These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7312#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1116 fasta sequence [GAGGGCACGCAGCTACATCGCGATAAAGTTCGGCAGTTAAAGATGTCTCCCCCGGCGAGCTCCAACAACTATT-CCGTCGAAAAACGTCCACCAAC-GTACGATCAGTATGAGTTTACCCTGCCCGACCT-GTACCGCAAGATGGCAAAGGATGAGCTCCGCGAGGACGACGAGATTCGGGAGCAATCGTTAACGCAAATGAGGGAGTGGATTGCCAAACATCCGTACATTCGCAAGTGCCGTACGGATGCGTCGTTTCTGTTGCGCTTTTTGCGCTTCCGAAAGTACTCCGTGCCGATGGCGTGTGAGGCGCTGGAGCGATACCTTGCGATGCGCGAAACGTTTCCTACGTGGTTTAAGAAGCTGGACTGCAACGATCCGGCAATGCGAGAGCTGTTCGCGGACGGTGTGTTCACGAAGCTGGGACAAGATTCGGAGGGCCGCATGGTGATCCTGTTCCGCGTGAAGCAGCTGAACGTGGACAAGTTTGGACCGCTGGAGCAGGGCCGGCTGGTGGCGCTGCTGATTGAGGCACTGCTCGAGTGGGAAGAGCTACAGATCGGTGGCTTCCGGGTGATGCTTGACTTCACCGACACCGTCATGAAGCACTACGGTATGTGGGGCGTCTCCGACATGAAGATCTTCATGGATGCGATCAACCGCTCGTACCCTATACGGTTCCGCGAGATTAATGGTGCCAAGTTTCCCAAGTTTGCTGTTTCGATACTGAACCTGCTGCTAACGTTCGCCAGTCCCAAGCTGAAGGAACGAATAGTTTGTCACAATACGGTGCTGGAGATGAAGGGAAAATTCGAACCTTCGCTACTACCACAGTCGTACGGTAGTGAGCTGGATACGGAGGAGATGGGGCGCAAATTTTTGAAACATCTCGAGGATCGTCGGAACGTGATACTGGCGCTGGATGATATGGATATCGATGTAGCACACTACTCTTCGCTGTGGAGCCAAACAAACTTGGTGGAAAATGAGGTCGAGGGCGGTGTGGCCGGTAGCTTCCGGAAGCTGAATGTAGATTAGTTGTCCGAATACAAGGATAAAGATTGTAGGTTGTAAGATCACAAGAAACGGGATAGAGTTATAATAAAATCATTCGAATTT] [+] EMBL AL934535 [GAGGGCACGCAGCTACATCGCGATAAAG TCGGCAGTTAAAGATGTCTCCCCCGGCGAGCTCCAACAACTATTCCCGTCGAAAAACGTCCACCAACGGTACGATCAGTATGAGTTTACCCTGCCCGACCTGGTACCGCAAGATGGCAAAGGATGAGCTCCGCGAGGACGACGAGATTCGGGAGCAATCGTTAACGCAAATGAGGGAGTGGATTGCCAAACATCCGTACATTCGCAAGTGCCGTACGGATGCGTCGTTTCTGTTGCGCTTTTTGCGCTTCCGAAAGTACTCCGTGCCGATGGCGTGTGAGGCGCTGGAGCGATACCTTGCGATGCGCGAAACGTTTCCTACGTGGTTTAAGAAGCTGGACTGCAACGATCCGGCAATGCGAGAGCTGTTCGa ] [+] EMBL CNS09NXB [ CTACATCACGATAAAGTTCGGCAGTTAAAGATGTCTCCCCCGGCGAGCTCCAACAACTATT CCGTCGAAAAACGTCCACCAAC GTACGATCAGTATGAGTTTACCCTGCCCGATCT GTACCGCAAGATGGCAAAGGATGAGCTCCGCGAGGACGACGAGATTCGGGAGCAATCGTTGACGCAAATGAGGGAGTGGATTGCCAAACATCCGTACATTCGCAAGTGCCGAACGGATGCATCGTTTCTGTTGCGCTTTTTGCGCTTCCGAAAGTACTCCGTACCGATGGCGTGTGAGGCGCTGGAGCGATACCTTGCGATGCGCGAAACGTTTCCTACGTGGTTTAAGAAGCTGGACTGCAACGATCCGGCAATGCGAGAGCTGTTCGCGGACGGTGTGTTCACGAAGCTGGGACAAGATTCGGAGGGCCGCATGGTGATCCTGTTCCGCGTGAAGCAGCTGAACGTGGACAAGTTTGGACCGCTGGAGCAGGGCCGGCTGGTGGCGCTGCTGATTGAGGCACTGCTCGAGTGGGAAGAGCTACAGATCGGTGGCTTCCGGGTGATGCTTGACTTCACCGACACCGTCATGAAGCACTACGGTATGTGGGGCGTCTCCGACATGAAGATCTTCATGGATGCGATCAACCGCTCGTACCCTATACGGTTCCGCGAGATTAATGGTGCCAAGTTTCCCAAGTTTGCTGTTTCGATACTGAACCTGCTGCTAACGTTCGCCAGTCCCAAGCTGAAGGAACGAATAGTTTGTCACAATACGGTGCTGGAGATGAAGGGAAAATTCGAACCTTCGCTACTACCACAGTCGTACGGTAGTGAGCTGGATACGGAGGAGATGGGGCGCAAATTTTTGAAACATCTCGAGGATCGTCGGAACGTGATACTGGCGCTGGATGATATGGATATCGATGTAGCACACTACTCTTCGCTGTGGAGC ] [+] EMBL BX625093 [ CGATAAAGTTCGGCAGTTAAAGATGTCTCCCCCGGCGAGCTCCAACAACTATT CCGTCGAAAAACGTCCACCAAC GTACGATCAGTATGAGTTTACCCTGCCCGACCT GTACCGCAAGATGGCAAAGGATGAGCTCCGCGAGGACGACGAGATTCGGGAGCAATCGTTAACGCAAATGAGGGAGTGGATTGCCAAACATCCGTACATTCGCAAGTGCCGTACGGATGCGTCGTTTCTGTTGCGCTTTTTGCGCTTCCGAAAGTACTCCGTGCCGATGGCGTGTGAGGCGCTGGAGCGATACCTTGCGATGCGCGAAACGTTTCCTACGTGGTTTAAGAAGCTGGACTGCAACGATCCGGCAATGCGAGAGCTGTTCGAGGACGGTGTGTTCACGAAGCTGGGACAAGATTCGGAGGGCCGCATGGTGATTCTGTTCCGCGTGAAGCAGCTGAACGTGGACAAGTTTGGACCGCTGGAGCAGGGCCGGCTGGTGGCGCTGCTGATTGAGGCACTGCTCGAGTGGGAAGAGCTACAGATCGGTGGCTTCCGGGTGATGCTGGACTTCACCGACACCGTCATGAAGCACTACGGTATGTGGGGCGTCTCCGACATGAAGATCTTCATGGATGCGATCAACCGCTCGTACCCTATACGGTTCCGCGAGATTAATGGTGCCAAGTTTCCCAAGTTTGCTGTTTCGATACTGAACCTGCTGCTAACGTTCGCCAGTCCC AGCTGAAGGAACGAAT ] [+] EMBL BX613525 [ AAAGTACTCCGTACCAATGGCGTGTGAGGCGCTGGAGCGATACCTTGCGATGCGCGAAACGTTTCCTACGTGGTTCAAGAAGCTGGACTGCAACGATCCGGCAATGCGAGAGCTGTTCGCGGACGGTGTGTTCACGAAGCTGGGACAAGATTCGGAGGGCCGCATGGTGATCCTGTTCCGCGTGAAGCAGCTGAACGTGGACAAGTTTGGACCGCTGGAGCAGGGCCGGCTGGTGGCGCTGCTGATTGAGGCACTGCTCGAGTGGGAAGAGCTACAGATCGGTGGCTTCCGGGTGATGCTTGACTTCACCGACACCGTCATGAAGCACTACGGTATGTGGGGCGTCTCCGACATGAAGATCTTCATGGATGCGATCAACCGCTCGTACCCTATACGGTTCCGCGAGATTAATGGTGCCAAGTTTCCCAAGTTTGCTGTTTCGATACTGAACCTGCTCCTAACGTTCGCCAGTCCCAAGCTGAAGGAACGAATAGTTTGTCACAATACGGTGCTGGAGATGAAGGGAAAATTCGAACCTTCGCTACTACCACAGTCGTACGGTGGTGAGCTGGATACGGAGGAGATGGGGCGCAAATTTTTGAAACATCTCGAGGATCGTCGGAACGTGATACTGGCGCTGGATGATATGGATATCGATGTAGCACACTACTCTTCGCTGTGGAGCCAAACAAACTTGGTGGAAAATGAGGTCGAGGGCGGTGTGGCCGGTAGCTTCCGGAAGCTGAATGTAGATTAGTTGTCCGAATACAAGGATAAAGATTGTAGGTTGTAAGATCACAAGAAACGGGATAGAGTTATAATAAAAT ] [+] EMBL BX627533 [ GTGTGAGGCGCTGGAGCGATACCTTGCGATGCGCGAAACGTTTCCTACGTGGTCCAAGAAGCTGGACTGCAACGATCCGGCAATGCGAGAGCTGTTCGCGGACGGTGTGTTCACGAAGCTGGGACAAGATTCGGAGGGCCGCATGGTGATCCTGTTCCGCGTGAAGCAGCTGAACGTGGACAAGTTTGGACCGCTGGAGCAGGGCCGGCTGGTGGCGCTGCTGATTGAGGCACTGCTCGAGTGGGAAGAGCTACAGATCGGAGGCTTCCGGGTGATGCTTGACTTCACCGACACCGTCATGAAGCACTACGGTATGTGGGGCGTCTCCGACATGAAGATCTTCATGGATGCGATCAACCGCTCGTACCCTATACGGTTCCGCGAGATTAATGGTGCCAAGTTTCCCAAGTTTGCTGTTTCGATACTGAACCTGCTGCTAACGTTCGCCAGTCCCAAGCTGAAGGAACGAATAGTTTGTCACAATACGGTGCTGGAGATGAAGGGAAAATTCGAACCTTCGCTACTACCACAGTCGTACGGTGGTGAGCTGGATACGGAGGAGATGGGGCGCAAATTTTTGAAACATCTCGAGGATCGTCGGAACGTGATACTGGCGCTGGATGATATGGATATCGATGTAGCACACTACTCTTCGCTGTGGAGCCAAACNAACTTGGTGGAAAATGAGGTCGAGGGCGGT ] [-] EMBL CNS09NXC [ TGTGGGGCGTCTCCGACATGAAGATCTTCATGGATGCGATCAACCGCTCGTACCCTATACGGTTCCGCGAGATTAATGGTGCCAAGTTTCCCAAGTTTGCTGTTTCGATACTGAACCTGCTGCTAACGTTCGCCAGTCCCAAGCTGAAGGAACGAATAGTTTGTCACAATACGGTGCTGGAGATGAAGGGAAAATTCGAACCTTCGCTACTACCACAGTCGTACGGTAGTGAGCTGGATACGGAGGAGATGGGGCGCAAATTTTTGAAACATCTCGAGGATCGTCGGAACGTGAAACTGGCGCTGGATGATATGGATATCGATGTAGCACACTACTCTTCGCTGTGGAGCCAAACAAACTTGGTGGAAAATGAGGTCGAGGGTGGTGTGGCCGGTAGCTTCCGAAAGCTGAATGTAGATTAGTTGTCCGAATACAAGGATAAAGATTGTAGGTTGTAAGATAACAAGAAACGGGATAGAGTTATAATAAATCCATTCGAATTT] consensusID : consensus_7312#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [GGGAGCAATCGTTGACGCAGATGCGGGAGTGGATTGCCAAACATCCGTACATTCGCAAGTGCCGTACGGATGCGTCGTTTCTGTTGCGCTTTTTGCGCTTCCGAAAGTACTCCGTACCGATGGCGTGTGAGGCGCTGGAGCGATACCTTGCGATGCGTGAGACCTTTCCGCAGTGGTTTAAGAATCTTGATTGCAATGACTCCGCAATGCGAGAAATGCTTCAGGACGGTGTGTTTACGAAGCTCGGCCAAGATGCCGAGGGCAGGACGGTGATCCTCTTCCGGTTTGCCCGTTTCAATGTGGACAAGTTTACCTCACTGCAGGAAGGTCGCTTTACGGTGCTGCTCATCGAGACGCTGCTCGAGTGTGAAGAGCTGCAGATCGGTGGCTTTCGGGTGCTAATCGATTATACTGGCTCAGTGTTAAAGCACTACGGCATTTGGGGCGTTTCGGACATGAAGGTGTTTACGGATGCGATCAACCGCTCCTACCCGATACGGATCCGTGAGGTGCATGGTGCCAAGTTTCCCAAGTTTGCTGTTTCGTTACTCAACTTGCTGCTGACGTTCGCTAGCCCAAAGTTGAAGGACCGCATCACATGTC] [+] EMBL BX617344 [GGGAGCAATCGTTGACGCAGATGCGGGAGTGGATTGCCAAACATCCGTACATTCGCAAGTGCCGTACGGATGCGTCGTTTCTGTTGCGCTTTTTGCGCTTCCGAAAGTACTCCGTACCGATGGCGTGTGAGGCGCTGGAGCGATACCTTGCGATGCGTGAGACCTTTCCGCAGTGGTTTAAGAATCTTGATTGCAATGACTCCGCAATGCGAGAAATGCTTCAGGACGGTGTGTTTACGAAGCTCGGCCAAGATGCCGAGGGCAGGACGGTGATCCTCTTCCGGTTTGCCCGTTTCAATGTGGACAAGTTTACCTCACTGCAGGAAGGTCGCTTTACGGTGCTGCTCATCGAGACGCTGCTCGAGTGTGAAGAGCTGCAGATCGGTGGCTTTCGGGTGCTAATCGATTATACTGGCTCAGTGTTAAAGCACTACGGCATTTGGGGCGTTTCGGACATGAAGGTGTTTACGGATGCGATCAACCGCTCCTACCCGATACGGATCCGTGAGGTGCATGGTGCCAAGTTTCCCAAGTTTGCTGTTTCGTTACTCAACTTGCTGCTGACGTTCGCTAGCCCAAAGTTGAAGGACCGCATCACATGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7312#0 GAGGGCACGCAGCTACATCGCGATAAAGTTCGGCAGTTAAAGATGTCTCCCCCGGCGAGC 60 consensus_7312#1 ------------------------------------------------------------ consensus_7312#0 TCCAACAACTATTCCGTCGAAAAACGTCCACCAACGTACGATCAGTATGAGTTTACCCTG 120 consensus_7312#1 ------------------------------------------------------------ consensus_7312#0 CCCGACCTGTACCGCAAGATGGCAAAGGATGAGCTCCGCGAGGACGACGAGATTCGGGAG 180 consensus_7312#1 -------------------------------------------------------GGGAG 5 ***** consensus_7312#0 CAATCGTTAACGCAAATGAGGGAGTGGATTGCCAAACATCCGTACATTCGCAAGTGCCGT 240 consensus_7312#1 CAATCGTTGACGCAGATGCGGGAGTGGATTGCCAAACATCCGTACATTCGCAAGTGCCGT 65 ******** ***** *** ***************************************** consensus_7312#0 ACGGATGCGTCGTTTCTGTTGCGCTTTTTGCGCTTCCGAAAGTACTCCGTGCCGATGGCG 300 consensus_7312#1 ACGGATGCGTCGTTTCTGTTGCGCTTTTTGCGCTTCCGAAAGTACTCCGTACCGATGGCG 125 ************************************************** ********* consensus_7312#0 TGTGAGGCGCTGGAGCGATACCTTGCGATGCGCGAAACGTTTCCTACGTGGTTTAAGAAG 360 consensus_7312#1 TGTGAGGCGCTGGAGCGATACCTTGCGATGCGTGAGACCTTTCCGCAGTGGTTTAAGAAT 185 ******************************** ** ** ***** ************ consensus_7312#0 CTGGACTGCAACGATCCGGCAATGCGAGAGCTGTTCGCGGACGGTGTGTTCACGAAGCTG 420 consensus_7312#1 CTTGATTGCAATGACTCCGCAATGCGAGAAATGCTTCAGGACGGTGTGTTTACGAAGCTC 245 ** ** ***** ** * *********** ** * ************ ******** consensus_7312#0 GGACAAGATTCGGAGGGCCGCATGGTGATCCTGTTCCGCGTGAAGCAGCTGAACGTGGAC 480 consensus_7312#1 GGCCAAGATGCCGAGGGCAGGACGGTGATCCTCTTCCGGTTTGCCCGTTTCAATGTGGAC 305 ** ****** * ****** * * ********* ***** * * * ** ****** consensus_7312#0 AAGTTTGGACCGCTGGAGCAGGGCCGGCTGGTGGCGCTGCTGATTGAGGCACTGCTCGAG 540 consensus_7312#1 AAGTTTACCTCACTGCAGGAAGGTCGCTTTACGGTGCTGCTCATCGAGACGCTGCTCGAG 365 ****** * *** ** * ** ** * ** ****** ** *** * ********* consensus_7312#0 TGGGAAGAGCTACAGATCGGTGGCTTCCGGGTGATGCTTGACTTCACCGACACCGTCATG 600 consensus_7312#1 TGTGAAGAGCTGCAGATCGGTGGCTTTCGGGTGCTAATCGATTATACTGGCTCAGTGTTA 425 ** ******** ************** ****** * * ** * ** * * * ** * consensus_7312#0 AAGCACTACGGTATGTGGGGCGTCTCCGACATGAAGATCTTCATGGATGCGATCAACCGC 660 consensus_7312#1 AAGCACTACGGCATTTGGGGCGTTTCGGACATGAAGGTGTTTACGGATGCGATCAACCGC 485 *********** ** ******** ** ********* * ** * **************** consensus_7312#0 TCGTACCCTATACGGTTCCGCGAGATTAATGGTGCCAAGTTTCCCAAGTTTGCTGTTTCG 720 consensus_7312#1 TCCTACCCGATACGGATCCGTGAGGTGCATGGTGCCAAGTTTCCCAAGTTTGCTGTTTCG 545 ** ***** ****** **** *** * ******************************** consensus_7312#0 ATACTGAACCTGCTGCTAACGTTCGCCAGTCCCAAGCTGAAGGAACGAATAGTTTGTCAC 780 consensus_7312#1 TTACTCAACTTGCTGCTGACGTTCGCTAGCCCAAAGTTGAAGGACCGCATCACATGTC-- 603 **** *** ******* ******** ** ** *** ******* ** ** **** consensus_7312#0 AATACGGTGCTGGAGATGAAGGGAAAATTCGAACCTTCGCTACTACCACAGTCGTACGGT 840 consensus_7312#1 ------------------------------------------------------------ consensus_7312#0 AGTGAGCTGGATACGGAGGAGATGGGGCGCAAATTTTTGAAACATCTCGAGGATCGTCGG 900 consensus_7312#1 ------------------------------------------------------------ consensus_7312#0 AACGTGATACTGGCGCTGGATGATATGGATATCGATGTAGCACACTACTCTTCGCTGTGG 960 consensus_7312#1 ------------------------------------------------------------ consensus_7312#0 AGCCAAACAAACTTGGTGGAAAATGAGGTCGAGGGCGGTGTGGCCGGTAGCTTCCGGAAG 1020 consensus_7312#1 ------------------------------------------------------------ consensus_7312#0 CTGAATGTAGATTAGTTGTCCGAATACAAGGATAAAGATTGTAGGTTGTAAGATCACAAG 1080 consensus_7312#1 ------------------------------------------------------------ consensus_7312#0 AAACGGGATAGAGTTATAATAAAATCATTCGAATTT 1116 consensus_7312#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||