These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7333#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1478 fasta sequence [CCGGTTGGTGTTTCATCAGAAGAAACCGCTCGGGCCGGATGGTTTCCGATGGCTGAAGCTTCACTGCATTAATCTGACGGGGCTGAAAAAGCGTGACTCGGTGGAGGAGAGGCTACGGTACGCGGATGAGATAATGGACGACATACTGGACTCGGCCGATCGACCGCTGACGGGGCGAATGTGGTGGAGCAACTCGGACGAACCGTGGCAAACGCTCTCCTGCTGCATGGAAATAGCGAAGGTTCATCGATGTGCCGATCCGGAAAAGTTTGAAAGTGGCTTCCCGATCCATCAGGATGGTTCCTGCAACGGATTGCAGCATTATGCCGCGCTGGGTCGCGACACGCCCGGTGCGATCAGTGTCAACCTGGCGCCGGCCGAGGTGCCCCAGGATGTGTACAGCGCAGTGGCGGCACTGGTGGAGGAAAACCGTGCCCGCGATGCGCAGAACAACGTGAAGGTGGCGGCCGTGCTGGACGGTTTCATCCGGCGCAAGGTGATCAAACAAACTGTGATGACGACGGTGTACGGCGTGACACGGTACGGCGCGCGGAAGCAGATCGCCCGCCAGCTCGAGTACATCGACGAGTTCCCGAAGGAGTGGATCTGGCCCGCCTCGAGCTACCTGACGGTGAAAACGTTCGATGCGCTGAGCGAGATGTTCACCTCGGCCAAGGAAATACAGGACTGGTTCACCGACTGTGCCCGGTTGATATCGGCCGTCTGTGCGCAGAACGTGGAGTGGGTGACGCCGCTCGGGCTGCCCGTCGTGCAGCCGTACAATCGGGCGGATCGACCGGTGGCCTCCAGCAAGTCCGCCCAGCTGCCGGAACACTTTGCGATGGATTCGTACGAGAAGCCCAACATCATGAAGCAGAAGAACGCGTTCCCGCCCAACTTTGTGCATTCGCTCGATTCGAGCCACATGATGCTGACGTCGCTGTACTGCGAGCGGGCCGGGCTGACGTTCATCTCCGTTCACGATTGCTACTGGACGCATGCCTGCACTGTTCCCACGATGAACCGGATTTGTCGCGAGCAGTTTGTAGCGCTGCACTCCGAACCGATTCTGGAGGATTTGTCCAAG-TTTTTGGTACAGAAGTACAGCTACGATGAGAATGAAATCAGCAACGATGGTTCGGTAATTGATCTCACCAAACGCAAGCTGAACCGCATCCTGCAGCAGTGTCCCGATAAGGGCGACTTCGACCTACGCAAAGTGCTTGATTCGGTGTACTTCTTCAGCTAGAAAGCAATCACACGCGCCAAACTTAAAGGATTGGTCTAGTCAAGCCGGATCCCAAAAAGAATCCCAGCTCTCGTGCGGATGCGCGGTTCCGATACTGCGTGGTTCCCAGGATGCCCAGTATTCCTATGCCTAATGTCCGTTCGCTTCCCGCGCATACTTATACTAGCCATTGATGGACCGGAAAGGTACACATACGCACGGCCTCCTCTCCTGCCCCAGTGAGTTTGCC] [+] EMBL BM602144 [CCGGTTGGTGTTTCATCAGAAGAAACCGCTCGGGCCGGATGGTTTCCGATGGCTGAAGCTTCACTGCATTAATCTGACGGGGCTGAAAAAGCGTGACTCGGTGGAGGAGAGGCTACGGTACGCGGATGAGATAATGGACGACATACTGGACTCGGCCGATCGACCGCTGACGGGGCGAATGTGGTGGAGCAACTCGGACGAACCGTGGCAAACGCTCTCCTGCTGCATGGAAATAGCGAAGGTTCATCGATGTGCCGATCCGGAAAAGTTTGAAAGTGGCTTCCCGATCCATCAGGATGGTTCCTGCAACGGATTGCAGCATTATGCCGCGCTGGGTCGCGACACGCCCGGTGCGATCAGTGTCAACCTGGCGCCGGCCGAGGTGCCCCAGGATGTGTACAGCGCAGTGGCGGCACTGGTGGAGGAAAACCGTGCCCGCGATGCGCAGAACAACGTGAAGGTGGCGGCCGTGCTGGACGGTTTCATCCGGCGCAAGGTGATCAAACAAACTGTGATGACGACGGTGTACGGCGTGACACGGTACGGCGCGCGGAAGCAGATCGCCCGCCAGCTCGAGTACATCGACGAGTTCCCGAAGGAGTGGATCTGGCCCGCCTCGAGCTACCTGACGGTGAAAACGTTCGATGCGCTGAGCGAGATGT ] [+] EMBL BM618398 [ ccgGGAAAACCGTGCCCGCGATGCGCAGAACAACGTGAAGGTGGCGGCCGTGCTGGACGGTTTCATCCGGCGCAAGGTGATCAAACAAACT TGATGACGACGGTGTACGGCGTGACACGGTACGGCGCGCGGAAGCAGATCGCCCGCCAGCTCGAGTACATCGACGAGTTCCCGAAGGAGTGGATCTGGCCCGCCTCGAGCTACCTGACGGTGAAAACGTTCGATGCGCTGAGCGAGATGTTCACCTCGGCCAAGGAAATACAGGACTGGTTCACCGACTGTGCCCGGTTGATATCGGCCGTCTGTGCGCAGAACGTGGAGTGGGTGACGCCGCTCGGGCTGCCCGTCGTGCAGCCGTACAATCGGGCGGATCGACCGGTGGCCTCCAGCAAGTCCGCCCAGCTGCCGGAACACTTTGCGATGGATTCGTACGAGAAGCCCAACATCATGAAGCAGAAGAACGCGTTCCCGCCCAACTTTGTGCATTCGCTCGATTCGAGCCACATGATGCTGACGTCGCTGTACTGCGAGCGGGCCGGGCTGACGTTCATCTCCGTTCACGATTGCTACTGGACGCATGCCTGCACTGTTCCCACGATGAACCGGATTTGTCGCGAGCAGTTTGTAGCGCTGCACTCCGAACCGATTCTGGAGGATTTGTCCAAGTTTTTTGGTACA ] [+] EMBL BM629226 [ ccGAAAACCGTGCCCGCGATGCGCAGAACAACGTGAAGGTGGCGGCCGTGCTGGACGGTTTCATCCGGCGCAAGGTGATCAAACAAACTGTGATGACGACGGTGTACGGCGTGACACGGTACGGCGCGCGGAAGCAGATCGCCCGCCAGCTCGAGTACATCGACGAGTTCCCGAAGGAGTGGATCTGGCCCGCCTCGAGCTACCTGACGGTGAAAACGTTCGATGCGCTGAGCGAGATGTTCACCTCGGCCAAGGAAATACAGGACTGGTTCACCGACTGTGCCCGGTTGATATCGGCCGTCTGTGCGCAGAACGTGGAGTGGGTGACGCCGCTCGGGCTGCCCGTCGTGCAGCCGTACAATCGGGCGGATCGACCGGTGGCCTCCAGCAAGTCCGCCCAGCTGCCGGAACACTTTTCGATGGATTCGTACGAGAAGCCCAACATCATGAAGCAGAAGAACGCGTTCCCGCCCAACTTTGTGCATTCGCTCGATTCGAGCCACATGATGCTGACGTCGCTGTACTGCGAGCGGGCCGGGCTGAC ] [+] EMBL BX618189 [ TGAAGGTGGCGGCCGTGCTGGACGGTTTCATCCGGCGCAAGGTGATCAAACAAACTGTGATGACGACGGTGTACGGCGTGACACGGTACGGCGCGCGGAAGCAGATCGCCCGCCAGCTCGAGTACATCGACGAGTTCCCGAAGGAGTGGATCTGGCCCGCCTCGAGCTACCTGACGGTGAAAACGTTCGATGCGCTGAGCGAGATGTTCACCTCGGCCAAGGAAATACAGGACTGGTTCACCGACTGTGCCCGGTTGATATCGGCCGTCTGTGCGCAGAACGTGGAGTGGGTGACGCCGCTCGGGCTGCCCGTCGTGCAGCCGTACAATCGGGCGGATCGACCGGTGGCCTCCAGCAAGTCCGCCCAGCTGCCGGAACACTTTGCGATGGATTCGTACGAGAAGCCCAACATCATGAAGCAGAAGAACGCGTTCCCGCCCAACTTTGTGCATTCGCTCGATTCGAGCCACATGATGCTGACGTCGCTGTACTGCGAGCGGGCCGGGCTGACGTTCATCTCCGTTCACGATTGCTACTGGACTCATGCCTGCACTGTTCCCACGATGAACCGGATTTGTCGCGAGCAGTTTGTAGCGCTGCACTCCGAACCGATTCTGGAGGATTTGTCCAAG TTTTTGGTACAGAAGTACAGCTACGATGAGAATGAAATCAGCAACGATGGTTCGGTAATTGATCTCACCAAACGCAAGCTGAACCGCATCCTGCAGCAGTGTCCCGATAAGGGCGACTTCGACCTACGCAAAGTGCTTGATT ] [+] EMBL BM596213 [ ccgAAACGTTCGATGCGCTGAGCGAGATGTTCACCTCGGCCAAGGAAATACAGGACTGGTTCACCGACTGTGCCCGGTTGATATCGGCCGTCTGTGCGCAGAACGTGGAGTGGGTGACGCCGCTCGGGCTGCCCGTCGTGCAGCCGTACAATCGGGCGGATCGACCGGTGGCCTCCAGCAAGTCCGCCCAGCTGCCGGAACAC ] [+] EMBL BX612937 [ ACAATCGGGCGGATCGACCGGTGGCCTCCAGCAAGTCCGCCCAGCTGCCGGAACACTTTGCGATGGATTCGTACGAGAAGCCCAACATCATGAAGCAGAAGAACGCGTTCCCGCCCAACTTTGTGCATTCGCTCGATTCGAGCCACATGATGCTGACGTCGCTGTACTGCGAGCGGGCCGGGCTGACGTTCATCTCCGTTCACGATTGCTACTGGACGCATGCCTGCACTGTTCCCACGATGAACCGGATTTGTCGCGAGCAGTTTGTAGCGCTGCACTCCGAACCGATTCTGGAGGATTTGTCCAAG TTTTTGGTACAGAAGTACAGCTACGATGAGAATGAAATCAGCAACGATGGTTCGGTAATTGATCTCACCAAACGCAAGCTGAACCGCATCCTGCAGCAGTGTCCCGATAAGGGCGACTTCGACCTACGCAAAGTGCTTGATTCGGTGTACTTCTTCAGCTAGAAAGCAATCACACGCGCCAAACTTAAAGGATTGGTCTAGTCAAGCCGGATCCCAAAAAGAATCCCAGCTCTCGTGCGGATGCGCGGTTCCGATACTGCGTGGTTCCCAGGATGCCCAGTATTCCTATGCCTAATGTCCGTTCGCTTCCCGCGCATACTTATACTAGCCATTGATGGACCGGAAAGGTACACATACGCACGGCCTCCTCTCCTGCCCCAGTGAGTTTGCC] consensusID : consensus_7333#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 822 fasta sequence [CAGAATCGGCACGTAGGAGGAAATACAGGACTGGTTCACCGACTGTGCCCGGTTGATATCGGCCGTCTGTGCGCAGAACGTGGAGTGGGTGACGCCGCTCGGGCTGCCCGTCGTGCAGCCGTACAATCGGGCGGATCGACCGGTGGCCTCCAGCAAGTCCGCCCAGCTGCCGGAACACTTTGCGATGGATTCGTACGAGAAGCCCAACATCATGAAGCAGAAGAACGCGTTCCCGCCCAACTTTGTGCATTCGCTCGATTCGAGCCACATGATGCTGACGTCGCTGTACTGCGAGCGGGCCGGGCTGACGTTCATCTCCGTTCACGATTGCTACTGGACGCATGCCTGCACTGTTCCCACGATGAACCGGATTTGTCGCGAGCAGTTTGTAGCGCTGCACTCCGAACCGATTCTGGAGGATTTGTCCAAGTTTTATGGTACAGAAGTACAGCTACGATGAGAATGAACATCAGCAACGATGGTTCGGTAATTGATCTCACCAAACGCAAGCTGAACCGGCATCCTGCAGCAGTGTCCCGATAAGGGCGACTTCGACCTACGCAAAGTGCTTGATTCGGTGTACTTCTTCAGGCTAGAAAGCAATCACAGCGGCGCCAAACTTAAAGGATTGGTCTAGGTCAAGCCGGATCCGAGNAAGAATCCCAAGGTACTACGGTGGCGGGAATTGCTCGCAGGGATTTCCCGAATTACGTGGAGCGATTGGGTTTCCCCCAAGGGAATTGNCCCGAAGGTAATTTCCCTAATTGGGCGCCTTAAAATNGGTCCACGAGGTACAGGGGTTTTCCCCGGGAGGCATTNNGC] [+] EMBL BX468315 [CAGAATCGGCACGTAGGAGGAAATACAGGACTGGTTCACCGACTGTGCCCGGTTGATATCGGCCGTCTGTGCGCAGAACGTGGAGTGGGTGACGCCGCTCGGGCTGCCCGTCGTGCAGCCGTACAATCGGGCGGATCGACCGGTGGCCTCCAGCAAGTCCGCCCAGCTGCCGGAACACTTTGCGATGGATTCGTACGAGAAGCCCAACATCATGAAGCAGAAGAACGCGTTCCCGCCCAACTTTGTGCATTCGCTCGATTCGAGCCACATGATGCTGACGTCGCTGTACTGCGAGCGGGCCGGGCTGACGTTCATCTCCGTTCACGATTGCTACTGGACGCATGCCTGCACTGTTCCCACGATGAACCGGATTTGTCGCGAGCAGTTTGTAGCGCTGCACTCCGAACCGATTCTGGAGGATTTGTCCAAGTTTTATGGTACAGAAGTACAGCTACGATGAGAATGAACATCAGCAACGATGGTTCGGTAATTGATCTCACCAAACGCAAGCTGAACCGGCATCCTGCAGCAGTGTCCCGATAAGGGCGACTTCGACCTACGCAAAGTGCTTGATTCGGTGTACTTCTTCAGGCTAGAAAGCAATCACAGCGGCGCCAAACTTAAAGGATTGGTCTAGGTCAAGCCGGATCCGAGNAAGAATCCCAAGGTACTACGGTGGCGGGAATTGCTCGCAGGGATTTCCCGAATTACGTGGAGCGATTGGGTTTCCCCCAAGGGAATTGNCCCGAAGGTAATTTCCCTAATTGGGCGCCTTAAAATNGGTCCACGAGGTACAGGGGTTTTCCCCGGGAGGCATTNNGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7333#0 CCGGTTGGTGTTTCATCAGAAGAAACCGCTCGGGCCGGATGGTTTCCGATGGCTGAAGCT 60 consensus_7333#1 ------------------------------------------------------------ consensus_7333#0 TCACTGCATTAATCTGACGGGGCTGAAAAAGCGTGACTCGGTGGAGGAGAGGCTACGGTA 120 consensus_7333#1 ------------------------------------------------------------ consensus_7333#0 CGCGGATGAGATAATGGACGACATACTGGACTCGGCCGATCGACCGCTGACGGGGCGAAT 180 consensus_7333#1 ------------------------------------------------------------ consensus_7333#0 GTGGTGGAGCAACTCGGACGAACCGTGGCAAACGCTCTCCTGCTGCATGGAAATAGCGAA 240 consensus_7333#1 ------------------------------------------------------------ consensus_7333#0 GGTTCATCGATGTGCCGATCCGGAAAAGTTTGAAAGTGGCTTCCCGATCCATCAGGATGG 300 consensus_7333#1 ------------------------------------------------------------ consensus_7333#0 TTCCTGCAACGGATTGCAGCATTATGCCGCGCTGGGTCGCGACACGCCCGGTGCGATCAG 360 consensus_7333#1 ------------------------------------------------------------ consensus_7333#0 TGTCAACCTGGCGCCGGCCGAGGTGCCCCAGGATGTGTACAGCGCAGTGGCGGCACTGGT 420 consensus_7333#1 ------------------------------------------------------------ consensus_7333#0 GGAGGAAAACCGTGCCCGCGATGCGCAGAACAACGTGAAGGTGGCGGCCGTGCTGGACGG 480 consensus_7333#1 ------------------------------------------------------------ consensus_7333#0 TTTCATCCGGCGCAAGGTGATCAAACAAACTGTGATGACGACGGTGTACGGCGTGACACG 540 consensus_7333#1 ------------------------------------------------------------ consensus_7333#0 GTACGGCGCGCGGAAGCAGATCGCCCGCCAGCTCGAGTACATCGACGAGTTCCCGAAGGA 600 consensus_7333#1 ------------------------------------------------------------ consensus_7333#0 GTGGATCTGGCCCGCCTCGAGCTACCTGACGGTGAAAACGTTCGATGCGCTGAGCGAGAT 660 consensus_7333#1 ------------------------------------------------------CAGAAT 6 * ** consensus_7333#0 GTTCACCTCGGCCAAGGAAATACAGGACTGGTTCACCGACTGTGCCCGGTTGATATCGGC 720 consensus_7333#1 CGGCACGTAGG---AGGAAATACAGGACTGGTTCACCGACTGTGCCCGGTTGATATCGGC 63 *** * ** ********************************************** consensus_7333#0 CGTCTGTGCGCAGAACGTGGAGTGGGTGACGCCGCTCGGGCTGCCCGTCGTGCAGCCGTA 780 consensus_7333#1 CGTCTGTGCGCAGAACGTGGAGTGGGTGACGCCGCTCGGGCTGCCCGTCGTGCAGCCGTA 123 ************************************************************ consensus_7333#0 CAATCGGGCGGATCGACCGGTGGCCTCCAGCAAGTCCGCCCAGCTGCCGGAACACTTTGC 840 consensus_7333#1 CAATCGGGCGGATCGACCGGTGGCCTCCAGCAAGTCCGCCCAGCTGCCGGAACACTTTGC 183 ************************************************************ consensus_7333#0 GATGGATTCGTACGAGAAGCCCAACATCATGAAGCAGAAGAACGCGTTCCCGCCCAACTT 900 consensus_7333#1 GATGGATTCGTACGAGAAGCCCAACATCATGAAGCAGAAGAACGCGTTCCCGCCCAACTT 243 ************************************************************ consensus_7333#0 TGTGCATTCGCTCGATTCGAGCCACATGATGCTGACGTCGCTGTACTGCGAGCGGGCCGG 960 consensus_7333#1 TGTGCATTCGCTCGATTCGAGCCACATGATGCTGACGTCGCTGTACTGCGAGCGGGCCGG 303 ************************************************************ consensus_7333#0 GCTGACGTTCATCTCCGTTCACGATTGCTACTGGACGCATGCCTGCACTGTTCCCACGAT 1020 consensus_7333#1 GCTGACGTTCATCTCCGTTCACGATTGCTACTGGACGCATGCCTGCACTGTTCCCACGAT 363 ************************************************************ consensus_7333#0 GAACCGGATTTGTCGCGAGCAGTTTGTAGCGCTGCACTCCGAACCGATTCTGGAGGATTT 1080 consensus_7333#1 GAACCGGATTTGTCGCGAGCAGTTTGTAGCGCTGCACTCCGAACCGATTCTGGAGGATTT 423 ************************************************************ consensus_7333#0 GTCCAAGTTTT-TGGTACAGAAGTACAGCTACGATGAGAATGAA-ATCAGCAACGATGGT 1138 consensus_7333#1 GTCCAAGTTTTATGGTACAGAAGTACAGCTACGATGAGAATGAACATCAGCAACGATGGT 483 *********** ******************************** *************** consensus_7333#0 TCGGTAATTGATCTCACCAAACGCAAGCTGAACCG-CATCCTGCAGCAGTGTCCCGATAA 1197 consensus_7333#1 TCGGTAATTGATCTCACCAAACGCAAGCTGAACCGGCATCCTGCAGCAGTGTCCCGATAA 543 *********************************** ************************ consensus_7333#0 GGGCGACTTCGACCTACGCAAAGTGCTTGATTCGGTGTACTTCTTCAG-CTAGAAAGCAA 1256 consensus_7333#1 GGGCGACTTCGACCTACGCAAAGTGCTTGATTCGGTGTACTTCTTCAGGCTAGAAAGCAA 603 ************************************************ *********** consensus_7333#0 TCACAC--GCGCCAAACTTAAAGGATTGGTCTAG-TCAAGCCGGATCCCAAAAAGAATCC 1313 consensus_7333#1 TCACAGCGGCGCCAAACTTAAAGGATTGGTCTAGGTCAAGCCGGATCCGAGNAAGAATCC 663 ***** ************************** ************* * ******** consensus_7333#0 CAGCTCTCGTGCGGATGCGCGGTTCCGATACTGCGTGGTTCCCAGGATGCCCAGTATTCC 1373 consensus_7333#1 CAAGGTAC-TACGGTGGCG-GGAATTGCTCGCAGGGATTTCCCGAATTACGTGGAGCGAT 721 ** * * *** *** ** * * * ***** * * * consensus_7333#0 TATGCCTAATGTCCGTTCGCT-TCCCGCGCATACTTATACTAGCCATTGATGGACCGGAA 1432 consensus_7333#1 TGGGTTTCCCCCAAGGGAATTGNCCCGAAGGTAATTTCCCTAAT--TGGGCGCCTTAAAA 779 * * * * * **** ** ** *** * * * ** consensus_7333#0 -AGGTACAC-ATACGCACGGCCTCCTCTCCTGCCCCAGTGAGTTTGCC 1478 consensus_7333#1 TNGGTCCACGAGGTACAGGGGTTTTCCCCGGGAGGCATTNNGC----- 822 *** *** * ** ** * * * * ** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||