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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7336#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 842 fasta sequence
[CCGGGCTTGACATCAGTGCTGAAAGTGAACATTTTGCTTGAGCTAGTTCGTGATAAACTTTCCTGTTTGCGAAAATGAAAATAGTGAGCAATCTGCTTAAGGCTCTGTGTGC---TGTGCTGGCAATGCTGTTACTACTTCCCGTAGAAGTTTTACCATCTCCCGTGCCTCAAAATCCAATCCGAACCATCGATGCCATCGACCAAGGCCCGTTCCAAACCGGACATCGAATTCGGCAGCGAGGACATCACAGGAAGTTCTTCCCAGCACCGCCGGCTATTACTGGATAATAGTAACACCTTTGAGGCCAAATATAGTAACCAATAGGAG-CCGGA-ACCATTTAGTATGT-AGAGCCCTTATCGT-AAGCGTTGCTGAAACATTCAA-CCAATAGTTTCGGC-CCG-AAAC--TCCACCTTTGGGTTGTG-TGCGTGTCTGCGAAA---TCGATTGAACCATGCTCGTCGTAAATTTGATTAGCACCAATCGCGAGTTTAGCGTAAATTTGATCGAGCACGAAGATCTATATAAACTGAATCATAGCTGTAGTATGCGGTACATTCATTCAAGTCACACGCTTACTAGCGGTCACAGCGTTGGCTCTGCTAAATCGCATTTCCGGTGTGCAACGCAATGCAGCTCAGAAGCGTCCTCGTTCTGCTCGTCCTGCTGTGTGCTCTGTTCGATGCCGTCGCTGGTCAGCGCTCGAACGGCTTTCCAACGTACGACGATCATCCCTCGCCGTTTCGGTTTAACAGACCCATCGCTACGAGAAAACCACGGCGTAAGTTCTTCCCAGCACCGCCGGNCATCGTCGGATGAGCAAAGTGGAGTACNAGCGCTTTCCAACGACG]
[+] EMBL BM610453 [CCGGGCTTGACATCAGTGCTGAAAGTGAACATTTTGCTTGAGCTAGTTCGTGATAAACTTTCCTGTTTGCGAAAATGAAATTAGTGAGCAATCTGCTTAAGGCTCTGTGTGC TGTGCTGGCAATGCTGTTACTACTTCCCGTAGAAATTTTACCATCTCCCGTGCCTCAAAATCCAATCCGAACCATCGATGCCATCGACCAAGGCCCGTTCCAAACCGGACATCGAATTCGGCAGCGAGGACATCACAGGAAGTTCTTCCCAGCACCGCCGGCTATTACTGGATAATAGTAACACCTTTGAGGCCAAATATAGTAACCAATAGGAG CCGGA ACCATTTAGTATGT AGAGCCCTTATCGT AAGCGTTGCTGAAACATTCAA CCAATAGTTTCGGC CCG AAAC TCCACCTTTGGGTTGTG TGCGTGTCTGCGAAA TCGATTGAACCATGCTCGTCGTAAATTTGATTAGCACCAATCGCGAGTTTAGCGTAAATTTGATCGAGCACGAAGATCTATATAAACTGAATCATAGCTGTAGTATGCGGTAC ]
[+] EMBL BM620933 [ ccGCTTGACATCAGTGCTGAAAGTGAACATTTTGCTTGAGCTAGTTCGTGATAAACTTTCCTGTTTGCGAAAATGAAATTAGTGAGCAATCTGCTTAAGGCTCTGTGTGC TGTGCTGGCAATGCTGTTACTACTTCCCGTAGAAATTTTACCATCTCCCGTGCCTCAAAATCCAATCCGAACCATCGATGCCATCGACCAAGGCCCGTTCCAAACCGGACATCGAATTCGGCAGCGAGGACATCACAGGAAGTTCTTCCCAGCACCGCCGGCTATTACTGGATAATAGTAACACCTTTGAGGCCAAATA ]
[+] EMBL BX624044 [ ATTTTGCTTGAGCTAGTTCGTGATAAACTTTCCTGTTTGCGAAAATGAAAATAGTGAGCAATCTGCTTAAGGCTCTGTGTGC TGTGCTGGCAATGCTGTTACTACTTCCCGTAGAAGTTTTACCATCTCCCGTGCCTCAAAATCCAATCCGAACCATCGATGCCATCGACCAAGGCCCGTTCCAAACCGGACATCGAATTCGGCAGCGAGGACATCACAGGAAGTTCTTCCCAGCACCGCCGGCTATTACTGGATAATAGTAACACCTTTGAGGCCAAATATAGTAACCAATAGGAG CCGGA ACCATTTAGTATGT AGAGCCCTTATCGT AAGCGTTGCTGAAACATTCAA CCAATAGTTTCGGC CCG AAAC TCCACCTTTGGGTTGTG TGCGTGTCTGCGAAA TCGATTGAACCATGCTCGTCGTAAATTTGATTAGCACCAATCGCGAGTTTAGCGTAAATTTGATCGAGCACGAAGATCTATATAAACTGAATCATAGCTGTAGTATGCGGTACATTCATTCAAGTCACACGCTTACTAGCGGTCACAGCGTTGGCTCTGCTAAATCGCATTTCCGGTGTGCAACGCAATGCAGTTCAGAAGCGTCCTCGTTCTGCTCGTCCTGCTGTGTGCTCTGTTCGATGCCGTCGCTGGTCAGCGCTCGAACGGCTTTCCAACGTACGACGATCATCCCTCGCCGTTTCGGTTTAACAGACCCATCGCTACGAGAAAACCACGGCGTAAGTTCTTCCCAGCACCGCCGGNCATCGTCGGATGAGCAAAGTGGAGTACNAGCGCTTTCCAACGACG]
[+] EMBL BX621882 [ TTGCTTGAGCTAGTTCGTGATAAACTTTCCTGTTTGCGAAAATGAAAATAGTGAGCAATCTGCTTAAGGCTCTGTGTGC TGTGCTGGCAATGCTGTTACTACTTCCCGTAGAAGTTTTACCATCTCCCGTGCCTCAAAATCCAATCCGAACCATCGATGCCATCGACCAAGGCCCGTTCCAAACCGGACATCGAATTCGGCAGCGAGGACATCACAGGAAGTTCTTCCCAGCACCGCCGGCTATTACTGGATAATAGTAACACCTTTGAGGCCAAATATAGTAACCAATAGGAG CCGGA ACCATTTAGTATGT AGAGCCCTTATCGT AAACGTTGCTGAAACATTCAA CCAATAGTTTCGGC CCG AAAC TCCACCTTTGGGTTGTG TGCGTGTCTGCGAAA TCGATTGAACCATGCTCGTCGTAAATTTGATTAGCACCAATCGCGAGTTTAGCGTAAATTTGATCGAGCACGAAGATCTATATAAACTGAATCATAGCTGTAGTATGCGGTACATTCATTCAAGTCACACGCTTACTAGCGGTCACAGAGTTGGCTCTGCTAAATCGCATTTCCGGTGTGCAACGCAATGCAGCTAAGAAGTGTCCTCGTTCTGCTGGTCCTGCTGTGCGCCCTGNTCGATGCCGTCGCTGGTCAGCGCTCGAACGGNTTCCCAACGTACGACGATCATCCC ]
[+] EMBL BX626768 [ TTTCCTG TTGCGAAAATGAAAATAGTGAGGAATCTGCTTAAAGCTCTGTGTGCTGTTGTGCTGGCAATGCTGTTACTACTTCCCGTAGAAGTTTTACCGTCTCCCGTGCCACAAAATCCAATCCGAACCATCGATGCCATCGACCAAGGCCCGTTCCAAACCGGACATCGAATTCGGCAGCGAGGACATCACAGGAAGTTCTTCCCAGCACCGCCGGCTATTACTGGATAATAGTAACACCTTTGAGGCCAAATATAGTAACCAATAGGAG CCGGA ACCATTTAGTATGT AGAGCCCTTATCGT AAGCGTTGCTGAAACATTCAA CCAATAGTTTCGGC CCG AAAC TCCACCTTTGGGTTGTG TGCGTGTCTGCGAAA TCGATTGAACCATGCTCGTCGTAAATTTGATTAGCACCAATCGCGAGTTTAGCGTAAATTTGATCGAGCACGAAGATCTATATAAACTGAATCATAGCTGTAGTATGCGGTACATTCATTCAAGTCACACGCTTACTAGCGGTCACAGCGTTGGCTCTGCTAAATCGCATTTCCGGTGTGCAACGCAATGCAGCTCAGAAGCGTCCTCGTTCTGCTCGTCCTGCTGTGTGCTCTGTTCGATGCCGTCGCTGGTCAGCGCTCGAACGGCTNTCCAACGTACGACGATCA ]
[+] EMBL BX619634 [ TTACTACTTCCCGTAGAAG TTNNCCATCTCCCGTGCCTCAAAATCCAATCCGAACCATCGATGCCATCGACCAAGGCCCGTTCCAAACCGGACATCGAATTCGGCAGCGAGGACATCACAGGAAGTTCTTCCCAGCACCGCCGGCTATTACTGGATAATAGTAACACCTTTGAGGCCAAATATAGTAACCAATAGGAGCCCGGACACCATTTAGTATGTAAGAGCCCTTATCGTAAACCGTTGCTGAAACATNCAACCCAANNGTTTCGGCNCCGNAAACCTTCCACCTTTGGGTTGTGTTGCGTGTCTGCCAAAAATTCGATTGAACCATGC CTTCGT ]
consensusID : consensus_7336#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 804 fasta sequence
[CAGAATCCCCCGAGGTTAAAGTGAACATTTTGCTTGAGCTAGTTCGTGATAAACTTTCCTGTTTGCGAAAATGAAAATAGTGAGCAATCTGCTTAAGGCTCTGTGTGCTGTGCTGGCAATGCTGTTACTACTTCCCGTAGAAGTTTTACCATCTCCCGTGCCTCAAAATCCAATCCTGAACCATCGATGCCATCTGACCAAGGCCCGTTCCAAACCGGACATCGAATTCGGCAGCGAGGACATCACAGGAAGTTCTTCCCAGCACCGCGGCTATTACTTGGATAATAGTAACACCTTTGAGGCCAAATATAAGTAACCAATAGGAGCCGGAACCATTTAGTATGTAGAGCCCTTATCGTAAACGTTGCTGAAACATTCAAGCCAATAGTTTACGGCCGAAAATCCACTTATGGGTTGTGTAGCGTGTCTGCGCAAATCGNATTGAACCATGCTCGTCGTACACTTCTGATTAGCACACAATCGCGAGTTCAGCGTACACTTCTGNGTCGANCCACGCANNATCTATATANNNCNGACATCATAGCTGTACGNATGCGCGNACACTCACTTCAAGTCACACGCTCTACTCAGCGGTCACAGNAAGTAGGCCTCCTGCCTCAAATCCGCCATACACCCGGGATAGTAGCAACGCCACAATNGCCACCTACCAAGAAAAGCGGNCCCATCCGCACCTGCTNCCGTCNCCTTGCGCGGNGTACCACTGGAGACGAACGCCGCCGNCGTGGGCCAACCGCNCCGCAACGGNNCACCCCAACGTAACGCNACNACCANACACCCACGCCC]
[+] EMBL AL695457 [CAGAATCCCCCGAGGTTAAAGTGAACATTTTGCTTGAGCTAGTTCGTGATAAACTTTCCTGTTTGCGAAAATGAAAATAGTGAGCAATCTGCTTAAGGCTCTGTGTGCTGTGCTGGCAATGCTGTTACTACTTCCCGTAGAAGTTTTACCATCTCCCGTGCCTCAAAATCCAATCCTGAACCATCGATGCCATCTGACCAAGGCCCGTTCCAAACCGGACATCGAATTCGGCAGCGAGGACATCACAGGAAGTTCTTCCCAGCACCGCGGCTATTACTTGGATAATAGTAACACCTTTGAGGCCAAATATAAGTAACCAATAGGAGCCGGAACCATTTAGTATGTAGAGCCCTTATCGTAAACGTTGCTGAAACATTCAAGCCAATAGTTTACGGCCGAAAATCCACTTATGGGTTGTGTAGCGTGTCTGCGCAAATCGNATTGAACCATGCTCGTCGTACACTTCTGATTAGCACACAATCGCGAGTTCAGCGTACACTTCTGNGTCGANCCACGCANNATCTATATANNNCNGACATCATAGCTGTACGNATGCGCGNACACTCACTTCAAGTCACACGCTCTACTCAGCGGTCACAGNAAGTAGGCCTCCTGCCTCAAATCCGCCATACACCCGGGATAGTAGCAACGCCACAATNGCCACCTACCAAGAAAAGCGGNCCCATCCGCACCTGCTNCCGTCNCCTTGCGCGGNGTACCACTGGAGACGAACGCCGCCGNCGTGGGCCAACCGCNCCGCAACGGNNCACCCCAACGTAACGCNACNACCANACACCCACGCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7336#0 CCGGGCTTGACATCAGTGCTGAAAGTGAACATTTTGCTTGAGCTAGTTCGTGATAAACTT 60
consensus_7336#1 -CAGAAT---CCCCCGAGGTTAAAGTGAACATTTTGCTTGAGCTAGTTCGTGATAAACTT 56
* * * * * * * * ***************************************
consensus_7336#0 TCCTGTTTGCGAAAATGAAAATAGTGAGCAATCTGCTTAAGGCTCTGTGTGCTGTGCTGG 120
consensus_7336#1 TCCTGTTTGCGAAAATGAAAATAGTGAGCAATCTGCTTAAGGCTCTGTGTGCTGTGCTGG 116
************************************************************
consensus_7336#0 CAATGCTGTTACTACTTCCCGTAGAAGTTTTACCATCTCCCGTGCCTCAAAATCCAATCC 180
consensus_7336#1 CAATGCTGTTACTACTTCCCGTAGAAGTTTTACCATCTCCCGTGCCTCAAAATCCAATCC 176
************************************************************
consensus_7336#0 -GAACCATCGATGCCATC-GACCAAGGCCCGTTCCAAACCGGACATCGAATTCGGCAGCG 238
consensus_7336#1 TGAACCATCGATGCCATCTGACCAAGGCCCGTTCCAAACCGGACATCGAATTCGGCAGCG 236
***************** *****************************************
consensus_7336#0 AGGACATCACAGGAAGTTCTTCCCAGCACCGCCGGCTATTACT-GGATAATAGTAACACC 297
consensus_7336#1 AGGACATCACAGGAAGTTCTTCCCAGCACCGC-GGCTATTACTTGGATAATAGTAACACC 295
******************************** ********** ****************
consensus_7336#0 TTTGAGGCCAAATATA-GTAACCAATAGGAGCCGGAACCATTTAGTATGTAGAGCCCTTA 356
consensus_7336#1 TTTGAGGCCAAATATAAGTAACCAATAGGAGCCGGAACCATTTAGTATGTAGAGCCCTTA 355
**************** *******************************************
consensus_7336#0 TCGTAAGCGTTGCTGAAACATTCAA-CCAATAGTTTCGGCCCGAAACTCCACCTTTGGGT 415
consensus_7336#1 TCGTAAACGTTGCTGAAACATTCAAGCCAATAGTTTACGGCCGAAAATCCACTTATGGGT 415
****** ****************** ********** * ****** ***** * *****
consensus_7336#0 TGTGT-GCGTGTCTGCG-AAATCGA-TTGAACCATGCTCGTCGTAAATTT--GATTAGCA 470
consensus_7336#1 TGTGTAGCGTGTCTGCGCAAATCGNATTGAACCATGCTCGTCGTACACTTCTGATTAGCA 475
***** *********** ****** ******************* * ** ********
consensus_7336#0 C-CAATCGCGAGTTTAGCGTAAATTT---GATCGAGC-ACG-AAGATCTATATAAACTGA 524
consensus_7336#1 CACAATCGCGAGTTCAGCGTACACTTCTGNGTCGANCCACGCANNATCTATATANNNCNG 535
* ************ ****** * ** **** * *** * *********
consensus_7336#0 A--TCATAGCTGTA-GTATGCG-GTACATTCA-TTCAAGTCACACGCT-TACT-AGCGGT 577
consensus_7336#1 ACATCATAGCTGTACGNATGCGCGNACACTCACTTCAAGTCACACGCTCTACTCAGCGGT 595
* *********** * ***** * *** *** *************** **** ******
consensus_7336#0 CACAGCGT-TGGCTCTGCTAAATCGCATTTCCGGTGTGCAACGCAATGCAGCTCAGAAGC 636
consensus_7336#1 CACAGNAAGTAGGCCTCCTGCCTCAAAT--CCGCCATACA-CCCGGGATAG--TAGCAAC 650
***** * * ** ** ** ** *** * ** * * ** ** * *
consensus_7336#0 GTCCTCGTT-CTGCTCGTCCTGCTGTGTGCTCTGTTCGATGCCGTCGCTGGTCAGCGCTC 695
consensus_7336#1 GCCACAATNGCCACCTACCAAGAAAAGCGGNCCCATCCGCACCTGCTNCCGTCNC--CTT 708
* * * * * * * * * * ** ** * *** **
consensus_7336#0 GAACGGCTTTCCAACGTACGACGATCATCCCTCGCCGTTTCGGTTTAACAGACCCATCGC 755
consensus_7336#1 GCGCGGNGTACCACTGGA-GACGAACGCC----GCCGNCGTGGGCCAACCG---CNCCGC 760
* *** * *** * * ***** * * **** ** *** * * ***
consensus_7336#0 TACGAGAAAACCACGGCGTAAGTTCTTCCCAGCACCGCCGGNCATCGTCGGATGAGCAAA 815
consensus_7336#1 AACG-GNNCACCCCAACGTAACGCNACNACCANACACCCACGCCC--------------- 804
*** * *** * ***** * ** ** *
consensus_7336#0 GTGGAGTACNAGCGCTTTCCAACGACG 842
consensus_7336#1 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||