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Anopheles gambiae
cluster # 7334 cluster # 7334       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7334#0 length = 1006 sequences # 3  
consensus_7334#1 length = 844 sequences # 4  

consensusID : consensus_7334#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1006
fasta sequence
                              [AACGCAACTTTCCTTTCGATTTCACCAAAACGCAAGATGTTGGCCCACCACGGCGGGCCCGTAAACTTTCGCATCATCATTTAGTGTTCCCTTAGTGCAGAGCCCACACATACACACAC-C-ACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAACGCA-TCGGTTTGTCCGGATCGCGGGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCCGCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTTATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGGTGCTGTGGTTCGTCGTGCGCCGCACGAAAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTCTGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAGATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCACGTGAGGAGGGGACGGGATGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAGAAGGATAGCGGCTAATGTGAGGCACACGCGTTCCATGTAGGTAGTAAGCGAAGACGGGGGAAGCCGCGGGGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGGCGGGAGACGC-GGGGAGAAGTTGGTTGATTTGTGTGTTTGTGACCCACGGCTAGACACACTCAAGCTTTACAAGTAAACACTAATGGCTAAGAGTATTTTTTAATTTA]

[+] EMBL CNS08RPB             [AACGCAACTTTCCTTTCGATTTCACCAAAACGCAAGATGTTGGCCCACCACGGCGGGCCCGTAAACTTTCGCATCATCATTTAGTGTTCCCTTAGTGCAGAGCCCACACATACACACAC C ACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAACGCA TCGGTTTGTCCGGATCGCGGGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCCGCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTTATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGGTGCTGTGGTTCGTCGTGCGCCGCACGAAAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTCTGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAGATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCACGTGAGGAGGGGACGGGATGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAGAAGGATAGCGGCTAATGTGAGGCACACGCGTTCCATGTAGGTAGTAAGCGAAGACGGGGGAAGCCGCGGGGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGGCGGGAGACGC GGGGAGAAGTTGGTTGATTTGTGTGTTTGTGACCCACGGCTAGACACACTCAAGCTTTACAAGTAAACACTAATGGCTAAGAGTATTTTTTAATTTA]
[+] EMBL CNS09996             [          TCCTTTCGATTTCACCAAAACGCAAGATGTTGG CCACCACGGCGGGCCCGTAAACTTTCGCATCATCATTTAGTGTTCCTTTAGTGCAGAGCCCACACATACACACACACGACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAACGCATTCGGTTTGTGCGGATCACGGGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCCGCAACACGCAGTGGGATCCGTACCTGCTGGTTGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTTATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGCTACTGTGGTTCGTCGTGCGCCGCA GATAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTCTGCGCCGCGC                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CNS09997             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAGGATAGCGGCTAATTTTTGGAACACGCGTTCCAAGTAGGTAGTAAGCGAAGAC GGGGAAGCCG AGAGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGGCGGGAAACGCGGGGGGGAAGTTGGTTGATTTGTGTGTTTGTGACCCCCGGCTAGACACACTCAAGCTTTACAAGTAA                               ]


>consensus_7334#0 AACGCAACTTTCCTTTCGATTTCACCAAAACGCAAGATGTTGGCCCACCACGGCGGGCCC GTAAACTTTCGCATCATCATTTAGTGTTCCCTTAGTGCAGAGCCCACACATACACACACC ACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAACGCAT CGGTTTGTCCGGATCGCGGGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCCG CAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGCT GTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACAC GCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGT TATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGGTGCTGTGGTTCGTCGTGCG CCGCACGAAAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATAT GCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTCT GCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAGA TCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCACG TGAGGAGGGGACGGGATGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAGA AGGATAGCGGCTAATGTGAGGCACACGCGTTCCATGTAGGTAGTAAGCGAAGACGGGGGA AGCCGCGGGGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGGC GGGAGACGCGGGGAGAAGTTGGTTGATTTGTGTGTTTGTGACCCACGGCTAGACACACTC AAGCTTTACAAGTAAACACTAATGGCTAAGAGTATTTTTTAATTTA



consensusID : consensus_7334#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 844
fasta sequence
                              [GGCCCACCACGGCGGGCCCGTAAACTTTCGCATCATCATTTAGTGTTCCCTTAGTGCAGAGCCCACACATACACACACCACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAAGCGCATCGGTTTGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCCGCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTCATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGCTGCTGTGGTTCGTCGTGCGCCGCACGAAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTCTGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAGATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCACGTGAGGAGGGGACGGGACGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAGAAGGATAGCGGCTAATGTGTGGCACACGCGTTCCAAGTAGGTAGTAAGCGAAGACGGGGAAGCCGAGAGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGGC]

[+] EMBL BX608085             [GGCCCACCACGGCGGGCCCGTAAACTTTCGCATCATCATTTAGTGTTCCCTTAGTGCAGAGCCCACACATACACACACCACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAAGCGCATCGGTTTGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCCGCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTCATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGCTGCTGTGGTTCGTCGTGCGCCGCACGAAGCTGTGCCTGGACTTTAGCTT                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BX616888             [                                                                                        AACACCCGGATAGCATTCCGCCCGGGGTCTGGGAGTCAAGGGCGAAGCGCATCGGTTTGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCCGCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTCATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGCTGCTGTGGTTCGTCGTGCGCCGCACGAAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTCTGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAGATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCACGTGAGGAGGGGACGGGACGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAGAAGGATAGCGGCTAATGTGTGGCACACGCGTTCCAAGTAGGTAGTAAGCGAAGACGGGGAAGCCGAGAGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGGC]
[+] EMBL BM639397             [                                                                                                                                                                                                                      ccgCGCCCAGATCGTGGCGATGCAGGCCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGGTCATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGCTGCTGTGGTTCGTCGTGCGCCGCACGAAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTCTGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAGATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCACGTGAGGAGGGGACGGGACGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAGAAGGATAGCGGCTAATGTGTGGCACACGCGTTCCAAGTAGGTAGTAAGCGAAGACGGGGAAGCCGAGAGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGG  ]
[-] EMBL CNS08RPC             [                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAA                                                                                                                                                                                                                                                                                                                  ]


>consensus_7334#1 GGCCCACCACGGCGGGCCCGTAAACTTTCGCATCATCATTTAGTGTTCCCTTAGTGCAGA GCCCACACATACACACACCACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGG GAGTCAAGGGCGAAGCGCATCGGTTTGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAA CGTTCCGCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGG CCCTGCTGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGA ACCACACGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGAC GATTGGTCATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGCTGCTGTGGTTCG TCGTGCGCCGCACGAAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGG TGATATGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACG CGGTCTGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGA AGGAGATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGC GGCACGTGAGGAGGGGACGGGACGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGC AGAAGAAGGATAGCGGCTAATGTGTGGCACACGCGTTCCAAGTAGGTAGTAAGCGAAGAC GGGGAAGCCGAGAGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGT GGGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7334#0      AACGCAACTTTCCTTTCGATTTCACCAAAACGCAAGATGTTGGCCCACCACGGCGGGCCC 60
consensus_7334#1      -----------------------------------------GGCCCACCACGGCGGGCCC 19
                                                               *******************

consensus_7334#0      GTAAACTTTCGCATCATCATTTAGTGTTCCCTTAGTGCAGAGCCCACACATACACACACC 120
consensus_7334#1      GTAAACTTTCGCATCATCATTTAGTGTTCCCTTAGTGCAGAGCCCACACATACACACACC 79
                      ************************************************************

consensus_7334#0      ACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAA-CGCA 179
consensus_7334#1      ACAAAAGCAAACACCCGGATAGCATTCCGCCCGGGGCCTGGGAGTCAAGGGCGAAGCGCA 139
                      ******************************************************* ****

consensus_7334#0      TCGGTTTGTCCGGATCGCGGGTGCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCC 239
consensus_7334#1      TCGGTTTGT-------------GCTCGCACCAGCCATGAAGAAGCTCACCGGAACGTTCC 186
                      *********             **************************************

consensus_7334#0      GCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGC 299
consensus_7334#1      GCAACACGCAGTGGGATCCGTACCTGCTGGTCGCCCAGATCGTGGCGATGCAGGCCCTGC 246
                      ************************************************************

consensus_7334#0      TGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACA 359
consensus_7334#1      TGTACGTTAGCCTCGGGACCATCATGTACGTGATGGACTTTTTCGCCGAGGCGAACCACA 306
                      ************************************************************

consensus_7334#0      CGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGG 419
consensus_7334#1      CGCTGGACCACATATTCGAGTATCACGAAATACACGTAACCGATCTCGGCGGACGATTGG 366
                      ************************************************************

consensus_7334#0      TTATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGGTGCTGTGGTTCGTCGTGC 479
consensus_7334#1      TCATCGTTGCCTTCATACTCAACTCTCTAGTCGGTGCCGGGCTGCTGTGGTTCGTCGTGC 426
                      * *************************************** ******************

consensus_7334#0      GCCGCACGAAAGCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATA 539
consensus_7334#1      GCCGCACGAA-GCTGTGCCTGGACTTTAGCTTTACCTTCCACTTTACGCACCTGGTGATA 485
                      ********** *************************************************

consensus_7334#0      TGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTC 599
consensus_7334#1      TGCTGGTGGTACAACGAGGCCTTCCCGTCGACGATCGGCTGGTGGATGCTGAACGCGGTC 545
                      ************************************************************

consensus_7334#0      TGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAG 659
consensus_7334#1      TGCGCCGCGCTCATGTGCGTGTGCAGCGAGTTTCTCTGCCTGAAGACGGAGCTGAAGGAG 605
                      ************************************************************

consensus_7334#0      ATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCAC 719
consensus_7334#1      ATCCCGGTCGGGTATACCGCGCTCAACAACAAGGTCGATCTGTAGCGTGTGCAGCGGCAC 665
                      ************************************************************

consensus_7334#0      GTGAGGAGGGGACGGGATGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAG 779
consensus_7334#1      GTGAGGAGGGGACGGGACGGCGTTTAGCAAAGCAGGGACAGGTTTCGCTGAGCGCAGAAG 725
                      ***************** ******************************************

consensus_7334#0      AAGGATAGCGGCTAATGTGAGGCACACGCGTTCCATGTAGGTAGTAAGCGAAGACGGGGG 839
consensus_7334#1      AAGGATAGCGGCTAATGTGTGGCACACGCGTTCCAAGTAGGTAGTAAGCGAAGACGGGG- 784
                      ******************* *************** *********************** 

consensus_7334#0      AAGCCGCGGGGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGG 899
consensus_7334#1      AAGCCG-AGAGGGGGAAAGGCCATTGCTTCAGGGATGTATAGGCACTCCAAAGGGGTGGG 843
                      ******  * **************************************************

consensus_7334#0      CGGGAGACGCGGGGAGAAGTTGGTTGATTTGTGTGTTTGTGACCCACGGCTAGACACACT 959
consensus_7334#1      C----------------------------------------------------------- 844
                      *                                                           

consensus_7334#0      CAAGCTTTACAAGTAAACACTAATGGCTAAGAGTATTTTTTAATTTA 1006
consensus_7334#1      -----------------------------------------------
                                                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)