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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7316#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 742 fasta sequence
[TACGCGAGCGAGCGTGTGTGGTTGTGTGTTCAGCCGAGTAATGCTTATTTATATTCATATTATTCCATAAACAATAGTACAGAGTAGATTAGTAGAGATAGTTCCAGAAGTAGTAGTAGTAGTAGTAGTTGGTAGTTGGTAGTACACATGTGTTTTCAATACATAATCGCAACATCCATTCTATGGTA-TAACCTTAACTAGCAAAAAAAAAA--AACATACGTACCAGCGCAAAACGAAGCTCTAGCTCTCCTCTCCCGCACACACCACCATCTCAAGTCCGGCTAGCTAGTAGCGGCGCAGCTTGGACAGCGGATGTGTAATGCATATTGATTACGTGTCTTCCTACTC---CTTCCGCTTTTT-TCTCCGGTTTCAGTACGTATCCCTTTTCTTTACCGACTGTGTTTCGTCGTGCTAA-TTACGAACGTTCCACACGAAACGAAACAAAACTCCCCCCG-AAAAAAAACTGATTATAACGATCCGGGGCTTGAAGACTCTATTCCCTGCTGCTCGCTCTGTGTAGCCGTAACGGATGAATAAAACAAACGAAAAAAAAAAAGAATGAAAAGAAGCTACCTAACCAGAAGAGAACCTTTCCTTGCACCCAAGCGCACTTAAAGTTTCTGTTGCTTTTTTTCTATTAATCTGTACAAATCGCATACTGTACTTCTCTCCTGCTTCATGCCCAACTTCTGCGTTGCATTCACGGGTCCGCGGTTACTTCGATCCGCAAAAGCTACACACA]
[+] EMBL CNS09CWZ [TACGCGAGCGAGCGTGTGTGGTTGTGTGTTCAGCCGAGTAATGCTTATATATATTCATATTATTCCATAAACAATAGTACAGAGTAGATTAGTAGAGATAGTTCCAGAAGTAGTAGTAGTAGTAGTAGTTGGTAGTTGGTAGTACACATGTGTTTTCAATACATAATCGCAACATCCATTCTATGGTA TAACCTTAACTAGCAAAAA ]
[+] EMBL BM589497 [ TGTGTGTTCAGCCGAGTAATGCTTATTTATATTCAAATTATTCCATAAACAATAGTACAGAGTAGATTAGTAGAGATAGTTCCAGAAGTAGTAGTAGTAGTA GTAGTTGGTAGTACACATGTGTTTTCAATACATAATCGCAACATCCATTCTATGGTA TAACCTT ]
[-] EMBL BM641334 [ CAGCCGAGTAATGCTTATTTATATTCAAATTATTCCATAAACAATAGTACAGAGTAGATTAGTAGAGATAGTTCCAGAAGTAGTAGTAGTAGTAGTAGTTGGTAGTTGGTAGTACACATGTGTTTTCAATACATAATCGTAACATCCATTCTATGGTATTAACCTTAACTAGCAAAAAAAAAA AACATACGTACCAGCGCAAAACGAAGCTCTAGCTCTCCTCTCCCGCACACACCACCATCTCAAGTCCGGCTAGCTAGTAGCGGCGCAGCTTGGACAGCGGATGTGTAATGCATATTGATTACGTGTCTTCCTACTC CTTCCGCTTTTT TCTCCGG ]
[+] EMBL CNS0935F [ AAGGCTTATTTATATTCATATTATTCCATAAACAATAGTACAGAGTAGATTAGTAGAGATAGTTCCAGAAGTAGTAGTAGTAGTAGTAGTTGGTAGTTGGTAGTACACATGTGTTTTCAATACATAATCGCAACATCCATTCTATGGTA TAACCTTAACTAGC AAAAAAAA AACATACGTACCAGCGCAAAACGAAGCTCTAGCTCACCTCTCCCGCACACACCACCATCTCAAGTCCGGCTAGCTAGTAGCGGCGCA CTTGGACAGCGGGGGGGGAATGCATATTGATTACGTGTCTTCCTACTCCTTCTTCCGCTTTTTCTCTCC TTTCAGTACGTATCCCTTTTCTTTACCGACTGTGTTTCGTCGTGCTAA TTACGAACGTTCCACACGAAACGAAACAAAACTCCCCCCG AAAAAAAACTGATTATAACGATCCGGGGCTTGAAGACTCTATTCCCTGCTGCTCGCTCTGTGTAGCCGTAACGGATGAATAAAACAAACGAAAAAAAAAAAGAATGAAAAGAAGCTACCTAACCAGAAGAGAACCTTTCCTTGCACCCAAGCGCACTTAAAGTTTCTGTTGCTTTTTTTCTATTAATCTGTACAAATCGCATACTGTACTTCTC ]
[-] EMBL BX624458 [ TAGTAGAGATAGTTCCAGAAGTAGTAGTAGTAGTAGTAGTTGGTAGTTGGTAGTACACATGTGTTTTCAATACATAATCGCAACATCCATTCTATGGTA TAACCTTAACTAGCAAAAAAAAAAAGAACATACGTACCAGCGCAAAACGAAGCTCTAGCTCTCCTCTCCCGCACACACCACCATCTCAAGTCCGACTAGCTAGTAGCGGCGCAGCTTGGACAGCGGATGTGTAATGCATATTGATTACGTGTCTTCCTACTC CTTCCGCTTTTT TCTCTCCTTTCAGTACGTATCCCTCTTCTTTACCGACTGTGTTTCGTCGTGCTAAGCTACGAACGTTCCACACGAAACGAAACAAAACTCCCCCCGAAAAAAAAACTGATTATAACGATCCGGGGCTTGAAGACTCTATTCCCTGCTGCTCGCTCTGTGTAGCCGTAACGGATGAATAAAACAAACG AAAAAAAAAAGAATGAAAAGAAGCTACCTAACCAGAAGAGAACCTTTCNTTGCACCCAAGCGCACTTAAAGTTTCTGTTGCTTTTTTTCTATTAATCTGTACAAATCGCATACTGCNCTTCTCTCCTGCTTCATGCCCAACTTCTGCGTTGCATTCACGGGTCCGCGGTTACTTCGATCCGCAAAAGCTACACACA]
consensusID : consensus_7316#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[CCCAGTTCTAGTGGTATTAAACCGTGTAGNTAGCGTTATGTGTGAATGAGCATAGCGTAGCCAGGCGCATANTGGCGGANGCTCTTAGCNTCTCGCTNTGCCCCGCACAACAGGCAGCGCAGTGCGTGCAAGGTTCCGATCGTAGGGCTAGGTAGGCGGGCGCAGCTGTGGACAGCGGATGTGTAATGCATAGTGGANTACGTGTCTTCCTACTCGNTTCNGCGTGTGTGGTTNCGTGCGTCCGGTGTCAGTACGTATCCCTCTTCTTGTACCGACTGTGTTTCGTCGTGCTAAGCTACGAACGTTCGCACACGTAAACGAAACNNGACTCCCCGCCGANNGAGNGNAGAAGCTGATTATAACGATCCGGGGCTTGAAGACTCTATTCCCTGCTGCTCGCTCTGTGTAGCCGTAACGGATGAATAAAACAAACGAAAAAAAAAGAATGAAAAGAAGCTACACTAACCAGAAGAGAACCTTTCCTTGCACCCAAGCGCACTTAAAGTGTTCCCCTGCTTTTTGTTCTATTAATCTGTACAAATCGCATACTGTACTTCTCTCACTGCTTCATGCCCAACTTCTGCGTTGCATTCACGGGTCCGCAGGTTACTTCGATCCGCAAAAGCTACACACACCGTCGCCGTGCGGCTTTCTATTTTAACCTC]
[-] EMBL AL934582 [CCCAGTTCTAGTGGTATTAAACCGTGTAGNTAGCGTTATGTGTGAATGAGCATAGCGTAGCCAGGCGCATANTGGCGGANGCTCTTAGCNTCTCGCTNTGCCCCGCACAACAGGCAGCGCAGTGCGTGCAAGGTTCCGATCGTAGGGCTAGGTAGGCGGGCGCAGCTGTGGACAGCGGATGTGTAATGCATAGTGGANTACGTGTCTTCCTACTCGNTTCNGCGTGTGTGGTTNCGTGCGTCCGGTGTCAGTACGTATCCCTCTTCTTGTACCGACTGTGTTTCGTCGTGCTAAGCTACGAACGTTCGCACACGTAAACGAAACNNGACTCCCCGCCGANNGAGNGNAGAAGCTGATTATAACGATCCGGGGCTTGAAGACTCTATTCCCTGCTGCTCGCTCTGTGTAGCCGTAACGGATGAATAAAACAAACGAAAAAAAAAGAATGAAAAGAAGCTACACTAACCAGAAGAGAACCTTTCCTTGCACCCAAGCGCACTTAAAGTGTTCCCCTGCTTTTTGTTCTATTAATCTGTACAAATCGCATACTGTACTTCTCTCACTGCTTCATGCCCAACTTCTGCGTTGCATTCACGGGTCCGCAGGTTACTTCGATCCGCAAAAGCTACACACACCGTCGCCGTGCGGCTTTCTATTTTAACCTC]
consensusID : consensus_7316#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence
[TTTTTTTTTCTCTTTTTCTATTCCCTGCTGCTCGCTCTGTGTAGCCGTAACGGATGAATAAAACAAAACGAAAAACAAAAAGAATGAAAAGAAGCTACCTAACCAGAAGAGAACCTTTCCTTGCACCCAAGCGCACTTAAAGTTTCTGTTGCTTTTTTTCTATTAATCTGTACAAATCGCATACTGTACTTCTCTCCTGCTTCATGCCCAACTTCTGCGTTGCATTCACGGGTCCGCGGTTACTTCGATCCGCAAAAGCTACACACACCGTCGCCGTGCGGCTTTCTATTTCTCTACTCCGGACACACACTCCCACCCTCCTCTCACACCTTCTTGCCGCTGGCTGCACTATAGTTTGGGCCTTCTTCTTGTTCTCCCATTTCTCACANTCGTGCGGAATTCTTGCC]
[-] EMBL BX468018 [TTTTTTTTTCTCTTTTTCTATTCCCTGCTGCTCGCTCTGTGTAGCCGTAACGGATGAATAAAACAAAACGAAAAACAAAAAGAATGAAAAGAAGCTACCTAACCAGAAGAGAACCTTTCCTTGCACCCAAGCGCACTTAAAGTTTCTGTTGCTTTTTTTCTATTAATCTGTACAAATCGCATACTGTACTTCTCTCCTGCTTCATGCCCAACTTCTGCGTTGCATTCACGGGTCCGCGGTTACTTCGATCCGCAAAAGCTACACACACCGTCGCCGTGCGGCTTTCTATTTCTCTACTCCGGACACACACTCCCACCCTCCTCTCACACCTTCTTGCCGCTGGCTGCACTATAGTTTGGGCCTTCTTCTTGTTCTCCCATTTCTCACANTCGTGCGGAATTCTTGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7316#1 ------------------------------------------------------------
consensus_7316#2 ------------------------------------------------------------
consensus_7316#0 TACGCGAGCGAGCGTGTGTGGTTGTGTGTTCAGCCGAGTAATGCTTATTTATATTCATAT 60
consensus_7316#1 ------------------------------------------------------------
consensus_7316#2 ------------------------------------------------------------
consensus_7316#0 TATTCCATAAACAATAGTACAGAGTAGATTAGTAGAGATAGTTCCAGAAGTAGTAGTAGT 120
consensus_7316#1 -----------------CCCAGTTCTAGTGGTATTAAACCGTGTAGNTAGCGTTATGTGT 43
consensus_7316#2 ------------------------------------------------------------
consensus_7316#0 AGTAGTAGTTGGTAGTTGGTAGTACACATGTGTTTTCAATACATA-ATCGCAACATCCAT 179
consensus_7316#1 GAATGAGCATAGCGTAGCCAGGCGCATANTGGCGGANGCTCTTAGCNTCTCGCTNTGCCC 103
consensus_7316#2 ------------------------------------------------------------
consensus_7316#0 TCTATGGTATAACCTTAACTAGCAAAAAAAAA-AAACATACGTACCAGCGCAAAACGAAG 238
consensus_7316#1 CGCACAACAGGCAGCGCAGTGCGTGCAAGGTTCCGATCGTAGGGCTAGGTAGGCGGGCGC 163
consensus_7316#2 ------------------------------------------------------------
consensus_7316#0 CTCTAGCTCTCCTCTCCCGCACACACCACCATCTCAA-GTCCGGCTAGCTAGTAGCGGCG 297
consensus_7316#1 AGCTGTGGACAGCGGATGTGTAATGCATAGTGGANTACGTGTCTTCCTACTCGNTTCNGC 223
consensus_7316#2 ------------------------------------------------------------
consensus_7316#0 CAGCTTGGACAGCGGATGTGTAATGCATATTG-ATTACGTGTCTTCCTACTCCTTCCG-- 354
consensus_7316#1 GTGTGTGGTTNCGTGCGTCCGGTGTCAGTACGTATCCCTCTTCTTGTACCGACTGTGTTT 283
consensus_7316#2 ------------------------------------------------------------
consensus_7316#0 ---------CTTTTTTCTCCGGTTTCAGTACGTATCCCTTTTCTT-TACCGACTGTGTTT 404
consensus_7316#1 CGTCGTGCTAAGCTACGAACGTTCGCACACGTAAACGAAACNNGACTCCCCGCCGANNGA 343
consensus_7316#2 ------------------------------------------------------------
consensus_7316#0 CGTCGTGCTAA-TTACGAACGTTC-CACACG-AAACGAAACAAAACTCCCCCC------- 454
consensus_7316#1 GNGNAGAAGCTGATTATAACGATCCGGGGCTTGAAGACTCTATTCCCTGCTGCTCGCTCT 403
consensus_7316#2 ----------------------TTTTTTTTTCTCTTTTTCTATTCCCTGCTGCTCGCTCT 38
consensus_7316#0 GAAAAAAAACTGATTATAACGATCCGGGGCTTGAAGACTCTATTCCCTGCTGCTCGCTCT 514
* * **********************
consensus_7316#1 GTGTAGCCGTAACGGATGAATAAAACAAA-CGAAAAA--AAAAGAATGAAAAGAAGCTAC 460
consensus_7316#2 GTGTAGCCGTAACGGATGAATAAAACAAAACGAAAAACAAAAAGAATGAAAAGAAGCTAC 98
consensus_7316#0 GTGTAGCCGTAACGGATGAATAAAACAAA-CGAAAAAAAAAAAGAATGAAAAGAAGCTAC 573
***************************** ******* *********************
consensus_7316#1 ACTAACCAGAAGAGAACCTTTCCTTGCACCCAAGCGCACTTAAAGTGTTCCCCTGCTTTT 520
consensus_7316#2 -CTAACCAGAAGAGAACCTTTCCTTGCACCCAAGCGCACTTAAAGT-TTCTGTTGCTTTT 156
consensus_7316#0 -CTAACCAGAAGAGAACCTTTCCTTGCACCCAAGCGCACTTAAAGT-TTCTGTTGCTTTT 631
********************************************* *** *******
consensus_7316#1 TGTTCTATTAATCTGTACAAATCGCATACTGTACTTCTCTCACTGCTTCATGCCCAACTT 580
consensus_7316#2 T-TTCTATTAATCTGTACAAATCGCATACTGTACTTCTCTC-CTGCTTCATGCCCAACTT 214
consensus_7316#0 T-TTCTATTAATCTGTACAAATCGCATACTGTACTTCTCTC-CTGCTTCATGCCCAACTT 689
* *************************************** ******************
consensus_7316#1 CTGCGTTGCATTCACGGGTCCGCAGGTTACTTCGATCCGCAAAAGCTACACACACCGTCG 640
consensus_7316#2 CTGCGTTGCATTCACGGGTCCGC-GGTTACTTCGATCCGCAAAAGCTACACACACCGTCG 273
consensus_7316#0 CTGCGTTGCATTCACGGGTCCGC-GGTTACTTCGATCCGCAAAAGCTACACACA------ 742
*********************** ******************************
consensus_7316#1 CCGTGCGGCTTTCTATTTTA--ACCTC--------------------------------- 665
consensus_7316#2 CCGTGCGGCTTTCTATTTCTCTACTCCGGACACACACTCCCACCCTCCTCTCACACCTTC 333
consensus_7316#0 ------------------------------------------------------------
consensus_7316#1 ------------------------------------------------------------
consensus_7316#2 TTGCCGCTGGCTGCACTATAGTTTGGGCCTTCTTCTTGTTCTCCCATTTCTCACANTCGT 393
consensus_7316#0 ------------------------------------------------------------
consensus_7316#1 --------------
consensus_7316#2 GCGGAATTCTTGCC 407
consensus_7316#0 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||