These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7317#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 929 fasta sequence [GCAGATCGCCCGCAGGTTAAAAGCGATTAAAAGCGGTACAAATACACAAATTANACACCATGTCCCTTGTGGCCTACGAATACAGCAGTGATGATGGCTCAGATCAAGAGGAACCGGAAGAAACTAAACAACCAGTGGCCAGTGCACCCGTCAAACAGAATGGCACTCCGAACGTTCCATCCAGCAGCACACAAAGCGCCACACTGGCAAGATCAGGAGCCGGATGTCGATGAACTGCCGAAGCATAGCTTACACCTTCCAGANCTCCCAAGCTCCTGAACCGACACTAAGGCATACGAAGGAGGCAGGATGACGACGGTTCACTGCGTAGCACAGAAAAGGACCAATTCACCCCGGGACCAAANACAATTTCCNCCGGATACCGGACAAAGGCACGGCACGACACCCAGCCGACAAAAGCACCACAAACGGTTCCGGCAAACACCGGGCAAAAAGGGGTTCACCAAGAAATTCCNAGCACAAATNCCNCCANACTTNCGAACTTGACGACNNGAAACGCTATTCCGCAACACGCAAACAGNTCCGGCAAGGCAACCACACCAGGCAGGCAANGTGGGCCGCGAAANCAACGAAAGGGGGCAACAAAAGAGGCCCCACACTACAAACTCCCGAGCAGATGGCCCATCNGNCAGAAGCTGGCACCCACAAAACAANAGCAGACAACCAAACGCGGACAACACCAAGCGAGCACCATGGGCAATCAAAAGGACAACGTTGCACGCTGNGCGCCAGAAACGGCGACGCCCAAGGGAAAAAANGGGGNCAACCAGGGGCTACATANGGAGACCCCCNGGACCAACACCCCAGGNCAACGAGCCAGACCGGACCANAGCACAGATCCACGGGAAGAGANGCGCGTACCCNCACNCGCCCTAAAGAANGCCCACGACCCGTTGTCCAGCANCCAA] [+] EMBL AL693276 [GCAGATCGCCCGCAGGTTAAAAGCGATTAAAAGCGGTACAAATACACAAATTANACACCATGTCCCTTGTGGCCTACGAATACAGCAGTGATGATGGCTCAGATCAAGAGGAACCGGAAGAAACTAAACAACCAGTGGCCAGTGCACCCGTCAAACAGAATGGCACTCCGAACGTTCCATCCAGCAGCACACAAAGCGCCACACTGGCAAGATCAGGAGCCGGATGTCGATGAACTGCCGAAGCATAGCTTACACCTTCCAGANCTCCCAAGCTCCTGAACCGACACTAAGGCATACGAAGGAGGCAGGATGACGACGGTTCACTGCGTAGCACAGAAAAGGACCAATTCACCCCGGGACCAAANACAATTTCCNCCGGATACCGGACAAAGGCACGGCACGACACCCAGCCGACAAAAGCACCACAAACGGTTCCGGCAAACACCGGGCAAAAAGGGGTTCACCAAGAAATTCCNAGCACAAATNCCNCCANACTTNCGAACTTGACGACNNGAAACGCTATTCCGCAACACGCAAACAGNTCCGGCAAGGCAACCACACCAGGCAGGCAANGTGGGCCGCGAAANCAACGAAAGGGGGCAACAAAAGAGGCCCCACACTACAAACTCCCGAGCAGATGGCCCATCNGNCAGAAGCTGGCACCCACAAAACAANAGCAGACAACCAAACGCGGACAACACCAAGCGAGCACCATGGGCAATCAAAAGGACAACGTTGCACGCTGNGCGCCAGAAACGGCGACGCCCAAGGGAAAAAANGGGGNCAACCAGGGGCTACATANGGAGACCCCCNGGACCAACACCCCAGGNCAACGAGCCAGACCGGACCANAGCACAGATCCACGGGAAGAGANGCGCGTACCCNCACNCGCCCTAAAGAANGCCCACGACCCGTTGTCCAGCANCCAA] consensusID : consensus_7317#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 892 fasta sequence [GCAGAATCCGCACGANGTTGAAAAGCGGTAAAAATACACAAAATTACACACCATGTCCCTTGTGGCCTACGAATACAGTAGCGATGATGGCTCAGATCAAGAGGAACCCGAAGAAACTAAACAACCAGTAGCCAGTGCTTCCGCCAAACAGAACGGCACTCCGAACGTTCCGTCCAGCAGCACACAAAGCACCACACTGGAAGATCAGGAACTGGACGTCGATGAACTACCGAAACATAGCTTACACCTTCCAGCTCCCAAGCTCCTGAACGACCTAAGCATCGAGGAGGAGGATGACGAGTTCCTGCACAAGAAGGCAATCCCGGCCAACATTCCCGTACCGAAGCCGCCGCCCGCCAAGCCCAAGGTTCGCAACGGCAAGGTACAGATCACCATCCCCTCGATGAAGGACTTCGACGACGTCGAGACACGCGATGCGAAAAAGGAAAAGCCCATCATCGGTGCTGCAATGCCCAAAAAAACGACCAGCCTGCTAAGCATGCTGCCGAAGCCCAGAACGGCACTGTTTGACCCGAAACCGTCGCCCGCAGCATCCGGAAGCGCTCCAGCTAGTGCCACCTTCAGCAAGCGTCTCGTACCGGATTCCGTTGCCAATCGGCCCCGCAATGTCCCACTGAGTGCTCAAACCCAGTCACAAACAGCCGACCAACCGGCGCAAAGGCAGCCAAACCGGGAGCCGGATCATCCGGCAACACCGGACAACAGTGACGAGGAGGAAAGANGGACGAAACAAAATTGGGTTGGGAATTTCCTTTTCTTCGGTTTCAAAGCANAAGGTCGAATGAACATGGGCCCAACCCGGTCAGGCCACNNGAACGAAATTCAGGTGCGCGATTGGTGGGCGAAAAAAAGGGCCAGGGAAAATTGGGCG] [+] EMBL BX467868 [GCAGAATCCGCACGANGTTGAAAAGCGGTAAAAATACACAAAATTACACACCATGTCCCTTGTGGCCTACGAATACAGTAGCGATGATGGCTCAGATCAAGAGGAACCCGAAGAAACTAAACAACCAGTAGCCAGTGCTTCCGCCAAACAGAACGGCACTCCGAACGTTCCGTCCAGCAGCACACAAAGCACCACACTGGAAGATCAGGAACTGGACGTCGATGAACTACCGAAACATAGCTTACACCTTCCAGCTCCCAAGCTCCTGAACGACCTAAGCATCGAGGAGGAGGATGACGAGTTCCTGCACAAGAAGGCAATCCCGGCCAACATTCCCGTACCGAAGCCGCCGCCCGCCAAGCCCAAGGTTCGCAACGGCAAGGTACAGATCACCATCCCCTCGATGAAGGACTTCGACGACGTCGAGACACGCGATGCGAAAAAGGAAAAGCCCATCATCGGTGCTGCAATGCCCAAAAAAACGACCAGCCTGCTAAGCATGCTGCCGAAGCCCAGAACGGCACTGTTTGACCCGAAACCGTCGCCCGCAGCATCCGGAAGCGCTCCAGCTAGTGCCACCTTCAGCAAGCGTCTCGTACCGGATTCCGTTGCCAATCGGCCCCGCAATGTCCCACTGAGTGCTCAAACCCAGTCACAAACAGCCGACCAACCGGCGCAAAGGCAGCCAAACCGGGAGCCGGATCATCCGGCAACACCGGACAACAGTGACGAGGAGGAAAGANGGACGAAACAAAATTGGGTTGGGAATTTCCTTTTCTTCGGTTTCAAAGCANAAGGTCGAATGAACATGGGCCCAACCCGGTCAGGCCACNNGAACGAAATTCAGGTGCGCGATTGGTGGGCGAAAAAAAGGGCCAGGGAAAATTGGGCG] [+] EMBL BM626654 [ ccggcaaTTGAAAAGCGGTAAAAATACACAAAATTACACACCATGTCCCTTGTGGCCTACGAATACAGTAGCGATGATGGCTCAGATCAAGAGGAACCCGAAGAAACTAAACAACCAGTAGCCAGTGCTTCCGCCAAACAGAACGGCACTCCGAACGTTCCGTCCAGCAGCACACAAAGCACCACACTGGAAGATCAGGAACTGGACGTCGATGAACTACCGAAACATAGCTTACACCTTCCAGCTCCCAAGCTCCTGAACGACCTAAGCATCGAGGAGGAGGATGACGAGTTCCTGCACAAGAAGGCAATCCCGGCCAACATTCCCGTACCGAAGCCGCCGCCCGCCAAGCCCAAGGTTCGCAACGGCAAGGTACAGATCACCATCCCCTCGATGAAGGACTTCGACGACGTCGAGACACGCGATGCGAAAAAGGAAAAGCCCATCATCGGTGCTGCAATGCCCAAAAAAACGACCAGC ] consensusID : consensus_7317#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 702 fasta sequence [GACGTATTAACTCGCTCGGAAAAGCAATTGAAAAGCGGTAAAAATACACAAAATTACACACCATGTCCCTTGTGGCCTACGAATACAGCAGTGATGATGGTTCGGATCAAGAGGAACCGGAAGAAACTAAACAACCAGTGGCCAGTGCACCCGTCAAACAGAATGGCACTCCGAACGTTCCATCCAGCAGCACACAAAGCGCCACACTGGAAGATCAGGAGCCGGATGTCGATGAACTGCCGAAGCATAGCTTACACCTTCCAGCTCCCAAGCTCCTGAACGACCTAAGCATCGAGGAGGAGGATGACGAGTTCCTGCACAAGAAGGCCATCCCGGCCAACATTCCCGTACCGAAGCCGCCGCCCGCCAAGCCCAAGGTTCGCAACGGCAAGGTACAGATCACCATCCCCTCGATGAAGGACTTCGACGACGTCGAGACACGCGATGCGAAAAAGGAAAAGCCCATCATCGGTGCTGCAATGCCCAAAAAAACGACCAGCCTGCTAAGCATGCTGCCGAAGCCCAGAACGGCACTGTTTGACCCGAAACCGTCGCCCGCAGCATCCGGAAGCGCTCCAGCTAGTGCCACCTTCAGCAAGCGTCTCGTACCGGATTCCGTTGCCAATCGGCCCCGCAATGTCCCACTGAGTGCTCAAACCCAGCCCAACAGCCGACCAACCGGCGCAAAACAGCCAAACCCGG] [+] EMBL AL930460 [GACGTATTAACTCTCTCGGAAAAGCAATTGAAAAGCGGTAAAAATACACAAAATTACACACCATGTCCCTTGTGGCCTACGAATACAGCAGTGATGATGGTTCGGATCAAGAGGAACCGGAAGAAACTAAACAACCAGTGGCCAGTGCACCCGTCAAACAGAATGGCACTCCGAACGTTCCATCCAGCAGCNCACAAAGCGCCACACTGGAAGATCAGGAGCCGGATGTCGATGAACTGCCGAAGCATAGCTTACACCTTCCAGCTCCCAAGCTCCTGAACGACCTAAGCATCGAGGAGGAGGATGACGAGTTCCTGCAC ] [+] EMBL BM576274 [ cCGCTCGGAAAAGCGATTAAAAAGCGGTAAAAATACACAAAATTACACACCATGTCCCTTGTGGCCTACGAATACAGCAGTGATGATGGCTCAGATCAAGAGGAACCGGAAGAAACTAAACAACCAGTGGCCAGTGCACCCGTCAAACAGAATGGCACTCCGAACGTTCCATCCAGCAGCACACAAAGCGCCACACTGGAAGATCAGGAGCCGGATGTCGATGAACTGCCGAAGCATAGCTTACACCTTCCAGCTCCCAAGCTCCTGAACGACCTAAGCATCGAGGAGGAGGATGACGAGTTCCTGCACAAGAAGGCCATCCCGGCCAACATTCCCGTACCGAAGCCACCGCCCGCCAAGCCCAAGGTTCGCAACGGCAAGGTACAGATCACCATCCCCTCGATGAAGGACTTCGACGACGTCGAGACACGCGATGCGAAAAAGGAAAAGCCCATCATCGGTGCTGCAATGCCCAAAAAAACGACCAGCCTGCTAAGCATGCTGCCGAAGCCCAGAACGGCACTGTTTGACCCGAAACCGTCGCCCGCAGCATCCGGAAGCGCTCCAGCTAGTGCCACCTTCAGCAAGCGTCTCGTACCGGATTCCGTTGCCAATCGGCCCCGCAATGTCCCACTGAGTGCTCAAACCCAGCCCAACAGCCGACCAACCGGCGCAAAACAGCCAAACCCGG] [+] EMBL BM575844 [ ccgCGGAAAAGCAATTGAAAAGCGGTAAAAATACACAAAATTACACACCATGTCCCTTGTGGCCTACGAATACAGTAGCGATGATGGCTCAGATCAAGAGGAACCCGAAGAAACTAAACAACCAGTAGCCAGTGCTTCCGCCAAACAGAACGGCACTCCGAACGTTCCGTCCAGCAGCACACAAAGCACCACACTGGAAGATCAGGAACTGGACGTCGATGAACTACCGAAACATAGCTTACACCTTCCAGCTCCCAAGCTCCTGAACGACCTAAGCATCGAGGAGGAGGATGACGAGTTCCTGCACAAGAAGGCAATCCCGGCCAACATTCCCGTACCGAAGCCGCCGCCCGCCAAGCCCAAGGTTCGCAACGGCAAGGTACAGATCACCATCCCCTCGATGAAGGACTTCGACGACGTCGAGACACGCGATGCGAAAAAGGAAAAGCCCATCATCGGTGCTGCAATGCCCAAAAAAACGACCAGCCTGCTAAGCATGCTGCCGAAGCCCAGAACGGCACTGTTTGACCCGAAACCGTCGCCCGCAGCATCCGGAAGCGCTCCAGCTAGTGCCACCTTCAGCAAGCGTCTCGTACCGGATTCCGTTGCCAATCGGCCCCGCAATGTCC ] [+] EMBL BM616300 [ ccgAGCAATTGAAAAGCGGTAAAAATACACAAAATTACACACCATGTCCCTTGTGGCCTACGAATACAGCAGTGATGATGGTTCGGATCAAGAGGAACCGGAAGAAACTAAACAACCAGTGGCCAGTGCACCCGTCAAACAGAATGGCACTCCGAACGTTCCATCCAGCAGCACACAAAGCGCCACACTGGAAGATCAGGAGCCGGATGTCGATGAACTGCCGAAGCATAGCTTACACCTTCCAGCTCCCAAGCTCCTGAACGACCTAAGCATCGAGGAGGAGGATGACGAGTTCCTGCACAAGAAGGCCATCCCGGCCAACATTCCCGTACCGAAGCCGCCGCCCGCCAAGCCCAAGGTTCGCAACGGCAAGGTACAGATCACCATCCCCTCGATGAAGGACTTCGACGACGTCGAGACACGCGATGCGAAAAAGGAAAAGCCCATCATCGGTGCTGCAATGCCCAAAAAAACGACCAGCCTGCTAAGCATGCTGCCGAAGCCCAGAACGGCACTGTTTGACCCGAAACCGTCGCCCGCAGCATCCGGAAGCGCTCCAGCTAGTGCCACCTTCAGCAAGCGTCTCGTACCGGATTCCGTTGCCAATCGGCCCCGCAATGTCCCACTGAGTGCTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7317#1 ---GCAG--AATCCGCACGANG------TTGAAAAGCGGTAAAAATACACAAAATTACAC 49 consensus_7317#2 GACGTATT-AACTCGCTCGGAAAAGCAATTGAAAAGCGGTAAAAATACACAAAATTACAC 59 consensus_7317#0 ---GCAGATCGCCCGCAGGTTAAAAGCGATTAAAAGCGGTACAAATACACAAA-TTANAC 56 * * *** * * ********** *********** *** ** consensus_7317#1 ACCATGTCCCTTGTGGCCTACGAATACAGTAGCGATGATGGCTCAGATCAAGAGGAACCC 109 consensus_7317#2 ACCATGTCCCTTGTGGCCTACGAATACAGCAGTGATGATGGTTCGGATCAAGAGGAACCG 119 consensus_7317#0 ACCATGTCCCTTGTGGCCTACGAATACAGCAGTGATGATGGCTCAGATCAAGAGGAACCG 116 ***************************** ** ******** ** ************** consensus_7317#1 GAAGAAACTAAACAACCAGTAGCCAGTGCTTCCGCCAAACAGAACGGCACTCCGAACGTT 169 consensus_7317#2 GAAGAAACTAAACAACCAGTGGCCAGTGCACCCGTCAAACAGAATGGCACTCCGAACGTT 179 consensus_7317#0 GAAGAAACTAAACAACCAGTGGCCAGTGCACCCGTCAAACAGAATGGCACTCCGAACGTT 176 ******************** ******** *** ********* *************** consensus_7317#1 CCGTCCAGCAGCACACAAAGCACCACACTGG-AAGATCAGGAACTGGACGTCGATGAACT 228 consensus_7317#2 CCATCCAGCAGCACACAAAGCGCCACACTGG-AAGATCAGGAGCCGGATGTCGATGAACT 238 consensus_7317#0 CCATCCAGCAGCACACAAAGCGCCACACTGGCAAGATCAGGAGCCGGATGTCGATGAACT 236 ** ****************** ********* ********** * *** *********** consensus_7317#1 ACCGAAACATAGCTTACACCTTCCAG--CTCCCAAGCTCCTGAAC-GAC-CTAAG---CA 281 consensus_7317#2 GCCGAAGCATAGCTTACACCTTCCAG--CTCCCAAGCTCCTGAAC-GAC-CTAAG---CA 291 consensus_7317#0 GCCGAAGCATAGCTTACACCTTCCAGANCTCCCAAGCTCCTGAACCGACACTAAGGCATA 296 ***** ******************* ***************** *** ***** * consensus_7317#1 TCGAGGAGG-AGGATGACGA--GTTC-CTGCACAAGAAGGCAATCCCGGCCAA--CATTC 335 consensus_7317#2 TCGAGGAGG-AGGATGACGA--GTTC-CTGCACAAGAAGGCCATCCCGGCCAA--CATTC 345 consensus_7317#0 CGAAGGAGGCAGGATGACGACGGTTCACTGCGTAGCACAGAAAAG--GACCAATTCACCC 354 ****** ********** **** **** * * * * * **** ** * consensus_7317#1 CCGTACCGAAGCCGCCGCCCGCCAAGCCCAAGGTTCGCA-ACGGCAAGGTACAGA-TCAC 393 consensus_7317#2 CCGTACCGAAGCCGCCGCCCGCCAAGCCCAAGGTTCGCA-ACGGCAAGGTACAGA-TCAC 403 consensus_7317#0 CGGGACCAAANACAATTTCCNCCGGATACCGGACAAAGGCACGGCACGACACCCAGCCGA 414 * * *** ** * ** ** * * ****** * ** * * consensus_7317#1 CATCCCCTCGATGAAGGACTTCGACGA-CGTCGAGACACGCGATGCGAAAAAGGAAAAGC 452 consensus_7317#2 CATCCCCTCGATGAAGGACTTCGACGA-CGTCGAGACACGCGATGCGAAAAAGGAAAAGC 462 consensus_7317#0 CAAAAGCACCACAAACGGTTCCGGCAAACACCGGGCAAAAAGGGGTTCACCAAGAAATTC 474 ** * * * ** * * ** * * * ** * * * * * * **** * consensus_7317#1 CCATCATCGGTGCTGCAATGCCCAAAAAAACGACCAGCCTGCTAAGCATGCTGCCGAAGC 512 consensus_7317#2 CCATCATCGGTGCTGCAATGCCCAAAAAAACGACCAGCCTGCTAAGCATGCTGCCGAAGC 522 consensus_7317#0 CNAGCACAAATNCCNCCANACTTNCGAACTTGACGA-CNNGAAACGCTATTCCGCAACAC 533 * * ** * * * * * ** *** * * * * ** * * * consensus_7317#1 CCAGAACGGCACTGTTTGACCCGAAACCGTCGCCCGCAGCATCCGGAAGCGCTCCAGCTA 572 consensus_7317#2 CCAGAACGGCACTGTTTGACCCGAAACCGTCGCCCGCAGCATCCGGAAGCGCTCCAGCTA 582 consensus_7317#0 GCAAACAGNTCCGGCAAGGCAACCACACCAGGCAGGCAANGTGGGCCGCGAAANCAACGA 593 ** * * * * * * * * ** *** * * ** * * consensus_7317#1 GTGCCACCTTCAGCAAGCGTCTCGTAC--CGGATTCCGTTGCCAATCGGCCCCGCAATGT 630 consensus_7317#2 GTGCCACCTTCAGCAAGCGTCTCGTAC--CGGATTCCGTTGCCAATCGGCCCCGCAATGT 640 consensus_7317#0 AAGGGGGCAACAAAAGAGGCCCCACACTACAAACTCCCGAGCAGAT-GGCCCATCNGNCA 652 * * ** * * * * ** * * *** ** ** ***** * consensus_7317#1 CCCACTGAGTGCTCAAACCCAGTCACAAACAGCCGACCA--ACCGGCGCAAAGGCAGCCA 688 consensus_7317#2 CCCACTGAGTGCTCAAACCCAGCCC--AACAGCCGACCA--ACCGGCGCAAAA-CAGCCA 695 consensus_7317#0 GAAGCTGGCACCCACAAAACAANAGCAGACAACCAAACGCGGACAACACCAAGCGAGCAC 712 *** * ** ** *** ** * * * * * ** *** consensus_7317#1 AACCGGGAGCCGGAT---CATCCGGCAACACCGGACAACAGTGACGAGGAGGAAAGANGG 745 consensus_7317#2 AACCCGG----------------------------------------------------- 702 consensus_7317#0 CATGGGCAATCAAAAGGACAACGTTGCACGCTGNGCGCCAGAAACGGCGACGCCCAAGGG 772 * * consensus_7317#1 ACGAAACAAAATTGGGTTGGGAATTTCCTTT----TCTTCGGTTTCAAAGCANAAGGTCG 801 consensus_7317#2 ------------------------------------------------------------ consensus_7317#0 AAAAAANGGGGNCAACCAGGGGCTACATANGGAGACCCCCNGGACCAACACCCCAGGNC- 831 consensus_7317#1 AATGAACATGGGCCCAACCCGGTCAGGCCACNNGAACGAAATTCAGGTGCGCGATTGGTG 861 consensus_7317#2 ------------------------------------------------------------ consensus_7317#0 AACGAGC-CAGACCGGACCANAGCACAGATCCACGGGAAGAGANGCGCGTACCCNCACNC 890 consensus_7317#1 GGCGAAAAAAAGGGCCAGGGAAAATTGGGCG-------- 892 consensus_7317#2 --------------------------------------- consensus_7317#0 GCCCTAAAGAANGCCCACGACCCGTTGTCCAGCANCCAA 929 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||