These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7329#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1573 fasta sequence [AAACCGGCCGTCGATGTCGTCTTCATCCATGGACTTTTGGGGGGTGTATTTGTGACGTGGCGCCAGAAGGATCTCAAACCGCAAGCTGCCAGTCTGCTAGAGGGCATTACCGCGTACAAGGATGAGCTGCTAACGTTCCAGGAATCGACCAACAGTGGACCCCGGGACGCATCGATCAGTGATACCGAAACGAAAGAGCTAATTGAAGCACTGCAACAGGAGGAACCGCTCGGTGCCGACTGGACCGTCGTCTACCCGGACGTCCCCCTAGCAGCGGACGAGGATGCGCACACCGGCAAGCCCACCGCCACCGCAGACGGTGCCACCTGCAGCGTGTCGGGCGACCAGTGGCTACAGGAACCGCTCGACTCGACGCAGCGATCGTTCTGCTGGCCGATGGAATGGCTCCCAAAAGACTTCCCCAGCATACGCGTGCTCGGCCTGGACTACGAGTCCTCCCTGTCGCAGTGGTCGGCGACCGGCTGCCCGTGCGAGAAGTACGACGGCAAGCTGCAGAAGCGAGCGGCCGAATTCCTCGAAAAGCTGGCCACCTCGGACGTCGGGCAGGATCGGCCCATCATCTGGGTCGGCCACTCCATGGGCGGGCTGCTGATCAAGAGCATCATGGTGCAGGCGCTCGAGAGTCCCAACCCCAAAGTGCGCCGGTTGGCGGAAAACTCGCGCGTCGTCATGTTCCTCGGTACGCCCCACCGCGGCAGTGGTGTGGCGAAACTGAAGCAGCACACATCCGCCCTCGTGTGGCCCTCGGTCGAGGTGCAGGAGCTGGAGGAAAACTCCACCCATCTGCTGCATCTAAACAAAAGCTTCCTCCGCTCGGTCGACTCGCTGGGAGTGCGCCGGCCAAAGATCATTACCCTCTGCGAGGGCAAGCCAACCATGCTGACGTCGTTCAAGCTGGCCATACACGTGGTGCCGGAAAGTTCCGCCCGGATCGATGCGGGCGATTTCTACCTCACCAGCGAGGACCATCTCAATCTCAGCAAACCGATCTGCCGGCAGTCATTCCTGTACCAGCGGCTAGTCGGTGCCATCCAGGAGGCGATCCGGTCCGGCGGCCCGGACAGTGTTAAGCTGGCCAACGTGGCGCAGGTAATGCCGAAAGCCGCCCAGCAGCAGCTCATTTTCCACGGCACCAAGAAGAGCGCCGGCAGCACAGCAGCATCGTCCGCCCTGTCCGGGCTTTACACGCAGCTCAAGCAGTTCGAGCAGCTGATGAATGTGTTTATCTAAATCCAGACATGGCACAAACACACACACACACGCACCAGTTACCTCCACGCACCTCAGCCAAAGCTTGGACAACGAGACAACATCGCATTTCGACTTTCGATGTAAGAATGTGATGAACTTAGGGTTAGGATCGTGTTGATTTAAGGTTGCTCTCCCGTGTTTGGTTGGTCGTTTTTGCCTCGCAACACACAGAGCAACACCGCACACCACAGGGTTTAGTTTTGTAGTTATTTA-TTTTTTTGTTACACATAGGG--TTTTTTTTAATTTGCAACTGGTGTTACCCCCCTCCCTCGCTTGCGAAGAAGCATTACGAATTTGACGG] [+] EMBL AGA281581 [AAACCGGCCGTCGATGTCGTCTTCATCCATGGACTTTTGGGGGGTGTATTTGTGACGTGGCGCCAGAAGGATCTCAAACCGCAAGCTGCCAGTCTGCTAGAGGGCATTACCGCGTACAAGGATGAGCTGCTAACGTTCCAGGAATCGACCAACAGTGGACCCCGGGACGCATCGATCAGTGATACCGAAACGAAAGAGCTAATTGAAGCACTGCAACAGGAGGAACCGCTCGGTGCCGACTGGACCGTCGTCTACCCGGACGTCCCCCTAGCAGCGGACGAGGATGCGCACACCGGCAAGCCCACCGCCACCGCAGACGGTGCCACCTGCAGCGTGTCGGGCGACCAGTGGCTACAGGAACCGCTCGACTCGACGCAGCGATCGTTCTGCTGGCCGATGGAATGGCTCCCAAAAGACTTCCCCAGCATACGCGTGCTCGGCCTGGACTACGAGTCCTCCCTGTCGCAGTGGTCGGCGACCGGCTGCCCGTGCGAGAAGTACGACGGCAAGCTGCAGAAGCGAGCGGCCGAATTCCTCGAAAAGCTGGCCACCTCGGACGTCGGGCAGGATCGGCCCATCATCTGGGTCGGCCACTCCATGGGCGGGCTGCTGATCAAGAGCATCATGGTGCAGGCGCTCGAGAGTCCCAACCCCAAAGTGCGCCGGTTGGCGGAAAACTCGCGCGTCGTCATGTTCCTCGGTACGCCCCACCGCGGCAGTGGTGTGGCGAAACTGAAGCAGCACACATCCGCCCTCGTGTGGCCCTCGGTCGAGGTGCAGGAGCTGGAGGAAAACTCCACCCATCTGCTGCATCTAAACAAAAGCTTCCTCCGCTCGGTCGACTCGCTGGGAGTGCGCCGGCCAAAGAT ] [+] EMBL BX619011 [ AACAAAAGCTTCCTCCGCTCGGTCGACTCGCTGGGAGTGCGCCGGCCAAAGATCATTACCCTCTGCGAGGGCAAGCCAACCATGCTGACGTCGTTCAAGCTGGCCATACACGTGGTGCCGGAAAGTTCCGCCCGGATCGATGCGGGCGATTTCTACCTCACCAGCGAGGACCATCTCAATCTCATCAAACCGATg ] [+] EMBL BX617508 [ CTTCCTCCGCTCGGTCGACTCGCTGGGAGTGCGCCGGCCAAAGATCATTACCCTCTGCGAGGGCAAGCCAACCGTGCTGACGTCGTTCAAGCTGGCCATACACGTGGTGCCGGAAAGTTCCGCCCGGATCGATGCGGGCGATTTCTACCTCACCAGCGAGGACCATCTCAATCTCAGCAAACCGATCTGCCGGCAGTCATTCCTGTACCAGCGGCTAGTCGGTGCCATCCAGGAGGCGATCCGGTCCGGCGGCCCGGACAGTGTTAAGCTGGCCAACGTGGCGCAGGTAATGCCGAAAGCCGCCCAGCAGCAGCTCATTTTCCACGGCACCAAGAAGAGCGCCGGCAGCACAGCAGCATCGTCCGCCCTGTCCGGGCTTTACACGCAGCTCAAGCAGTTCGAGCAGCTGATGAATGTGTTTATCTAAATCCAGACATGGCACAAACACACACACACACGCACCAGTTACCTCCACGCACCTCAGCCAAAGCTTGGACAACGAGACAACATCGCATTTCGACTTTCGATGTAAGAATGTGATGAACTTAGGGTTAGGATCGTGTTGATTTAAGGGTGCTCTCCCGTGTTTGGGTGGTCGT ] [+] EMBL BM656107 [ ccgCGTCGTTCAAGCTGGCCATACACGTGGTGCCGGAAAGTTCGGCCCGGATCGATGCCGGCGATTTCTACCTCACCAGCGAGGACCATCTCAATCTCAGCAAACCGATCTGCCGGCAGTCATTCCTGTACCAGCGGCTAGTCGGTGCCATCCAGGAGGCGATCCGGTCCGGCGGCCCGGACAGTGTTAAGCTGGCCAACGTGGCGCAGGTAATGCCGAAAGCCGCCCAGCAGCAGCTCATTTTCCACGGCACCAAGAAGAGCGCCGGCAGCACAGCAGCATCGTCCGCCCTGTCCGGGCTTTACACGCAGCTCAAGCAGTTCGAGCAGCTGATGAATGTGTTTATTTAAATCCAGACATGGCACAAACACACACA CACCAGTTACCTCCACGCACCTCAGCCAAAGCTTGGACAACGAGACAACATCGCATTTCGACTTTCGATGTAAGAATGTGATGAACTTAGAGTTAGGATCTTGTT ATTTAAGGTTGCTCTCCCGTGTTTGGTTGGTCGTTTTTGCCTCGCAACACACAGAGCAACACCGCACACCACAGGGTTTAGTTTTGTAGTTATTTA TTTTTTTGTTACACATAGGGTTTTTTTTTTAATTTGCAACTGGTGTTACCCCCCTCCCTCGCTTGCGAAGAAGCATTACGAATTTGACGG] [+] EMBL BX618595 [ CAGCGAGGACCATCTCAATCTCAGCAAACCGATCTGCCGGCAGTCATTCCGGTACCAGCGGCTAGTCGGTGCCATCCAGGAGGCGATCCGGTCCGGCGGCCCGGACAGTGTTAAGCTGGCCAACGTGGCGCAGGTAATGCCGAAAGCCGCCCAGCAGCAGCTCATTTTCCACGGCACCAAGAAGAGCGCCGGCAGCACAGCAGCATCGTCCGCCCTGTCCGGGCTTTACACGCAGCTCAAGCAGTTCGAGCAGCTGATGAATGTGTTTATCTAAATCCAGACATGGCACAAACACACACACACACGCACCAGTTACCTCCACGCACCTCAGCCAAAGCTTGGA ] [-] EMBL AGA283174 [ ATGAATGTGTTTATCTAAATCCAGACATGGCACAAACACACACACACACGCACCAGTTACCTCCACGCACCTCAGCCAAAGCTTGGACAACGAGACAACATCGCATTTCGACTTTCGATGTAAGAATGTGATGAACTTAGGGTTAGGATCGTGTTGATTTAAGGTTGCTCTCCCGTGTTTGGTTGGTCGTTTTTGCCTCGCAACACACAGAGCAACACCGCACACCGCAGGGTTTAGTTTTGTAGTTATTTATTTTTTTTGTTACACATAGGG TTTTTTTTAATTTGCAACTGTTGTTACCCCCCTCCCTNGCTTGCGAAGAAGCATTAC ] consensusID : consensus_7329#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCTCTATATTCTTTTTTCCCTCTCCAGGGGGTGTATTTGTGACGTGGCGCCAGAAGGATCTCAAACCGCAAGCTGCCAGTCTGCTAGGTAAGAAACACAAAGACGTTCATTTAGTGTCTACATCGTCGCCTTCCTTCACCTCGCTCACCAACGACATTGCACCGACGGACGTCGACATACCGCCGAACGGGACAGGACAGCGAACCGAGGTCGCTTACGCTGCTCGCACGTACAAAAGCTGGTCCGCTAGAAAGTCGTCCTTCGAGGAGGAGGACCACGCCCGGACAGCTGAAGGTAAGCGTAAGCGAAACGTGCTACGCTTTTCCGTTGTTTTTACACTTGCGCCCTTTTCACCTCCCCTTTCGGTCGCTCATGTCACTGCCACACCACACCTCATCTCCTGTCCCCGGTACGCAGGGGGAATCGGATGAGATAAAACATACAAACAAGTTGTAGAAATTCTTCATCCTGCGCGCTACGTTGACGATCGTGCTCACTCAGTTTCAATGTTGCAAAACATTACGATGTGCTCTAATTGCAATTTCTCTTTCCTTCCATTTCCAGAGGGCATTACCGCGTACAAGGATGAGCTGCTAACGTTCCAGGAATCGACCAACAGTGGACCCCGGGACGCATCGATCAGT] [+] EMBL BM597726 [CCGCCCACGCGTCCGCCCACGCGTCCGCTCTATATTCTTTTTTCCCTCTCCAGGGGGTGTATTTGTGACGTGGCGCCAGAAGGATCTCAAACCGCAAGCTGCCAGTCTGCTAGGTAAGAAACACAAAGACGTTCATTTAGTGTCTACATCGTCGCCTTCCTTCACCTCGCTCACCAACGACATTGCACCGACGGACGTCGACATACCGCCGAACGGGACAGGACAGCGAACCGAGGTCGCTTACGCTGCTCGCACGTACAAAAGCTGGTCCGCTAGAAAGTCGTCCTTCGAGGAGGAGGACCACGCCCGGACAGCTGAAGGTAAGCGTAAGCGAAACGTGCTACGCTTTTCCGTTGTTTTTACACTTGCGCCCTTTTCACCTCCCCTTTCGGTCGCTCATGTCACTGCCACACCACACCTCATCTCCTGTCCCCGGTACGCAGGGGGAATCGGATGAGATAAAACATACAAACAAGTTGTAGAAATTCTTCATCCTGCGCGCTACGTTGACGATCGTGCTCACTCAGTTTCAATGTTGCAAAACATTACGATGTGCTCTAATTGCAATTTCTCTTTCCTTCCATTTCCAGAGGGCATTACCGCGTACAAGGATGAGCTGCTAACGTTCCAGGAATCGACCAACAGTGGACCCCGGGACGCATCGATCAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7329#0 -------------AAACCGGCCGTCGATGTCGTCTTCATCCATGGACTTTTGGGGGGTGT 47 consensus_7329#1 CCGCCCACGCGTCCGCCCACGCGTCCGCTCTATATTCTTTTTTCCCTCTCCAGGGGGTGT 60 ** **** * *** * * * ******** consensus_7329#0 ATTTGTGACGTGGCGCCAGAAGGATCTCAAACCGCAAGCTGCCAGTCTGCTAGAGGGCAT 107 consensus_7329#1 ATTTGTGACGTGGCGCCAGAAGGATCTCAAACCGCAAGCTGCCAGTCTGCTAGG------ 114 ***************************************************** consensus_7329#0 TACCGCGTACAAGGATGAGCTGCTAACGTTCCAGGAATCGACCAACAGTGGACCCCGGGA 167 consensus_7329#1 TAAGAAACACAAAGACGTTCATTTAGTGTCTACATCGTCGCCT---------TCCTTCAC 165 ** **** ** * * ** ** *** * ** consensus_7329#0 CGCATCGATCAGTGATACCGAAACGAAAGAGCTAATTGAAGCACTGCAACAGGAGGAACC 227 consensus_7329#1 CTCGCTCACCAACGACATTGCACCGACGGAC---GTCGACATACCGC--CGAACGGGACA 220 * * * ** ** * * * *** ** * ** ** ** * ** ** consensus_7329#0 GCTCGGTGCCGACTGGACCGTCGTCTACCCGGACGTCCCCCTAGCAGCGGACGAGGATGC 287 consensus_7329#1 GGACAGCG--AACCGAG--GTCGCTTACGCTG--------CTCGCA-CGTACAAAAGCTG 267 * * * * ** * **** *** * * ** *** ** ** * consensus_7329#0 GCACACCGGCAAGCCCACCGCCACCGCAGACGGTGCCACCTGCAGCGTGTCGGGCGACCA 347 consensus_7329#1 GTCCGCTAGAAAGTCGTCCTTCGAGGAGGAGGACCACGCCCGGACAGCTGAAGGTAAGCG 327 * * * * *** * ** * * ** * * ** * * * ** * * consensus_7329#0 GTGGCTACAGGAACCGCTCGACTCGACGCAGCGATCGTTCTGCTGGCCGATGGAATGGCT 407 consensus_7329#1 -----TAAGCGAAACGTGCTACGCTTTTCCGTTGTTTTTACACTTGC---------GCCC 373 ** *** ** * ** * * * * ** ** ** * * consensus_7329#0 CCCAAAAGACTTCCCCAGCATACGCGTGCTCGGCCTGGACTACGAGTCCTC-CCTGTCGC 466 consensus_7329#1 TTTTCACCTCCCCTTTCGGTCGCTCATGTCACTGCCACACCACACCTCATCTCCTGTCCC 433 * * * * * * ** * ** ** ** ** ****** * consensus_7329#0 AGTGGTCGGCGACCGGCTGCCCGTGCGA-GAAGTACGACGGCAAGCTGCAGAAGCGAGCG 525 consensus_7329#1 --CGGTACGCAGGGGGAATCGGATGAGATAAAACATACAAACAAGTTGTAGAA------- 484 *** ** ** * ** ** ** * **** ** **** consensus_7329#0 GCCGAATTCCTCGAAAAGCTGGCCACCTCGGACGTCGGGCAGGATCGGCCCATCATCTGG 585 consensus_7329#1 -----ATTCTTCATCCTGCGCGCTACGTTGACGATCGTGCTCACTCAGTT--TCAATGTT 537 **** ** ** ** ** * * *** ** ** * *** consensus_7329#0 GTCGGCCACTCCATGGGCGGGCTGCTGATCAAGAGCATCATGGTGCAGGCGCTCGAGAGT 645 consensus_7329#1 GCAAAACATTAC---GATGTGCT-CTAAT--------------TGCAATTTCTCTTTCCT 579 * ** * * * * *** ** ** **** *** * consensus_7329#0 CCCAACCCCAAAGTGCGCCGGTTGGCGGAAAACTCGCGCGTCGTCATGTTCCTCGGTACG 705 consensus_7329#1 TCCATTTCCAGAGGGCATTACCGCGTACAAGGATGAGCTGCTA--ACGTTCCAGGAATCG 637 *** *** ** ** * ** * * * ***** * ** consensus_7329#0 CCCCACCGCGGCAGTGGTGTGGCGAAACTGAAGCAGCACACATCCGCCCTCGTGTGGCCC 765 consensus_7329#1 ACCAACAGTGG--ACCCCGGGACGCATC--GATCAGT----------------------- 670 ** ** * ** * * ** * * * *** consensus_7329#0 TCGGTCGAGGTGCAGGAGCTGGAGGAAAACTCCACCCATCTGCTGCATCTAAACAAAAGC 825 consensus_7329#1 ------------------------------------------------------------ consensus_7329#0 TTCCTCCGCTCGGTCGACTCGCTGGGAGTGCGCCGGCCAAAGATCATTACCCTCTGCGAG 885 consensus_7329#1 ------------------------------------------------------------ consensus_7329#0 GGCAAGCCAACCATGCTGACGTCGTTCAAGCTGGCCATACACGTGGTGCCGGAAAGTTCC 945 consensus_7329#1 ------------------------------------------------------------ consensus_7329#0 GCCCGGATCGATGCGGGCGATTTCTACCTCACCAGCGAGGACCATCTCAATCTCAGCAAA 1005 consensus_7329#1 ------------------------------------------------------------ consensus_7329#0 CCGATCTGCCGGCAGTCATTCCTGTACCAGCGGCTAGTCGGTGCCATCCAGGAGGCGATC 1065 consensus_7329#1 ------------------------------------------------------------ consensus_7329#0 CGGTCCGGCGGCCCGGACAGTGTTAAGCTGGCCAACGTGGCGCAGGTAATGCCGAAAGCC 1125 consensus_7329#1 ------------------------------------------------------------ consensus_7329#0 GCCCAGCAGCAGCTCATTTTCCACGGCACCAAGAAGAGCGCCGGCAGCACAGCAGCATCG 1185 consensus_7329#1 ------------------------------------------------------------ consensus_7329#0 TCCGCCCTGTCCGGGCTTTACACGCAGCTCAAGCAGTTCGAGCAGCTGATGAATGTGTTT 1245 consensus_7329#1 ------------------------------------------------------------ consensus_7329#0 ATCTAAATCCAGACATGGCACAAACACACACACACACGCACCAGTTACCTCCACGCACCT 1305 consensus_7329#1 ------------------------------------------------------------ consensus_7329#0 CAGCCAAAGCTTGGACAACGAGACAACATCGCATTTCGACTTTCGATGTAAGAATGTGAT 1365 consensus_7329#1 ------------------------------------------------------------ consensus_7329#0 GAACTTAGGGTTAGGATCGTGTTGATTTAAGGTTGCTCTCCCGTGTTTGGTTGGTCGTTT 1425 consensus_7329#1 ------------------------------------------------------------ consensus_7329#0 TTGCCTCGCAACACACAGAGCAACACCGCACACCACAGGGTTTAGTTTTGTAGTTATTTA 1485 consensus_7329#1 ------------------------------------------------------------ consensus_7329#0 TTTTTTTGTTACACATAGGGTTTTTTTTAATTTGCAACTGGTGTTACCCCCCTCCCTCGC 1545 consensus_7329#1 ------------------------------------------------------------ consensus_7329#0 TTGCGAAGAAGCATTACGAATTTGACGG 1573 consensus_7329#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||