATGCATATCGTTTGCCTGCTGGCGGAGCGAAAATGGAAAATGGGAAACTGGACGAAAAGATTACGTATTTTCATATAAGTATGCCTTTTTAAGACCTAGTAATTATTGTTGTCGAACAGTTTACGGTTCGACTGCCGGTGAGCGCGCCACTACAGGCCATGAGCAGGAGACAAGTTAATGCTTCTTCTTTTTTCTCCTTCGGTCATTTAAAACAGAAAAATTCATGCACTCAAAAACTCGGAAAGAGCACTGATCGAAATGCATGTTTGAATAAAAACTGAAACAAAAAGACGCGCATACACACGAAGTAACAGCAAAATAGCAATGTGTTCGCCTGTAAGGGCCACCACTTGAAGGTTGAATGCTCGGGTTCCAATTTTGATCATCAACGATGGTAGTAGGCCTAGTGTTAGCTTTATTTCGCTGCTCCGCTCCGGTCAGTTGAGGCTTCACATATCGGCGACACTATTGGCAAGTGACTATTGATTCGTTCCCCCATTTTTGGGCCTTGTTTTGATTGTCGCGGG-TTGGTCAAGCTTATCCTTGATTCTTTTTACACGTCCACATCTTTACACACATACACACATCTATATGTATACACATACGTAGCATTGCTATAAAAATGCCATCGGAGAGACACATTCGTCCTGTGTGTGGGAATGATTAAAAAAAAATCAAAAAAACTAACTAGAGCTAGGCCGAAGCAGCAGATAAATATGCAGGCTTGTGAGAAGTGCCTCTTCTTGGAAGCGACAGGAAGAGGGGTTCAGGAGCGTGTGGGATGCTGTTACTGCTGCTGAAACGC-AAATGACAATGTAATAAAACAGAGAAAAGGACGGAAAAAGCAACAACGATCGGCCCTACTCAGTAGGTAGAACGTGGCAGTGGAGCGTAATACAGAAGAAAAACGAAAACAGTGAGATGGGCAGTGTTTTCTTTTAAACCCTTTGTATAGCGATAATGTAGTAGAGCATATTGGACAGCCAAACACACTCACTAGCTACGCCCTAGCACGACAGAGAGGAGCAATGTTCAGTTTTGAAATGATAACGACGATGATCAGGACACATTCAAGCAGATAACACGTGCACAGAAGTAAAGGGATACGACAGACAGGAGAGACAGTGTAACAGCAACAGGTTTGATCGTTAAGCGGCACACAGGAGGTGCGATTTTATAACGTTTCATTATGCGACTATGAATGAATGCTATCGATAAATATTTAACTAAGCGAGACAAAACAAAACAACAACCGGTTTAGTGCAGAGAATAAAAATCAATAACCAATTCAAAAAAAAAAAAAAAACCCACGCGTCCGCGG]
[+] EMBL BX625158 [ATATGCATATCGTTTGCCTGCTGGCGGAGCGAAAATGGAAAATGGGAAACTGGACGAAAAGATTACGTATTTTCATATAAGTATGCCTTTTTAAGACCTAGTAATTATTGTTGTCGAACAGTTTACGGTTCGACTGCCGGTGAGCGCGCCACTACAGGCCATGAGCAGGAGACAAGTTAATGCTTCTTCTTTTTTCTCCTTCGGTCATTTAAAACAGAAAAATTCATGCACTCAAAAACTCGGAAAGAGCACTGATCGAAATGCATGTTTGAATAAAAACTGAAACAAAAAGACGCGCATACACACGAAGTAACAGCAAAATAGCAATGTGTTCGCCTGTAAGGGCCACCACTTGAAGGTTGAATGCTCGGGTTCCAATTTTGATCATCAACGATGGTAGTAGGCCTAGTGTTAGCTTTATTTCGCTGCTCCGCTCCGGTCAGTTGAGGCTTCACATATCGGCGACACTATTGGCAAGTGACTATTGATTCGTTCCCCCATTTTTGGGCCTTGTTTTGATTGTCGCGGG TTGGTCAAGCTTATCCTTGATTCTTTTTACACGTCCACATCTTTACACACATACACACATCTATATGTATACACATACGTAGCATTGCTATAAAAATGCCATCGGAGAGACACATTCGTCCTGTGTGTGGGAATGATTAAAAAAAAATCAAAAAAACTAACTAGAGCTAGGCCGAAGCAGCAGATAAATATGCAGGCTTGTGAGAAGTGCCTCTTCTTGGAA ]
[-] EMBL BX622743 [ TTTATTTCGCTGCTCCGCTCCGGTCAGTNGAGGCTTCACATATCGGCGACACTATTGGCAAGTGACTATTGATTCGTTCCCCCATTTTTGGGCCTTGTTTTGATTGTCGCGGG TTGGTCAAGCTTATCCTTGATTCTTTTTACACGTCCACATCTTTACACACATACACACATCTATATGTATACACATACGTAGCATTGCTATAAAAATGCCATCGGAGAGACACATTCGTCCTGTGTGTGGGAATGATTAAAAAAAAATCAAAAAAACTAACTAGAGCTAGGCCGAAGCAGCAGATAAATATGCAGGCTTGTGAGAAGTGCCTCTTCTTGGAAGCGACAGGAAGAGGGGTTCAGGAGCGTGTGGGATGCTGTTACTGCTGCTGAAACGC AAATGACAATGTAATAAAACAGAGAAAAGGACGGAAAAAGCAACAACGATCGGCCCTACTCAGTAGGTAGAACGTGGCAGTGGAGCGTAATACAGAAGAAAAACGAAAACAGTGAGATGGGCAGTGTTTTCTTTTAAACCCTTTGTATAGCGATAATGTAGTAGAGCATATTGGACAGCCAAACACACTCACTAGCTACGCCCTAGCACGACAGAGAGGAGCAATGTTCAGTTTTGAAATGATAACGACGATGATCAGGACACATTCAAGCAGATAACACGTGCACAGAAGTAAAGGGATACGACAGACAGGAGAGACAGTGTAACAGCAACAGGTTTGATCGTTAA ]
[+] EMBL BX612895 [ TCGCTGCTCCGCTCCGGTCAGTTGAGGCTTCACATATCGGCGACACTATTGGCAAGTGACTATTGATTCGTTCCCCCATTTTTGGGCCTTGTTTTGATTGTCGCGGG TTGGTCAAGCTTATCCTTGATTCTTTTTACACGTCCACATCTTTACACACATACACACATCTATATGTATACACATACGTA ]
[-] EMBL BX627850 [ TGTCGCGGGTTTGGTCAAGCTTATCCTTGATTCTTTTTACACGTCCACATCTTTACACACATACACACATCTATATGTATACACATACGTAGCATTGCTATAAAAATGCCATCGGAGAGACACATTCGTCCTGTGTGTGGGAATGATTAAAAAAAAATCAAAAAAACTAACTAGAGCTAGGCCGAAGCAGCAGATAAATATGCAGGCTTGTGAGAAGTGCCTCTTCTTGGAAGCGACAGGAAGAGGGGTTCAGGAGCGTGTGGGATGCTGTTACTGCTGCTGAAACGC AAATGACAATGTAATAAAACAGAGAAAAGGACGGAAAAAGCAACAACGATCGGCCCTACTCAGTAGGTAGAACGTGGCAGTGGAGCGTAATACAGAAGAAAAACGAAAACAGTGAGATGGGCAGTGTTTTCTTTTAAACCCTTTGTATAGCGATAATGTAGTAGAGCATATTGGACAGCCAAACACACTCACTAGCTACGCCCTAGCACGACAGAGAGGAGCAATGTTCAGTTTTGAAATGATAACGACGATGATCAGGACACATTCAAGCAGATAACACGTGCACAGAAGTAAAGGGATACGACAGACAGGAGAGACAGTGTAACAGCAACAGGTTTGATCGTTAAGCGGCACACAGGAGGTGCGATTTTATAACGTTTCATTATG ]
[-] EMBL BM636877 [ CTGCTGCTGAAACGCAAAATGCCAATGTAATAAACCAGAGAAAAGGCCGGAAAAAGCAACAACGATCGGCCCTACTCAGTAGGTAGAACGTGGCAGTGGAGCGTAATACAGAAGAAAAACGAAAACAGTGAGATGGGCAGTGTTTTCTTTTAAACCCTTTGTATAGCGATAATGTAGTAGAGCATATTGGACAGCCAAACACACTCACTAGCTACGCCCTAGCACGACAGAGAGGAGCAATGTTCAGTTTTGAAATGATAACGACGATGATCAGGACACATTCAAGCAGATAACACGTGCACAGAAGTAAAGGGATACGACAGACAGGAGAGACAGTGTAACAGCAACAGGTTTGATCGTTAAGCGGCACACAGGAGGTGCGATTTTATAACGTTTCATTATGCGACTATGAATGAATGCTATCGATAAATATTTAACTAAGCGAGACAAAACAAAACAACAACCGGTTTAGTGCAGAGAATAAAAATCAATAACCAATTCAAAAAAAAAAAAAAAACCCACGCGTCCGCGG]
consensusID : consensus_7301#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence
[AGAATCCCCGACGGTTATACACACGAAGTAACAGAACATANCATGTGTTCGCCTGTAAGGGCCACCACTTGAAGGTTAGATGCTCGGGATCCAATTTTGATCATCAACGATGGTAGTAGGCCTAGAGTTAGCTTTATTTCGCTGCTCCGCACCGGTCAGTTGAGGCTTCACATATCAGGCGACACTATTGGCAAGTGACTATAAGGTCTCTGTTCCCCCCTATAAATAGGGCCTATGTTTCTGATTGTCGCGGGTGGGTCAAGCTTATCCTATGGATANACTATTATACACGTCCACATCTTTACACAACATACACACATCTATATGTATACACATACGTAGCATTGCTATAAAAATGCCATCGGAGAGACACATATCGTCCCGTCGTGTGGGACATGATTTAAAAAAAAATCAAAAAACCTAACTCAGAGCTAGGCCGAAGCCAGCAGATACATATGCAGGCTATGTGACNAAGTGCCTCTATCTCTGCGCAAGTGACNNGGCAAAAGGGGTATCAGGAGCGTGTGGGATAGCTGTCTACTCGCTAGCTGCAANACGCAAATGACAANNGTAATAAAACAGAGAAAAGGACGGANAAAGCAACAACGATNAGGCCTACCTCAGCAGGTAGGCAGAACGTGGACANTGGAGCGTAANACNCGNNACAACNA]
[+] EMBL AL930911 [AGAATCCCCGACGGTTATACACACGAAGTAACAGAACATANCATGTGTTCGCCTGTAAGGGCCACCACTTGAAGGTTAGATGCTCGGGATCCAATTTTGATCATCAACGATGGTAGTAGGCCTAGAGTTAGCTTTATTTCGCTGCTCCGCACCGGTCAGTTGAGGCTTCACATATCAGGCGACACTATTGGCAAGTGACTATAAGGTCTCTGTTCCCCCCTATAAATAGGGCCTATGTTTCTGATTGTCGCGGGTGGGTCAAGCTTATCCTATGGATANACTATTATACACGTCCACATCTTTACACAACATACACACATCTATATGTATACACATACGTAGCATTGCTATAAAAATGCCATCGGAGAGACACATATCGTCCCGTCGTGTGGGACATGATTTAAAAAAAAATCAAAAAACCTAACTCAGAGCTAGGCCGAAGCCAGCAGATACATATGCAGGCTATGTGACNAAGTGCCTCTATCTCTGCGCAAGTGACNNGGCAAAAGGGGTATCAGGAGCGTGTGGGATAGCTGTCTACTCGCTAGCTGCAANACGCAAATGACAANNGTAATAAAACAGAGAAAAGGACGGANAAAGCAACAACGATNAGGCCTACCTCAGCAGGTAGGCAGAACGTGGACANTGGAGCGTAANACNCGNNACAACNA]
consensusID : consensus_7301#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 83 fasta sequence
[CAAAAAGAAGCGGATACACACGAAGTAACAGCAAAATAGCAAGGGGTCCGCCGGTAAGGGCCACCACTTGAAGGGTAGATGCA]
[+] EMBL BX612340 [CAAAAAGAAGCGGATACACACGAAGTAACAGCAAAATAGCAAGGGGTCCGCCGGTAAGGGCCACCACTTGAAGGGTAGATGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7301#0 ATATGCATATCGTTTGCCTGCTGGCGGAGCGAAAATGGAAAATGGGAAACTGGACGAAAA 60
consensus_7301#2 ------------------------------------------------------------
consensus_7301#1 ------------------------------------------------------------
consensus_7301#0 GATTACGTATTTTCATATAAGTATGCCTTTTTAAGACCTAGTAATTATTGTTGTCGAACA 120
consensus_7301#2 ------------------------------------------------------------
consensus_7301#1 ------------------------------------------------------------
consensus_7301#0 GTTTACGGTTCGACTGCCGGTGAGCGCGCCACTACAGGCCATGAGCAGGAGACAAGTTAA 180
consensus_7301#2 ------------------------------------------------------------
consensus_7301#1 ------------------------------------------------------------
consensus_7301#0 TGCTTCTTCTTTTTTCTCCTTCGGTCATTTAAAACAGAAAAATTCATGCACTCAAAAACT 240
consensus_7301#2 ------------------------------------------------------------
consensus_7301#1 ------------------------------------------------------------
consensus_7301#0 CGGAAAGAGCACTGATCGAAATGCATGTTTGAATAAAAACTGAAACAAAAA----GACGC 296
consensus_7301#2 ---------------------------------------------CAAAAA----GAAGC 11
consensus_7301#1 ----------------------------------------------AGAATCCCCGACGG 14
* ** ** *
consensus_7301#0 GCATACACACGAAGTAACAGCAAAATAGCAATGTGTTCGCCTGTAAGGGCCACCACTTGA 356
consensus_7301#2 GGATACACACGAAGTAACAGCAAAATAGCAAGGGGTCCGCCGGTAAGGGCCACCACTTGA 71
consensus_7301#1 TTATACACACGAAGTAACAG-AACATANCA-TGTGTTCGCCTGTAAGGGCCACCACTTGA 72
****************** ** *** ** * ** **** ******************
consensus_7301#0 AGGTTGAATGCTCGGGTTCCAATTTTGATCATCAACGATGGTAGTAGGCCTAGTGTTAGC 416
consensus_7301#2 AGGGTAGATGCA------------------------------------------------ 83
consensus_7301#1 AGGTTAGATGCTCGGGATCCAATTTTGATCATCAACGATGGTAGTAGGCCTAGAGTTAGC 132
*** * ****
consensus_7301#0 TTTATTTCGCTGCTCCGCTCCGGTCAGTTGAGGCTTCACATATC-GGCGACACTATTGGC 475
consensus_7301#2 ------------------------------------------------------------
consensus_7301#1 TTTATTTCGCTGCTCCGCACCGGTCAGTTGAGGCTTCACATATCAGGCGACACTATTGGC 192
consensus_7301#0 AAGTGACTATTGATTCGTTCCCCCATTTTT--------GGGCCTTGTTTTGATTGTCGCG 527
consensus_7301#2 ------------------------------------------------------------
consensus_7301#1 AAGTGACTATAAGGTCTCTGTTCCCCCCTATAAATAGGGCCTATGTTTCTGATTGTCGCG 252
consensus_7301#0 GGTTGGTCAAGCTTATCCT-----TGATTCTTTTTACACGTCCACATCTTTACACA-CAT 581
consensus_7301#2 ------------------------------------------------------------
consensus_7301#1 GGTGGGTCAAGCTTATCCTATGGATANACTATTATACACGTCCACATCTTTACACAACAT 312
consensus_7301#0 ACACACATCTATATGTATACACATACGTAGCATTGCTATAAAAATGCCATCGGAGAGACA 641
consensus_7301#2 ------------------------------------------------------------
consensus_7301#1 ACACACATCTATATGTATACACATACGTAGCATTGCTATAAAAATGCCATCGGAGAGACA 372
consensus_7301#0 CATTCGTCCTGTGTGTGGGAATGATTAAAAAAAAATCAAAAAAACTAACTAGAGCTAGGC 701
consensus_7301#2 ------------------------------------------------------------
consensus_7301#1 CATATCGTCCCGTCGTGTGGGACATGATTTAAAAAAAAATCAAAAAACCTAACTCAGAGC 432
consensus_7301#0 CGAAGCAGCAGATAAATATGCAGGCTTGTGAGAAGTGCCTCTTCTTGGAAGCGACAGGAA 761
consensus_7301#2 ------------------------------------------------------------
consensus_7301#1 TAGGCCGAAGCCAGCAGATACATATGCAGGCTATGTGACNAAGTGCCTCTATCTCTGCGC 492
consensus_7301#0 GAGGGGTTCAGGAGCGTGTGGGATGCTGTTACTGCTGCTGAAACGCAAATGACAATGTAA 821
consensus_7301#2 ------------------------------------------------------------
consensus_7301#1 AAGTGACNNGGCAAAAGGGGTATCAGGAGCGTGTGGGATAGCTGTCTACTCGCTAGCTGC 552
consensus_7301#0 TAAAACAGAGAAAAGGACGGAAAAAGCAACAACGATCGGCCCTACTCAGTAGGTAGAACG 881
consensus_7301#2 ------------------------------------------------------------
consensus_7301#1 AANACGCAAATGACAANNGTAATAAAACAGAGAAAAGGACGGANAAAGCAACAACGATNA 612
consensus_7301#0 TGGCAGTGGAGCGTAATACAGAAGAAAAACGAAAACAGTGAGATGGGCAGTGTTTTCTTT 941
consensus_7301#2 ------------------------------------------------------------
consensus_7301#1 GGCCTACCTCAGCAGGTAGGCAGAACGTGGACANTGGAGCGTAANACNCGNNACAACNA- 671
consensus_7301#0 TAAACCCTTTGTATAGCGATAATGTAGTAGAGCATATTGGACAGCCAAACACACTCACTA 1001
consensus_7301#2 ------------------------------------------------------------
consensus_7301#1 ------------------------------------------------------------
consensus_7301#0 GCTACGCCCTAGCACGACAGAGAGGAGCAATGTTCAGTTTTGAAATGATAACGACGATGA 1061
consensus_7301#2 ------------------------------------------------------------
consensus_7301#1 ------------------------------------------------------------
consensus_7301#0 TCAGGACACATTCAAGCAGATAACACGTGCACAGAAGTAAAGGGATACGACAGACAGGAG 1121
consensus_7301#2 ------------------------------------------------------------
consensus_7301#1 ------------------------------------------------------------
consensus_7301#0 AGACAGTGTAACAGCAACAGGTTTGATCGTTAAGCGGCACACAGGAGGTGCGATTTTATA 1181
consensus_7301#2 ------------------------------------------------------------
consensus_7301#1 ------------------------------------------------------------
consensus_7301#0 ACGTTTCATTATGCGACTATGAATGAATGCTATCGATAAATATTTAACTAAGCGAGACAA 1241
consensus_7301#2 ------------------------------------------------------------
consensus_7301#1 ------------------------------------------------------------
consensus_7301#0 AACAAAACAACAACCGGTTTAGTGCAGAGAATAAAAATCAATAACCAATTCAAAAAAAAA 1301
consensus_7301#2 ------------------------------------------------------------
consensus_7301#1 ------------------------------------------------------------
consensus_7301#0 AAAAAAACCCACGCGTCCGCGG 1323
consensus_7301#2 ----------------------
consensus_7301#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||