These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1006 fasta sequence [AACGCAACTTTCCTTTCGATTTCACCAAAACGCAAGATGTTGGCCCACCACGGCGGGCCCGTAAACTTTCGCATCATCATTTAGTGTTCCCTTAGTGCAGAGCCCACACATACACACAC-C-ACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAACGCA-TCGGTTTGTCCGGATCGCGGGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCCGCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTTATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGGTGCTGTGGTTCGTCGTGCGCCGCACGAAAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTCTGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAGATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCACGTGAGGAGGGGACGGGATGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAGAAGGATAGCGGCTAATGTGAGGCACACGCGTTCCATGTAGGTAGTAAGCGAAGACGGGGGAAGCCGCGGGGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGGCGGGAGACGC-GGGGAGAAGTTGGTTGATTTGTGTGTTTGTGACCCACGGCTAGACACACTCAAGCTTTACAAGTAAACACTAATGGCTAAGAGTATTTTTTAATTTA] [+] EMBL CNS08RPB [AACGCAACTTTCCTTTCGATTTCACCAAAACGCAAGATGTTGGCCCACCACGGCGGGCCCGTAAACTTTCGCATCATCATTTAGTGTTCCCTTAGTGCAGAGCCCACACATACACACAC C ACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAACGCA TCGGTTTGTCCGGATCGCGGGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCCGCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTTATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGGTGCTGTGGTTCGTCGTGCGCCGCACGAAAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTCTGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAGATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCACGTGAGGAGGGGACGGGATGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAGAAGGATAGCGGCTAATGTGAGGCACACGCGTTCCATGTAGGTAGTAAGCGAAGACGGGGGAAGCCGCGGGGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGGCGGGAGACGC GGGGAGAAGTTGGTTGATTTGTGTGTTTGTGACCCACGGCTAGACACACTCAAGCTTTACAAGTAAACACTAATGGCTAAGAGTATTTTTTAATTTA] [+] EMBL CNS09996 [ TCCTTTCGATTTCACCAAAACGCAAGATGTTGG CCACCACGGCGGGCCCGTAAACTTTCGCATCATCATTTAGTGTTCCTTTAGTGCAGAGCCCACACATACACACACACGACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAACGCATTCGGTTTGTGCGGATCACGGGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCCGCAACACGCAGTGGGATCCGTACCTGCTGGTTGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTTATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGCTACTGTGGTTCGTCGTGCGCCGCA GATAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTCTGCGCCGCGC ] [-] EMBL CNS09997 [ AAGGATAGCGGCTAATTTTTGGAACACGCGTTCCAAGTAGGTAGTAAGCGAAGAC GGGGAAGCCG AGAGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGGCGGGAAACGCGGGGGGGAAGTTGGTTGATTTGTGTGTTTGTGACCCCCGGCTAGACACACTCAAGCTTTACAAGTAA ] consensusID : consensus_7334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 844 fasta sequence [GGCCCACCACGGCGGGCCCGTAAACTTTCGCATCATCATTTAGTGTTCCCTTAGTGCAGAGCCCACACATACACACACCACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAAGCGCATCGGTTTGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCCGCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTCATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGCTGCTGTGGTTCGTCGTGCGCCGCACGAAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTCTGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAGATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCACGTGAGGAGGGGACGGGACGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAGAAGGATAGCGGCTAATGTGTGGCACACGCGTTCCAAGTAGGTAGTAAGCGAAGACGGGGAAGCCGAGAGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGGC] [+] EMBL BX608085 [GGCCCACCACGGCGGGCCCGTAAACTTTCGCATCATCATTTAGTGTTCCCTTAGTGCAGAGCCCACACATACACACACCACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAAGCGCATCGGTTTGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCCGCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTCATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGCTGCTGTGGTTCGTCGTGCGCCGCACGAAGCTGTGCCTGGACTTTAGCTT ] [+] EMBL BX616888 [ AACACCCGGATAGCATTCCGCCCGGGGTCTGGGAGTCAAGGGCGAAGCGCATCGGTTTGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCCGCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTCATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGCTGCTGTGGTTCGTCGTGCGCCGCACGAAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTCTGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAGATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCACGTGAGGAGGGGACGGGACGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAGAAGGATAGCGGCTAATGTGTGGCACACGCGTTCCAAGTAGGTAGTAAGCGAAGACGGGGAAGCCGAGAGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGGC] [+] EMBL BM639397 [ ccgCGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTCATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGCTGCTGTGGTTCGTCGTGCGCCGCACGAAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTCTGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAGATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCACGTGAGGAGGGGACGGGACGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAGAAGGATAGCGGCTAATGTGTGGCACACGCGTTCCAAGTAGGTAGTAAGCGAAGACGGGGAAGCCGAGAGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGG ] [-] EMBL CNS08RPC [ GTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7334#0 AACGCAACTTTCCTTTCGATTTCACCAAAACGCAAGATGTTGGCCCACCACGGCGGGCCC 60 consensus_7334#1 -----------------------------------------GGCCCACCACGGCGGGCCC 19 ******************* consensus_7334#0 GTAAACTTTCGCATCATCATTTAGTGTTCCCTTAGTGCAGAGCCCACACATACACACACC 120 consensus_7334#1 GTAAACTTTCGCATCATCATTTAGTGTTCCCTTAGTGCAGAGCCCACACATACACACACC 79 ************************************************************ consensus_7334#0 ACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAA-CGCA 179 consensus_7334#1 ACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAAGCGCA 139 ******************************************************* **** consensus_7334#0 TCGGTTTGTCCGGATCGCGGGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCC 239 consensus_7334#1 TCGGTTTGT-------------GCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCC 186 ********* ************************************** consensus_7334#0 GCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGC 299 consensus_7334#1 GCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGC 246 ************************************************************ consensus_7334#0 TGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACA 359 consensus_7334#1 TGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACA 306 ************************************************************ consensus_7334#0 CGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGG 419 consensus_7334#1 CGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGG 366 ************************************************************ consensus_7334#0 TTATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGGTGCTGTGGTTCGTCGTGC 479 consensus_7334#1 TCATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGCTGCTGTGGTTCGTCGTGC 426 * *************************************** ****************** consensus_7334#0 GCCGCACGAAAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATA 539 consensus_7334#1 GCCGCACGAA-GCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATA 485 ********** ************************************************* consensus_7334#0 TGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTC 599 consensus_7334#1 TGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTC 545 ************************************************************ consensus_7334#0 TGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAG 659 consensus_7334#1 TGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAG 605 ************************************************************ consensus_7334#0 ATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCAC 719 consensus_7334#1 ATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCAC 665 ************************************************************ consensus_7334#0 GTGAGGAGGGGACGGGATGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAG 779 consensus_7334#1 GTGAGGAGGGGACGGGACGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAG 725 ***************** ****************************************** consensus_7334#0 AAGGATAGCGGCTAATGTGAGGCACACGCGTTCCATGTAGGTAGTAAGCGAAGACGGGGG 839 consensus_7334#1 AAGGATAGCGGCTAATGTGTGGCACACGCGTTCCAAGTAGGTAGTAAGCGAAGACGGGG- 784 ******************* *************** *********************** consensus_7334#0 AAGCCGCGGGGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGG 899 consensus_7334#1 AAGCCG-AGAGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGG 843 ****** * ************************************************** consensus_7334#0 CGGGAGACGCGGGGAGAAGTTGGTTGATTTGTGTGTTTGTGACCCACGGCTAGACACACT 959 consensus_7334#1 C----------------------------------------------------------- 844 * consensus_7334#0 CAAGCTTTACAAGTAAACACTAATGGCTAAGAGTATTTTTTAATTTA 1006 consensus_7334#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||