These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1283 fasta sequence [CCGCTGCTGCAGAACATTCTGCTGAAGAGTTTGCTGAAAGTGGGCACCCAATACCGAACCGTTTCGTTCGAGAAAGCATTCCCCGTGTCGTTCCTGCAGCCGCTGCTCAAGATGGCACGGGCCGCCTCCATCCCGATCCGCATCATCGTGATGCAGATCTTTCAGCAGCTGCTCGATCGGCACCAGAACCAGCACCTGCTGAACGTGATCAACGTGAGCCACTATCCGACGCTGACGATCGAAACGCCGTCCCGGTCGGACATACTGTTCACGCACAAGTACGGCTCGAACATACTGCAGGCCATCATCGAGAGCATGTCGCAGGAGAACCATCTGGAGGTGTTGAAATCGTCCTACAACACGATCGCACTGGTGATCGTCGAGATGGCGTGCGGTGAAACGATGCAAGAGTTTCTGCTCTTCATATTGGGCGTACAGCAAGTGGCCGTAACCGAGGTGGAACTATCACCAAAGCATCGCTGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTCGGGCCGCTGGTCGAGTACGTCGAGAAGCTGATACAGGCACGCAAGGAGGAGGCTTCCTATCTGCTGCCCCCGCTAATGGACAACGACAAGAGTGCACCGAGCACGCTGAACACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCGGTGGCGGAATGTTTGCAGCAGGCCGGGCTGGAGTGCAACCGCGTCCAGACAGGGACACCGTACGCCCTCAACCAGACGGACATATCGGCGCACCGTCACTCGTGGGTTGACACGCACAGTGCCGTTCGGAACAGTGTGGTCGATGCGAGCTACAACGACATCGAAAGCGTCAGCAGCTCGCCGGGCGTCCAGAAGCGCTCGCTCGCCTCCGAGTACAACTTCGAGTCGATGAAGCGTGTGCTGGCCGAACCGACGGAAGCTTCCAAGCGTGAGGCGCGCGAAAAGCAGATGCAAATTGGGCGCACGTTCCGGGAGACAGCGTTCGAGGATTTGGTACGCCGGACCGAACCCCAGCACGACGTCATCCAGAACAAGCTGAATGAAATCTTTAACGCCCTGTCGGCGGAGCGACAGATTTCGGCTTCCTGCGGTGTACAGGCCGGTTCGCTGCTGCTAGCCGCCAACGGGGGACTCAACGGGCCGTCGATGATTGAGCCGGGCAAGCATCACCTGGCGGCCGGTGGCCAGCGACCAATCTACGAGAATAACTTTCCGGAATTGTTCTTCTATTAGATGGTGGTAGTTTAATAGAGAAG] [+] EMBL BM646823 [CCGCTGCTGCAGAACATTCTGCTGAAGAGTTTGCTGAAAGTGGGCACCCAATACCGAACCGTTTCGTTCGAGAAAGCATTCCCCGTGTCGTTCCTGCAGCCGCTGCTCAAGATGGCACGGGCCGCCTCCATCCCGATCCGCATCATCGTGATGCAGATCTTTCAGCAGCTGCTCGATCGGCACCAGAACCAGCACCTGCTGAACGTGATCAACGTGAGCCACTATCCGACGCTGACGATCGAAACGCCGTCCCGGTCGGACATACTGTTCACGCACAAGTACGGCTCGAACATACTGCAGGCCATCATCGAGAGCATGTCGCAGGAGAACCATCTGGAGGTGTTGAAATCGTCCTACAACACGATCGCACTGGTGATCGTCGAGATGGCGTGCGGTGAAACGATGCAAGAGTTTCTGCTGTTCATATTGGGCGTACAGCAAGTGGCCGTAACCGAGGTGGAACTATCACCAAAGCATCGCTGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTCGGGCCGCTGGTCGAGTACGTCGAGAAGCTGATACAGGCACGCAAGGAGGAGGCTTCCTATCTGCTGCCCCCGCTAATGGACAACGACAAGAGTGCACCGAGCACGCTGAACACCAACCTGCC ] [+] EMBL BX628584 [ TCGTCGAGATGGCGTGCGGCGAAACGATGCAAGAGTTTCTGCTCTTCATATTGGGCGTACAGCAAGTGGCCGTAACCGAGGTGGAACTATCACCAAAGCATCGCTGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTCGGGCCGCTGGTCGAGTACGTCGAGAAGCTGATACAGGCACGCAAGGAGGAGGCTTCCTATCTGCTGCCCCCGCTAATGGACAACGACAAAAGTGCACCGAGCACGCTGAACACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCGGTGGCGGAATGTTTGCAGCAGGCCGGGCTGGAGTGCAACCGCGTCCAGACAGGGACACCGTACGCCCTCAACCAGACGGA ] [+] EMBL BX613722 [ TTCTGCTCTTCATATTGGGCGTACAGCAAGTGGCCGTAACCTAGGTGGAACTATCGCCAAAGCATCGCTGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTCGGGCCGCTGGTCGAGTACGTCGAGAAGCTGATACAGGCACGCAAGGAGGAGGCTTCCTATCTGCTGCCCCCGCTGATGGACAACGACAAGAGTGCACCGAGCACGCTGAACACCAATCTGCCCCATCTGCTCGTGGACAAGCTGGCGGTGGCGGAATGTTTGCAGCAGGCCGGGCTGGAGTGCAACCGCGTCCAGACAGGGACACCGTACGCCCTCAACCAGACGGACATATCGGCCCACCGTCACTCGTGGGTTGACACGCACAGTGCCGTTCGAAACAGTGTGGTCGATGCGAGCTACAACTACATCGAAAGCGTCAGCAGCTCGCCGGGCGTCCAGAAGCGCTCGCTCGCCTCCGAGTACAACTTCGAGTCGATGAAGCGCGTGCTAGCCGAACCGACGGAAGCTTCGAAGCGTGAGGCGCGCGAAAAGCAGATGCAAATTGGGCGCACGTTCCGGGAGACGGCATTCGAGGATTTGGTACGCCGGACCGAACCCCAG ] [+] EMBL BX620508 [ GGCGTACAGCAAGTGGCCGTAACCGAGGTGGAACTATCACCAAAGCATCGCTGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTCGGGCCGCTGGTCGAGTACGTCGAGAAGCTGATACAGGCACGCAAGGAGGAGGCTTCCTATCTGCTGCCCCCGCTAATGGACAACGACAAGAGTGCACCGAGCACGCTGAACACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCGGTGGCGGAATGTTTGCAGCAGGCCGGGCTGGAGTGCAACCGCGTCCAGACAGGGACACCGTACGCCCTCAACCAGACGGACATATCGGCGCACCGTCACTCGTGGGTTGACACGCACAGTGCCGTTCGGAACAGTGTGGTCGATGCGAGCTACAACGACATCGAAAGCGTCAGCAGCTCGCCGGGCGTCCAGAAGCGCTCGCTCGCCTCCGAGTACAACTTCGAGTCGATGAAGCGTGTGCTGGCCGAACCGACGGAAGCTTCCAAGCGTGAGGCGCGCGAAAAGCAGATGCAAATTGGGCGCACGTTCCGGGAGACAGCGTTCGAGGATTTGGTA ] [+] EMBL BM614762 [ ccgCTATCTGCTGCCCCCGCTAATGGACAACGACAAGAGTGCACCGAGCACGCTGAACACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCGGTGGCGGAATGTTTGCAGCAGGCCGGGCTGGAGTGCAACCGCGTCCAGACAGGGACACCGTACGCCCTCAACCAGACGGACATATCGGCGCACCGTCACTCGTGGGTTGACACGCACAGTGCCGTTCGGAACAGTGTGGTCGATGCGAGCTACAACGACATCGAAAGCGTCAGCAGCTCGCCGGGCGTCCAGAAGCGCTCGCTCGCCTCCGAGTACAACTTCGAGTCGATGAAGCGTGTGCTGGCCGAACCGACGGAAGCTTCCAAGCGTGAGGCGCGCGAAAAGCAGATGCAAATTGGGCGCACGTTCCGGGAGACAGCGTTCGAGGATTTGGTACGCCGGACCGAACCCAAGCACGACGTCATCCAGAACAAGCTGAATGAAATCTTTAACGCCCTGTCGGCGGAGCGACAGATTTCGGCTTCCTGCGGTGTACAGGCCGGTTCGCTGCTGCTAGCCGCCAACGGGGGACTCAACGGGCCGTCGATGATTGAGCCGGGCAAGCATCACCTGGCGGCCGGTGGCCAGCGACCAATCTACGAGAATAACTTTCCGGAATTGTTCTTCTATTAGATGGTGGTAGTTTAATAGAGAAG] consensusID : consensus_7320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence [CCGAGGTTATATTGGGCGTACAGCAAGTGGCCGTAACGAGGTNGAACTATCACCAAAGCATCGCTGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTCGGGCCGCTGTGTCGAGTACGTCGAGAAGCTGATTACAGGCACGCAAGGAGGATGGCTTCCTATCTGCTGCCCCCGACTAATGGACAACGTACCATGAGTGCACCGATGCATGGCTGAAGCACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCGAGTGGCGGACATGTTTAGCATGCAGGCCGGGCTAGTGGATGTGCAACCGCGTCCAGAGCAGNNGACACCGTATCGCCCTCAACCANCACCGTGACACTATCGGCGCACCGTACACTCGTGCGGCTTGCAGCACGGCACATGNNGCTCGATCTCGGCAACAGTTGTGGATCGATGCGAGCTTACAACAGTACACTCGAAAGCGTACAGTCAGCATCGCCGGGCGTCCAGAAGGCGCTCGCNTCGCCTCCGGAGTACACATCTCTCGAGATCNATGAAGGCGCTGTGCTGGCCGAACCGACGGAA] [+] EMBL AL930957 [CCGAGGTTATATTGGGCGTACAGCAAGTGGCCGTAACGAGGTNGAACTATCACCAAAGCATCGCTGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTCGGGCCGCTGTGTCGAGTACGTCGAGAAGCTGATTACAGGCACGCAAGGAGGATGGCTTCCTATCTGCTGCCCCCGACTAATGGACAACGTACCATGAGTGCACCGATGCATGGCTGAAGCACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCGAGTGGCGGACATGTTTAGCATGCAGGCCGGGCTAGTGGATGTGCAACCGCGTCCAGAGCAGNNGACACCGTATCGCCCTCAACCANCACCGTGACACTATCGGCGCACCGTACACTCGTGCGGCTTGCAGCACGGCACATGNNGCTCGATCTCGGCAACAGTTGTGGATCGATGCGAGCTTACAACAGTACACTCGAAAGCGTACAGTCAGCATCGCCGGGCGTCCAGAAGGCGCTCGCNTCGCCTCCGGAGTACACATCTCTCGAGATCNATGAAGGCGCTGTGCTGGCCGAACCGACGGAA] consensusID : consensus_7320#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence [CCGCCCACGCGTCCGATCTGGAGGTGTTGAAATCGTCCTACAACACGATCGCACTGGTGATCGTCGAGATGGCGTGCGGTGAAACGATGCAAGAGTTTCTGCTGTTCATATTGGGCGTACAGCAAGTGGCCGTAACCGAGGTGGAACTATCACCAAAGCATCGCTGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTCGGGCCGCTGGTCGAGTACGTCGAGAAGCTGATACAGGCACGCAAGGAGGAGGCTTCCTATCTGCTGCCCCCGCTAATGGACAACGACAAGAGTGCACCGAGCACGCTGAACACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCGGTGGCGGAATGTTTGCAGCAGGCCGGGCTGGAGTGCAACCGCGTCCAGACAGGGACACCGTACGCCCTCAACCAGACGGACATATCGGCGCACCGTCACTCGTGGGTTGACACGCACAGTGCCGTTCGGAACAGTGTGGTCGATGCGAGCTACAACGACATCGAAAG] [+] EMBL BM631406 [CCGCCCACGCGTCCGATCTGGAGGTGTTGAAATCGTCCTACAACACGATCGCACTGGTGATCGTCGAGATGGCGTGCGGTGAAACGATGCAAGAGTTTCTGCTGTTCATATTGGGCGTACAGCAAGTGGCCGTAACCGAGGTGGAACTATCACCAAAGCATCGCTGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTCGGGCCGCTGGTCGAGTACGTCGAGAAGCTGATACAGGCACGCAAGGAGGAGGCTTCCTATCTGCTGCCCCCGCTAATGGACAACGACAAGAGTGCACCGAGCACGCTGAACACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCGGTGGCGGAATGTTTGCAGCAGGCCGGGCTGGAGTGCAACCGCGTCCAGACAGGGACACCGTACGCCCTCAACCAGACGGACATATCGGCGCACCGTCACTCGTGGGTTGACACGCACAGTGCCGTTCGGAACAGTGTGGTCGATGCGAGCTACAACGACATCGAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7320#0 CCGCTGCTGCAGAACATTCTGCTGAAGAGTTTGCTGAAAGTGGGCACCCAATACCGAACC 60 consensus_7320#2 ------------------------------------------------------------ consensus_7320#1 ------------------------------------------------------------ consensus_7320#0 GTTTCGTTCGAGAAAGCATTCCCCGTGTCGTTCCTGCAGCCGCTGCTCAAGATGGCACGG 120 consensus_7320#2 ------------------------------------------------------------ consensus_7320#1 ------------------------------------------------------------ consensus_7320#0 GCCGCCTCCATCCCGATCCGCATCATCGTGATGCAGATCTTTCAGCAGCTGCTCGATCGG 180 consensus_7320#2 ------------------------------------------------------------ consensus_7320#1 ------------------------------------------------------------ consensus_7320#0 CACCAGAACCAGCACCTGCTGAACGTGATCAACGTGAGCCACTATCCGACGCTGACGATC 240 consensus_7320#2 ------------------------------------------------------------ consensus_7320#1 ------------------------------------------------------------ consensus_7320#0 GAAACGCCGTCCCGGTCGGACATACTGTTCACGCACAAGTACGGCTCGAACATACTGCAG 300 consensus_7320#2 ------------------------------------------------------------ consensus_7320#1 ------------------------------------------------------------ consensus_7320#0 GCCATCATCGAGAGCATGTCGCAGGAGAACCATCTGGAGGTGTTGAAATCGTCCTACAAC 360 consensus_7320#2 ----------------CCGCCCACGCGTCCGATCTGGAGGTGTTGAAATCGTCCTACAAC 44 consensus_7320#1 ------------------------------------------------------------ consensus_7320#0 ACGATCGCACTGGTGATCGTCGAGATGGCGTGCGGTGAAACGATGCAAGAGTTTCTGCTC 420 consensus_7320#2 ACGATCGCACTGGTGATCGTCGAGATGGCGTGCGGTGAAACGATGCAAGAGTTTCTGCTG 104 consensus_7320#1 ------------------------------------------------------CCGAGG 6 * * consensus_7320#0 TTCATATTGGGCGTACAGCAAGTGGCCGTAACCGAGGTGGAACTATCACCAAAGCATCGC 480 consensus_7320#2 TTCATATTGGGCGTACAGCAAGTGGCCGTAACCGAGGTGGAACTATCACCAAAGCATCGC 164 consensus_7320#1 TT-ATATTGGGCGTACAGCAAGTGGCCGTAAC-GAGGTNGAACTATCACCAAAGCATCGC 64 ** ***************************** ***** ********************* consensus_7320#0 TGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTC 540 consensus_7320#2 TGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTC 224 consensus_7320#1 TGCAATCTGCACAGCATTGCCATTTCGCTGCTGATCCTGCTCGGACGCTGTACCGGTGTC 124 ************************************************************ consensus_7320#0 GGGCCGCTG-GTCGAGTACGTCGAGAAGCTGAT-ACAGGCACGCAAGGAGGA-GGCTTCC 597 consensus_7320#2 GGGCCGCTG-GTCGAGTACGTCGAGAAGCTGAT-ACAGGCACGCAAGGAGGA-GGCTTCC 281 consensus_7320#1 GGGCCGCTGTGTCGAGTACGTCGAGAAGCTGATTACAGGCACGCAAGGAGGATGGCTTCC 184 ********* *********************** ****************** ******* consensus_7320#0 TATCTGCTGCCCCCG-CTAATGGACAACGA--CAAGAGTGCACCGA-GCACG-CTGAA-C 651 consensus_7320#2 TATCTGCTGCCCCCG-CTAATGGACAACGA--CAAGAGTGCACCGA-GCACG-CTGAA-C 335 consensus_7320#1 TATCTGCTGCCCCCGACTAATGGACAACGTACCATGAGTGCACCGATGCATGGCTGAAGC 244 *************** ************* ** *********** *** * ***** * consensus_7320#0 ACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCG-GTGGCGGA-ATGTTT-GCA-GCA 707 consensus_7320#2 ACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCG-GTGGCGGA-ATGTTT-GCA-GCA 391 consensus_7320#1 ACCAACCTGCCCCATCTGCTCGTGGACAAGCTGGCGAGTGGCGGACATGTTTAGCATGCA 304 ************************************ ******** ****** *** *** consensus_7320#0 GGCCGGGCTGGAG----TGCAACCGCGTCCAGAC--AGGGACACCGTA-CGCCCTCAACC 760 consensus_7320#2 GGCCGGGCTGGAG----TGCAACCGCGTCCAGAC--AGGGACACCGTA-CGCCCTCAACC 444 consensus_7320#1 GGCCGGGCTAGTGGATGTGCAACCGCGTCCAGAGCAGNNGACACCGTATCGCCCTCAACC 364 ********* * * **************** ********* *********** consensus_7320#0 AG-ACGG--ACA-TATCGGCGCACCGT-CACTCGTG-GGTTGACACGCACAG----TGCC 810 consensus_7320#2 AG-ACGG--ACA-TATCGGCGCACCGT-CACTCGTG-GGTTGACACGCACAG----TGCC 494 consensus_7320#1 ANCACCGTGACACTATCGGCGCACCGTACACTCGTGCGGCTTGCA-GCACGGCACATGNN 423 * ** * *** ************** ******** ** * ** **** * ** consensus_7320#0 GTTCGG-------AACAGT-GTGG-TCGATGCGAGCT-ACAACGACA---TCGAAAGCGT 857 consensus_7320#2 GTTCGG-------AACAGT-GTGG-TCGATGCGAGCT-ACAACGACA---TCGAAAG--- 538 consensus_7320#1 GCTCGATCTCGGCAACAGTTGTGGATCGATGCGAGCTTACAACAGTACACTCGAAAGCGT 483 * *** ****** **** ************ ***** * ******* consensus_7320#0 CAGCAGCTCGCCGGGCGTCCAGAAGCGCTCGCTCGCCTCCGAGTACAACTTCGAGTCGAT 917 consensus_7320#2 ------------------------------------------------------------ consensus_7320#1 ACAGTCAGCATCGCCGGGCGTCCAGAAGGCGCTCGCNTCGCCTCCGGAGTACACATCTCT 543 consensus_7320#0 GAAGCGTGTGCTGGCCGAACCGACGGAAGCTTCCAAGCGTGAGGCGCGCGAAAAGCAGAT 977 consensus_7320#2 ------------------------------------------------------------ consensus_7320#1 CGAGATCNATGAAGGCGCTGTGCTGGCCGAACCGACGGAA-------------------- 583 consensus_7320#0 GCAAATTGGGCGCACGTTCCGGGAGACAGCGTTCGAGGATTTGGTACGCCGGACCGAACC 1037 consensus_7320#2 ------------------------------------------------------------ consensus_7320#1 ------------------------------------------------------------ consensus_7320#0 CCAGCACGACGTCATCCAGAACAAGCTGAATGAAATCTTTAACGCCCTGTCGGCGGAGCG 1097 consensus_7320#2 ------------------------------------------------------------ consensus_7320#1 ------------------------------------------------------------ consensus_7320#0 ACAGATTTCGGCTTCCTGCGGTGTACAGGCCGGTTCGCTGCTGCTAGCCGCCAACGGGGG 1157 consensus_7320#2 ------------------------------------------------------------ consensus_7320#1 ------------------------------------------------------------ consensus_7320#0 ACTCAACGGGCCGTCGATGATTGAGCCGGGCAAGCATCACCTGGCGGCCGGTGGCCAGCG 1217 consensus_7320#2 ------------------------------------------------------------ consensus_7320#1 ------------------------------------------------------------ consensus_7320#0 ACCAATCTACGAGAATAACTTTCCGGAATTGTTCTTCTATTAGATGGTGGTAGTTTAATA 1277 consensus_7320#2 ------------------------------------------------------------ consensus_7320#1 ------------------------------------------------------------ consensus_7320#0 GAGAAG 1283 consensus_7320#2 ------ consensus_7320#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||