These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7314#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 976 fasta sequence [GCAGATCGCGCACGAGGTCAGTAAGCAAAGCGAGCAAACCGTGCCGCTGCTAATACCGTGCGTTGAACGTAGCGCCGATGGTGAAGCCTTGCTCCGTCAAAGAGGTAGCGCAGAAGACCAATGCTGCCCCTGCCGCTCAGCCGCCGCCCGCGGAGAGTGGGAAATCGGCAGAAGAAAACTTAAACCCCGACGTGCCGGAATTCGTTCCGGCGGCGCGCAAGTAGTAAATAAGCCACCGAAAAGTAAAGCGAACGAGAAAAAGCAGCCCAATCCACCACCTGCTGCTGCTGGTGACGGTCGGGCCGCGGCCGGCGGACGCCCACGGCCGGCTGATGGAACCGCCCGCCCGCAATGCGATGTGGCGCTTCGGCTTCCCGAACCCGGTCAACTACAACGACAACGAGCTGTTCTGCGGCGGGTACGCGGTCCAGTGGGAGCAGAACCAGGGCAACTGTGGCGTGTGCGGCGACGCGTACCATCTGCGGGCGCCCCGGCCGCACGAGGCCGGCGGCGAGTACGGCAAGGGCATCGTGTCGCGCCGGTACGTGGCCGGCCAGGAGCTGGAGGTCGAGATCGAGGCTGACCGCAACCATATGGGCCGGTTCGAGCTGTACCTCTGCCCGAACAACAACCCGCGGGCGGGAGGGCAACGCAGGGACTTGCTTTCCGATCGCTAACCCGGGTTCTAACTTGTTCCCGGGGACGGCGCGAGGTCCGGGTTCCTTCCATACCCGGCCCGACTCGAAGAAGCAAGGACCGGTTGTTTCCCCGGGGTTAACCCCCGGGGGGTTTNGCCAAGCCTTGGACACGGCTAGTCCTTACACGGTTTGAAAGCCTTGNGACACGCNCCAGATTGTGCGCTGTTTCATTCGCAANGTTGGGNACCCTACATTTTCACACCCGGGGGCAACAACAACTTTCTTTGNGGGACCCCCGGTTGGCGAACAAAACAGGGGGAAACCANAAGATCCGGGAC] [+] EMBL BX467472 [GCAGATCGCGCACGAGGTCAGTAAGCAAAGCGAGCAAACCGTGCCGCTGCTAATACCGTGCGTTGAACGTAGCGCCGATGGTGAAGCCTTGCTCCGTCAAAGAGGTAGCGCAGAAGACCAATGCTGCCCCTGCCGCTCAGCCGCCGCCCGCGGAGAGTGGGAAATCGGCAGAAGAAAACTTAAACCCCGACGTGCCGGAATTCGTTCCGGCGGCGCGCAAGTAGTAAATAAGCCACCGAAAAGTAAAGCGAACGAGAAAAAGCAGCCCAATCCACCACCTGCTGCTGCTGGTGACGGTCGGGCCGCGGCCGGCGGACGCCCACGGCCGGCTGATGGAACCGCCCGCCCGCAATGCGATGTGGCGCTTCGGCTTCCCGAACCCGGTCAACTACAACGACAACGAGCTGTTCTGCGGCGGGTACGCGGTCCAGTGGGAGCAGAACCAGGGCAACTGTGGCGTGTGCGGCGACGCGTACCATCTGCGGGCGCCCCGGCCGCACGAGGCCGGCGGCGAGTACGGCAAGGGCATCGTGTCGCGCCGGTACGTGGCCGGCCAGGAGCTGGAGGTCGAGATCGAGGCTGACCGCAACCATATGGGCCGGTTCGAGCTGTACCTCTGCCCGAACAACAACCCGCGGGCGGGAGGGCAACGCAGGGACTTGCTTTCCGATCGCTAACCCGGGTTCTAACTTGTTCCCGGGGACGGCGCGAGGTCCGGGTTCCTTCCATACCCGGCCCGACTCGAAGAAGCAAGGACCGGTTGTTTCCCCGGGGTTAACCCCCGGGGGGTTTNGCCAAGCCTTGGACACGGCTAGTCCTTACACGGTTTGAAAGCCTTGNGACACGCNCCAGATTGTGCGCTGTTTCATTCGCAANGTTGGGNACCCTACATTTTCACACCCGGGGGCAACAACAACTTTCTTTGNGGGACCCCCGGTTGGCGAACAAAACAGGGGGAAACCANAAGATCCGGGAC] consensusID : consensus_7314#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 886 fasta sequence [GAACTGGGCAGGATTTCCAAGACTTCACCGCGGGTGAACACCAAAATCCGGTACCGACCAGGCGGCGTTCATCATGCCTTATCTAAGCACGTTCTACTACAACGGTGCGCCATTGATAGGAATGGATCAGCTGAGCATTAAGGAGTGTATTAAAAAGCAAATTGAATATTACTTTAGCGAGGAAAATCTAAATCGTGATTTCTACCTGCGGCGAAAAATGGACCCGGAGGGCTTCCTTCCGGTTACGCTTATCGCATCGTTCCATCGAGTGCAAGCGCTCACCGACGATATTGACATAATCACCGAAGCAATCAAGGAATCGGAAAAGCTGGAGCTGATCGAAGACTACAAGGTGCGCACGCGCGTCAACCCCACGATGTGGCCAATCGATCACTCGGTCACGATCGTGAATGGTGCGATGAACTTCGGAGTTACTTTCGCCGACCAGCAGCAGCAGCAGGACCGGACGTCGGCGTTGCCATCGCAGACGGTGCAGGGAGAGCAACAAGCGCCAGATGCTAAACCGGCCGGGCAAGAACAGCAGC-AACAGGGGGCGGCGGCGAC-GGCGGCGGCGGTTCCTGCGCCGACA-TCGGTTCCGGTCGCTGGCGACGGAGCCGATGTCGCAGCCGTGCCGCAGCTGCA-GGTGGCCTCGAAGATCCTGTCTAGTATTCCACCACCCCCGTTACCGAGAAATATTCGCAACCCAGTAAGCAAAGCGAGCAAAACCGTGCCGCTGCTAATACCGTGCGTGAACGTAGCGCCGATGGTGAAGCCTTGCTCCGTCAAAGAGGTAGCGCAGAAGACCAATGCTGCCCCTGCCGCTCAGCCGCCGCCCGCGGAGAGTGGGAAATCGGCAGAAGAAAACTTAAACCCCGACGTGCCGGAA] [-] EMBL BM591654 [GAACTGGGCAGGATTTCCAAGACTTCACCGCGGGTGAACACCAAAATCCGGTACCGACCAGGCGGCGTTCATCATGCCTTATCTAAGCACGTTCTACTACAACGGTGCGCCATTGATAGGAATGGATCAGCTGAGCATTAAGGAGTGTATTAAAAAGCAAATTGAATATTACTTTAGCGAGGAAAATCTAAATCGTGATTTCTACCTGCGGCGAAAAATGGACCCGGAGGGCTTCCTTCCGGTTACGCTTATCGCATCGTTCCATCGAGTGCAAGCGCTCACCGACGATATTGACATAATCACCGAAGCAATCAAGGAATCGGAAAAGCTGGAGCTGATCGAAGACTACAAGGTGCGCACGCGCGTCAACCCCACGATGTGGCCAATCGATCACTCGGTCACGATCGTGAATGGTGCGATGAACTTCGGAGTTACTTTCGCCGACCAGCAGCAGCAGCAGGACCGGACGTCGGCGTTGCCATCGCAGACGGTGCAGGGAGAGCAACAAGCGCCAGATGCTAAACCGGCCGGGCAAGAACAGCAGC AACAGGGGGCGGCGGCcgg ] [+] EMBL BM591332 [ ccgCATTGATAGGAATGGATCAGCTGAGCATTAAGGAGTGTATTAAAAAGCAAATTGAATATTACTTTAGCGAGGAAAATCTAAATCGTGATTTCTACCTGCGGCGAAAAATGGACCCGGAGGGCTTCCTTCCGGTTACGCTTATCGCATCGTTCCATCGAGTGCAAGCGCTCACCGACGATATTGACATAATCACCGAAGCAATCAAGGAATCGGAAAAGCTGGAGCTGATCGAAGACTACAAGGTGCGCACGCGCGTCAACCCCACGATGTGGCCAATCGATCACTCGGTCACGATCGTGAATGGTGCGATGAACTTCGGAGTTACTTTCGCCGACCAGCAGCAGCAGCAGGACCGGACGTCGGCGTTGCCATCGCAGACGGTGCAGGGAGAGCAACAAGCGCCAGATGCTAAACCGGCCGGGCAAGAACAGCAGCAAACAGGGGGCGGCGGCGACGGGCGGCGGCGGTTCCTGCGCC ACATTCGGTTCCGGTCGCTGGCGACGGAGCCGATGTCGCAGCCGTGCCGCAGCTGCAGGGGGGCCTCGAAGATCCTGCCTAGTATTCCACCACCCCCGTTACCGAGAAATATTCGCAACCCAGTAAGCAAAGCGAGCAAAACCGTGCCGCTGCTAATACCGTGCGTGAACGTAGCGCCGATGGTGAAGC ] [+] EMBL BM590984 [ ccgGGAGTGTATTAAAAAGCAAATTGAATATTACTTTAGCGAGGAAAATCTAAATCGTGATTTCTACCTGCGGCGAAAAATGGACCCGGAGGGCTTCCTTCCGGTTACGCTTATCGCATCGTTCCATCGAGTGCAAGCGCTCACCGACGATATTGACATAATCACCGAAGCAATCAAGGAATCGGAAAAGCTGGAGCTGATCGAAGACTACAAGGTGCGCACGCGCGTCAACCCCACGATGTGGCCAATCGATCACTCGGTCACGATCGTGAATGGTGCGATGAACTTCGGAGTTACTTTCGCCGACCAGCAGCAGCAGCAGGACCGGACGTCGGCGTTGCCATCGCAGACGGTGCAGGGAGAGCAACAAGCGCCAGATGCTAAACCGGCCGGGCAAGAACAGCAGC AACAGGGGGCGGCGGCGAC GGCGGCGGCGGTTCCTGCGCCGACA TCGGTTCCGGTCGCTGGCGACGGAGCCGATGTCGCAGCCGTGCCGCAGCTGCA GGTGGCCTCGAAGATCCTGTCTAGTATTCCACCACCCCCGTTACCGAGAAATATTCGCAACCCAGTAAGCAAAGCGAGCAAAACCGTGCCGCTGCTAATACCG ] [+] EMBL AGA285328 [ ATCGCATCGTTCCATCGAGTGCAAGCGCTCACCGACGATATTGACATAATCACCGAAGCAATCAAGGAATCGGAAAAGCTGGAGCTGATCGAAGACTACAAGGTGCGCACGCGCGTCAACCCCACGATGTGGCCAATCGATCACTCGGTCACGATCGTGAATGGTGCGATGAACTTTGGAGTTACTTTCGCCGACCAGCAGCAGCAGCAGGACCGGACGTCGGCGTTGCCATCGCAGACGGTGCAGGGAGAGCAACAAGCGTCAGATGCTAAACCGGCCGGGCAAGAACAGCAGC ATCAGGGGGCGGC ] [-] EMBL AGA284033 [ TGCGATGAACTTTGGAGTTACTTTCGCCGACCAGCAGCAGCAGCAGGACCGGACGTCGGCGTTGCCATCGCAGACGGTGCAGGGAGAGCAACAAGCGTCAGATGCTAAACCGGCCGGGCAAGAACAGCAGC AACAGGGGGCGGCGGCGAC GGCGGCGGCGGTTCCTGCGCCGACA TCGGTTCCGGTCGCTGGCGACGGAGCCGATGTCGCAGCCGTGCCGCAGCTGCA GGTGGCCTCGAAGATCCTGTCTAGTATTCCACCACCCCCGTTACCGAGAAATATTCGCAACCCAGTAAGCAAAGCGAGCAAAACCGTGCCGCTGCTAATACCGTGCGTGAACGTAGCGCCGATGGTGAAGCCTTGCTCCGTCAAAGAGGTAGCGCAGAAGACCAATGCTGCCCCTGCCGCTCAGCCGCCGCCCGCGGAGAGTGGGAAATCGGCAGAAGAAAACTTAAACCCCGACGTGCCGGAA] consensusID : consensus_7314#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [AAATAAGCCACCGAAAAGTAAAGCGAACGAGAAAAAACAGCCCAATCCACCATCGACTGCTGCTGGCGGTGGGAAGAAGGGTAAGGCGGCCCAACAGCATGGGAGTGGTAGCGAGGGAGGCAAGGAAGGCAAAACGGTGAAGGTGGACTAGAAGCCTGCGGAAGCAACTGCACAGCCGGAAGAGGAATCAGCCGAACAGCAGCAACAACAGCCACAACCATAGGCCGCCTTATTGAAGGAAGTGAATAGAAGATCTCGGTCGAGTCAATCTCACCCTCAGCAAGCACCAGCGCAGCAGCAGCAGCAGCAGCTCGCAAAACAATCATCATCGCAGCAGGCGAA] [+] EMBL AGA280944 [AAATAAGCCACCGAAAAGTAAAGCGAACGAGAAAAAACAGCCCAATCCACCATCGACTGCTGCTGGCGGTGGGAAGAAGGGTAAGGCGGCCCAACAGCATGGGAGTGGTAGCGAGGGAGGCAAGGAAGGCAAAACGGTGAAGGTGGACTAGAAGCCTGCGGAAGCAACTGCACAGCCGGAAGAGGAATCAGCCGAACAGCAGCAACAACAGCCACAACCATAGGCCGCCTTATTGAAGGAAGTGAATAGAAGATCTCGGTCGAGTCAATCTCACCCTCAGCAAGCACCAGCGCAGCAGCAGCAGCAGCAGCTCGCAAAACAATCATCATCGCAGCAGGCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7314#0 GCAGATCGCGCACGAGGTCAGTAAGCAAAGCGAGCAAACCGTGCCGCTGCTAATACCGTG 60 consensus_7314#1 ------------------------------------------------------------ consensus_7314#2 ------------------------------------------------------------ consensus_7314#0 CGTTGAACGTAGCGCCGATGGTGAAGCCTTGCTCCGTCAAAGAGGTAGCGCAGAAGACCA 120 consensus_7314#1 ----GAACTGGGCAG-GATTTCCAAGACTT-CACCGC----GGGTGAACACCAAAATCCG 50 consensus_7314#2 ------------------------------------------------------------ consensus_7314#0 ATGCTGCCCCTGCCGCTCAGCCGCCGCCCGCGGAGAGTGGGAAATCGGCAGAAGAAAACT 180 consensus_7314#1 GTACCGACCAGGCGG--CGTTCATCA--TGCCTTATCTAAGCACGTTCTACTACAACGGT 106 consensus_7314#2 ------------------------------------------------------------ consensus_7314#0 TAAACCCCGACGTGCCGGAATTCGTTCCGGCGGCGCGCAAGTAGTAAATAAGCCACCGAA 240 consensus_7314#1 GCGCCATTGATAGGAATGGATCAGCTG-AGCATTAAGGAGTGTATTAAAAAGCAAATTGA 165 consensus_7314#2 ---------------------------------------------AAATAAGCCACCGAA 15 ** **** * * consensus_7314#0 AAGTAAAGCGAACGAGAAAAAGCAGCCCAATCCACCACCTGCTGCTGCTGGTGACGGTCG 300 consensus_7314#1 ATATTACTTTAGCGAGGAAAA----TCTAAATCGTGATTT-CTACCTGCGGCGAAAAATG 220 consensus_7314#2 AAGTAAAGCGAACGAGAAAAAACAGCCCAATCCACCATCGACTGCTGCTGGCGGTGGGAA 75 * * * * **** **** * ** * * ** * ** * consensus_7314#0 GGCCGCGGCCGGCGGACGCCCACGGCCGGCTGATGGAACCGCCCGCCCGCAATGCGATGT 360 consensus_7314#1 GACC-CGGAGGGCTTCCTTCCG-GTTACGCTTATCGCATCGTTCCATCG-AGTGCAAG-- 275 consensus_7314#2 GA----AGGGTAAGGCGGCCCA---ACAGC--ATGGGAGTGGTAGCGAGGGAGGCAAGGA 126 * * ** ** ** * * * * ** * consensus_7314#0 -GGCGCTTCGGCTTCCCGAACCCGGTCAACTACAACGACAACGAGCTGTT----CTGCGG 415 consensus_7314#1 -CGCTCACCGACGATATTGACATAATCACCGAAGCAATCAAGGAATCGGAAAAGCTGGAG 334 consensus_7314#2 AGGCAAAACGGTGAAGGTGGACTAGAAGCCTGCGGAAGCAACTGCACAGC----CGGAAG 182 ** ** * *** * * * consensus_7314#0 CGGGTACGCGGTCCAGTGGGAGCAGAACCAGG-GCAACTGTGGCGTGTGCGGCGACGCGT 474 consensus_7314#1 CTGAT-CGAAGACTACAAGGTGCGCACGCGCG-TCAACCCCACGATGT--GGCCAATCG- 389 consensus_7314#2 AGGAA--TCAGCCGAACAGCAGCAACAACAGCCACAACCATAGGCCGCCTTATTGAAGGA 240 * * * * * ** * **** * * consensus_7314#0 ACCATCTGCGGGCGCCCCGGCCGCACGAGGCCGGCGGCGAG-TACGGCAAGGGCATCGTG 533 consensus_7314#1 ATCACTCG-----GTCACGATCGTGAATGGT--GCGATGAACTTCGGAGTTACTTTCGCC 442 consensus_7314#2 AGTGAATAGAAG-ATCTCGGTCGAGTCAATC------TCACCCTCAGCAAGCAC-CAGCG 292 * * ** ** * * * * consensus_7314#0 TCGCGCCGGTACGTGGCCGGCCAGGAGCTGGAGGTCGAGATCGAGGCTGACCGCAACCAT 593 consensus_7314#1 GACCAGCAGCA-GCAGCAGGACCGGACGTCGGCGTTGCCATCGCAGACGGT-GCAGGGAG 500 consensus_7314#2 CAGCAGCAGCA-GCAGCAGCTCGCAAAACAATCATCATCGCAGCAGGCGAA--------- 342 * * * * * ** * * * * * * * consensus_7314#0 ATGGGCCGGTTCGAGCTGTACCTCTGCCCGAACAACAAC--CCGCGGGCGGGAG-GGCAA 650 consensus_7314#1 AGCAACAAGCGCCAGATGCTAAACCGGCCGGGCAAGAACAGCAGCAACAGGGGGCGGCGG 560 consensus_7314#2 ------------------------------------------------------------ consensus_7314#0 CGCAGGGACTTGCTTTCCGATCGCTAACCCGGGTTCTAACTTGTTCCCGGGGACGGCGCG 710 consensus_7314#1 CGACGGCGGCGGCGGTTCCTGCGCCGACATCGGTTCCG----GTCGCTGGCGACGGAGCC 616 consensus_7314#2 ------------------------------------------------------------ consensus_7314#0 AGGTCCGGGTTCCTTCCATACCCG--GCCCGACTCGAAGAAGCAAGGACCGGTTGTTTCC 768 consensus_7314#1 GATGTCGCAGCCGTGCCGCAGCTGCAGGTGGCCTCGAAGATCC---TGTCTAGTATTCCA 673 consensus_7314#2 ------------------------------------------------------------ consensus_7314#0 CCGGGGTTAACCCCCGGGGGGTTTNGCCAAGCCTTGGACACGGCTAGT----CCTTACAC 824 consensus_7314#1 CCACCCCCGTTACCGAGAAATATTCGCAACCCAGTAAGCAAAGCGAGCAAAACCGTGC-C 732 consensus_7314#2 ------------------------------------------------------------ consensus_7314#0 GGTTTGAAAGCCTTGNG---ACACGCNCCAGATTGTG---CGCTGTTTCATTCGCAANGT 878 consensus_7314#1 GCTGCTAATACCGTGCGTGAACGTAGCGCCGATGGTGAAGCCTTGCTCCGTCAAAGAGGT 792 consensus_7314#2 ------------------------------------------------------------ consensus_7314#0 TGGGNACCCTACATTTTCACACCCGGGGGCAACAACAACTTTCTTTGNGGGACCCCCGGT 938 consensus_7314#1 AGCGCAGAAGACCAATGCTGCCCCTGCCGCT-CAGCCGCCGCCCGCGGAGAGTGGGAAAT 851 consensus_7314#2 ------------------------------------------------------------ consensus_7314#0 TGGCGAACAAAACAGGGGGAAACCANAAGATCCGGGAC 976 consensus_7314#1 CGGCAGA--AGAAAACTTAAACCCCGACGTGCCGGAA- 886 consensus_7314#2 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||