These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7346#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 686 fasta sequence [ACCAGAAAACAGGAACAAAAACGCCTAAATG-A-AAAAGTTTGTAAGGATGGAATATTAGGCGCCGAGAAGAGCCGTTTTAGAGTATCCATGTTGCTGCTGTTCTTGTATTTGGATAATTGTTACCATCTCGACAAAATATTAGCAATTGGTACTAGATCTTAGCTGGAACCGATCTCTTAGAATTCCATTGCGCAGAGTTATTGCTGCTTTCGGTTATGGCGTAGATTGAGAACGTTTCCGAAAAGATTTGTAAAACAAATAAATCAAAACAATTTAATCA-AATCGAACATTTTACAGTTGAAAAGAATTGGAATATCAGAAAGTGTACATGACA-CTTAT-GGCT-CTTCAACGGACAATTTT-AATCTTTGCCGTTTTTCACCCATTGGTATAATATAAC-TCCTTTGAGTTTATGTAGCGTATTACTTTTGCCACGAGCGTTAAATAGCCAGCATTTTAGCAGTTTGAAGTGTTGTTTCCTCCATAGCATACGATAAAAGCTTTGAAAATTAGTGAAGAAACAAAAAAGCAACACGTCTGCACATATTTATTGAAAAAAATAACGACGAAAACAAAAACAACTGCAACAAGTGTGTGATCATTTAATGTTAATTTACTGCTAAAAGTGGAGTATTGCTGAGAATGAAGCAAAGACGTAAGTAACGTATTTATTTCTAACAAAAATGAAC] [+] EMBL BX612783 [ACCAGAAAACAGGAACAAAAACGCCTAAATG A AAAAGTTTGTAAGGATGGAATATTAGGCGCCGAGAAGAGCCGTTTTAGAGTATCCATGTTGCTGCTGTTCTTGTATTTGGATAATTGTTACCATCTCGACAAAATATTAGCAATTGGTACTAGATCTTAGCTGGAACCGATCTCTTAGAATTCCATTGCGCAGAGTTATTGCTGCTTTCGGTTATGGCGTAGATTGAGAACGTTTCCGAAAAGATTTGTAAAACAAATAAATCAAAACAATTTAATCA AATCGAACATTTTACAGTTGAAAAGAATTGGAATATCAGAAAGTGTACATGACA CTTAT GGCT CTTCAACGGACAATTTT AATCTTTGCCGTTTTTCACCCATTGGTATAATATAAC TCCTTTGAGTTTATGTAGCGTATTACTTTTGCCACGAGCGTTAAATAGCCAGCATTTTAGCAGTTTGAAGTGTTGTTTCCTCCATAGCATACGATAAAAGCTTTGAAAATTAGTGAAGAAACAAAAAAGCAACACGTCTGCACATATTTATTGAAAAAAATAACGACGAAAACAAAAACAACTGCAACAAGTGTGTGATCATTTAATGTTAATTTACTGCTAAAAGTGGAGTATTGCTGAGAATGAAGCAAAGACGTAAGTAACGTATTTATTTCTAACAAAAATGAAC] [+] EMBL BX619705 [ AACAGGAACAAAAACGCCTAAATGNANAAAAGTTTGTAAGGATGGAATATTAGGCGCCGAGAAGAGCCGTTTTAGAGTATCCATGTTGCTGCTGTTCTTGTATTTGGATAATTGTTACCATCTCGACAAAATATTAGCAATTGGTACTAGATCTTAGCTGGAACCGATCTCTTAGAATTCCATTGCGCAGAGTTATTGCTGCTTTCGGTTATGGCGTAAATTGAGAACGTTTCCGAAAAGATTTGTAAAACAAATAAATCAAAACAATTTAATCAGTATCGAACATTTTACAGTTGAAAAGAATTGGAATATCAGAAAGTGTACATGACACCTTATCNGCTCCTTCAACGGACAATTTTAAATCTTTGCCGTTTTTCACCCATTGGTATAATATAACNTNCTTTG ] [-] EMBL CNS08QUT [ GTTGAAAAGAATTGGAATATCAGAAAGTGTACATGACA CTTAT GGCT CTTCAACGGACAATTTT AATCTTTGCCGTTTTTCACCCATTGGTATAATATAAC TCCTTTGAGTTTATGTAGCGTATTACTTTTGCCACGAGCGTTAAATAGCCAGCATTTTAGCAGTTTGAAGTGTTGTTTCCTCCATAGCATACGATAAAAGCTTTGAAAATTAGTGAAGAAACAAAAAAGCAACACGTCTGCACATATTTATTGAAAAAAATAACGACGAAAACAAAAACAACTGCAACAAGTGTGTGATCATTTAATGTTAATTTACTGCTAAAAGTGGAGTATTGCTGAGAATGAAGCAAAGACGTAAGTAACGTATTTt ] consensusID : consensus_7346#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [GATCGCCCCGAGGTTAATCTTCGCCTCAGTCATTCTCTAGGATGCTGACAGTTGTACACAACCTAAAATGCATTTGTTGCCACTAGTTGGTATCTACTTGTATCATGGTATTTGTCTCTTCACCCGTCGATACTACTATCTCCGCCCTTCGTAATTTGGTAAGAATGTGTAACTTAGATGTCTCATAACCAAGANTAACTTCAAATAACTCGGTCATTCTTAATCACACTTGTACATTACNACNGGCCCACGCACCCAANAAAACAAACAAACAAACGCAGAACGTTACAACAGAAGGAAAGCTATCAACAGTTGCTGCACAACCAGAAAACAGGAACAANCAACGCCTAAATGAACAAAGTTTGTAAGGATGGCAATATTAGGCGCCGAGAAGAGCCGTTTTAGAGTATCCATGTTGCTGCTGTTCTTGTATTTGGATAATTGTTACCATCTCGACAAAATATTAGCAATTGGTACTAGATCTTAGCTGGAACCGATCTCTTAGAATTCCATTGCGCAGAGTTATTGCTGCTTTCGGTTATGGCGTAGCATTCGAGCAACGTTCTCCGAACAAGACTTCGTAAAACACACATAANATCAACAACAACTNTTAATCAAATCGAACATTTTACAGNTTCTGCAAACNGCAACTGGACACTNTCAGCAAAAGTGTACATGACACTT] [+] EMBL AL931021 [GATCGCCCCGAGGTTAATCTTCGCCTCAGTCATTCTCTAGGATGCTGACAGTTGTACACAACCTAAAATGCATTTGTTGCCACTAGTTGGTATCTACTTGTATCATGGTATTTGTCTCTTCACCCGTCGATACTACTATCTCCGCCCTTCGTAATTTGGTAAGAATGTGTAACTTAGATGTCTCATAACCAAGANTAACTTCAAATAACTCGGTCATTCTTAATCACACTTGTACATTACNACNGGCCCACGCACCCAANAAAACAAACAAACAAACGCAGAACGTTACAACAGAAGGAAAGCTATCAACAGTTGCTGCACAACCAGAAAACAGGAACAANCAACGCCTAAATGAACAAAGTTTGTAAGGATGGCAATATTAGGCGCCGAGAAGAGCCGTTTTAGAGTATCCATGTTGCTGCTGTTCTTGTATTTGGATAATTGTTACCATCTCGACAAAATATTAGCAATTGGTACTAGATCTTAGCTGGAACCGATCTCTTAGAATTCCATTGCGCAGAGTTATTGCTGCTTTCGGTTATGGCGTAGCATTCGAGCAACGTTCTCCGAACAAGACTTCGTAAAACACACATAANATCAACAACAACTNTTAATCAAATCGAACATTTTACAGNTTCTGCAAACNGCAACTGGACACTNTCAGCAAAAGTGTACATGACACTT] consensusID : consensus_7346#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGAATATCAGAAAGTGTACATGACACTTATGGCTCTTCAACGGACAATTTTAATCTTTGCCGTTTTTCACCCATTGGTATAATATAACTCCTTTGAGTTTATGTAGCGTATTACTTTTGCCACGAGCGTTAAATAGCCAGCATTTTAGCAGTTTGAAGTGTTGTTTCCTCCATAGCATACGATAAAAGCTTTGAAAATTAGTGAAGAAACAAAAAAGCAACACGTCTGCACATATTTATTGAAAAAAATAACGACGAAAACAAAAACAACTGCAACAAGTGTGTGATCATTTAATGTTAATTTACTGCTAAAAGTGGAGTATTGCTGAGAATGAAGCAAAGACGTAAGTAACGTATTTATTTCTAACAAAAATGAACGACGATAAGCAAAAAGAAAACAAAAAAAAGAAGCGAAACAAGAATCAGTGGAGAAGGAAGAGTGTGTTGTGTAAACGAATTAGAAAAGAATACCCGTGTCCCAGGGTAGCAGGGAAATGAAATTGAGAGCATAAAAT] [+] EMBL BM639142 [CCGCCCACGCGTCCGCCCACGCGTCCGGGAATATCAGAAAGTGTACATGACACTTATGGCTCTTCAACGGACAATTTTAATCTTTGCCGTTTTTCACCCATTGGTATAATATAACTCCTTTGAGTTTATGTAGCGTATTACTTTTGCCACGAGCGTTAAATAGCCAGCATTTTAGCAGTTTGAAGTGTTGTTTCCTCCATAGCATACGATAAAAGCTTTGAAAATTAGTGAAGAAACAAAAAAGCAACACGTCTGCACATATTTATTGAAAAAAATAACGACGAAAACAAAAACAACTGCAACAAGTGTGTGATCATTTAATGTTAATTTACTGCTAAAAGTGGAGTATTGCTGAGAATGAAGCAAAGACGTAAGTAACGTATTTATTTCTAACAAAAATGAACGACGATAAGCAAAAAGAAAACAAAAAAAAGAAGCGAAACAAGAATCAGTGGAGAAGGAAGAGTGTGTTGTGTAAACGAATTAGAAAAGAATACCCGTGTCCCAGGGTAGCAGGGAAATGAAATTGAGAGCATAAAAT] consensusID : consensus_7346#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 324 fasta sequence [TAATTTCTAATTGACATCTTTTGCTCTCGCATACCAGATACTGAAAAAAAAACAGTGATGTCAAATCTTCGCCTCAGTCATTCTTAGGATGCTGACAGTTGTACACAACCTAAAATGCATTTGTTGCCACTAGTTGGTATCTACTTTGTATNCATTGGTATTTGTCTCTTCACCCGTCGATACTCTTCTCCGCCCTTCGTAATTTGGAAAGAATGTGTAATTAGATGTCTCATAGCCAAGAATAATTAAATAATCGGTCATTTTAATCACACTTGTACATTAAAAGGAAAAGAAAAAAAAAACAAACAAACNAACTCNGAACGT] [+] EMBL BX619320 [TAATTTCTAATTGACATCTTTTGCTCTCGCATACCAGATACTGAAAAAAAAACAGTGATGTCAAATCTTCGCCTCAGTCATTCTTAGGATGCTGACAGTTGTACACAACCTAAAATGCATTTGTTGCCACTAGTTGGTATCTACTTTGTATNCATTGGTATTTGTCTCTTCACCCGTCGATACTCTTCTCCGCCCTTCGTAATTTGGAAAGAATGTGTAATTAGATGTCTCATAGCCAAGAATAATTAAATAATCGGTCATTTTAATCACACTTGTACATTAAAAGGAAAAGAAAAAAAAAACAAACAAACNAACTCNGAACGT] [+] EMBL CNS08QUS [ cttAAAAAAACAGTGATG CAAATCTTCGCCTCAGTCATTCTTAGGATGCTGACAGTTGTATACAACCTAAAATGCATTTGTTGCCACTAGTTGGTATCTACTTTGTAT CATTGGTATTTGTCTCTTCACCCGTCGATACTCTTCTCCGCCCTTCGTAATTTGGAAAGAATGTGTAATTAGATGTCTCATAGCCAAGAATAATTAAATAATCGGTCATTTTAATCACACTTGTACATT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7346#1 ------------------------------------------------------------ consensus_7346#3 ------------------------------------------------------------ consensus_7346#0 ACCAGAAAACAGGAACAAAAACGCCTAAATGAAAAAGTTTGTAAGGATGGAATATTAGGC 60 consensus_7346#2 ------------------------------------------------------------ consensus_7346#1 ------------------------------------------------------------ consensus_7346#3 ------------------------------------------------------------ consensus_7346#0 GCCGAGAAGAGCCGTTTTAGAGTATCCATGTTGCTGCTGTTCTTGTATTTGGATAATTGT 120 consensus_7346#2 ------------------------------------------------------------ consensus_7346#1 ------------------------------------------------------------ consensus_7346#3 ------------------------------------------------------------ consensus_7346#0 TACCATCTCGACAAAATATTAGCAATTGGTACTAGATCTTAGCTGGAACCGATCTCTTAG 180 consensus_7346#2 ------------------------------------------------------------ consensus_7346#1 ------------------------------------------------------------ consensus_7346#3 -------------------------TAATTTCTAATTGACATCTTTTGCTCTCGCATACC 35 consensus_7346#0 AATTCCATTGCGCAGAGTTATTGCTGCTTTCGGTTATGGCGTAGATTGAGAACGTTTCCG 240 consensus_7346#2 ------------------------------------------------------------ consensus_7346#1 ------------GATCGCCCCGAGGTTAA-TCTTCGCCTCAGTCATTCTCTAGGATGCTG 47 consensus_7346#3 AGATACTGAAAAAAAAACAGTGATGTCAAATCTTCGCCTCAGTCATTCT-TAGGATGCTG 94 consensus_7346#0 AAAAGATTTGTAAAACAAATAAATCAAAACAATTTAATCAAATCGAACATTTTACAGTTG 300 consensus_7346#2 ------------------------------------------CCGCCCACGCGTCCGCCC 18 * * * consensus_7346#1 ACAGTTGTACACAACCTAAAATGCATTTGTTGCCACTAGTTGGTATCTACTT-GTATCA- 105 consensus_7346#3 ACAGTTGTACACAACCTAAAATGCATTTGTTGCCACTAGTTGGTATCTACTTTGTATNCA 154 consensus_7346#0 AAAAGAATTGGAATATCAGAAAGTGTACAT-GACACTTATGGCTCTTCAACGGACAATT- 358 consensus_7346#2 ACGCGTCCGGGAATATCAGAAAGTGTACAT-GACACTTATGGCTCTTCAACGGACAATT- 76 * * * ** * * * * **** * * * * * * consensus_7346#1 -TGGTATTTGTC--TCTTCACCCGTCGATACTAC-TATCTCCGCCCTTCGTAATTTGGTA 161 consensus_7346#3 TTGGTATTTGTC--TCTTCACCCGTCGATACTCT-T--CTCCGCCCTTCGTAATTTGGAA 209 consensus_7346#0 TTAATCTTTGCCGTTTTTCACCCATTGGTATAATATAACTCCTTTGAGTTTATGTAGCGT 418 consensus_7346#2 TTAATCTTTGCCGTTTTTCACCCATTGGTATAATATAACTCCTTTGAGTTTATGTAGCGT 136 * * **** * * ******* * * ** * **** ** * * consensus_7346#1 AGAATGTGTAACTTAGATGTCTCATAACCAAGANTAACTTCAAATAACTCGGTCATTCTT 221 consensus_7346#3 AGAATGTGTAA-TTAGATGTCTCATAGCCAAGAATAATT--AAATAA-TCGGTCATT-TT 264 consensus_7346#0 ATTACTTTTGCCACGAGCGTTAAATAGCCA-GCATTTTAGCAGTTTGAAGTGTTGTT-TC 476 consensus_7346#2 ATTACTTTTGCCACGAGCGTTAAATAGCCA-GCATTTTAGCAGTTTGAAGTGTTGTT-TC 194 * * * * ** *** *** * * * * ** ** * consensus_7346#1 AATCACACTTGTACATTACNACNGGCCCACGCACCCAANAAAACAAACAAACAA-AC-GC 279 consensus_7346#3 AATCACACTTGTACATTAAAAGGAAAAGAAA-----AAAAAAACAAACAAACNA-AC-TC 317 consensus_7346#0 CTCCATAGC-ATACGATAAAAGCTTTGAAAATTAGTGAAGAAACAAAAAAGCAACACGTC 535 consensus_7346#2 CTCCATAGC-ATACGATAAAAGCTTTGAAAATTAGTGAAGAAACAAAAAAGCAACACGTC 253 ** * *** ** * * * ******* ** * * ** * consensus_7346#1 AGAACGTTACAACAGAAGGAAAGCTATCAACAGTTGCTGCACAACCAGAAAACAGGAACA 339 consensus_7346#3 NGAACGT----------------------------------------------------- 324 consensus_7346#0 TGCACATATTTATTGAAAAAAA--TAACGACGAAAACAAAAACAACTGCAACAAGTGTGT 593 consensus_7346#2 TGCACATATTTATTGAAAAAAA--TAACGACGAAAACAAAAACAACTGCAACAAGTGTGT 311 * ** * consensus_7346#1 ANCAACGCCTAAATGAACAAAGTTTGTAAGGATGGCAATATTAGGCGCCGAGAAGAGCCG 399 consensus_7346#3 ------------------------------------------------------------ consensus_7346#0 GATCATTTAATGTTAATTTACTGCTAAAAGTGGAGTATTGCTGAGAATGAAGCAAAGACG 653 consensus_7346#2 GATCATTTAATGTTAATTTACTGCTAAAAGTGGAGTATTGCTGAGAATGAAGCAAAGACG 371 consensus_7346#1 TTTTAGAGTATCCATGTTGCTGCTGTTCTTGTATTTGGATAATTGTTACCATCTCGACAA 459 consensus_7346#3 ------------------------------------------------------------ consensus_7346#0 TAA-GTAACGTATTTATTTCTAACAAAAATGAAC-------------------------- 686 consensus_7346#2 TAA-GTAACGTATTTATTTCTAACAAAAATGAACGACGATAAGCAAAAAGAAAACAAAAA 430 consensus_7346#1 AATATTAGCAATTGGTACTAGATCTTAGCTGGAACCGATCTCTTAGAATTCCATTGCGCA 519 consensus_7346#3 ------------------------------------------------------------ consensus_7346#0 ------------------------------------------------------------ consensus_7346#2 AAAGAAGCGAAACAAGAATCAGTGGAGAAGGAAGAGTGTGTTGTGTAAACGAATTAGAAA 490 consensus_7346#1 GAGTTATTGCTGCTTTCGGTTATGGCGTAGCATTCGAGCAACGTTCTCCGAACAAGACTT 579 consensus_7346#3 ------------------------------------------------------------ consensus_7346#0 ------------------------------------------------------------ consensus_7346#2 AGAATACCCGTGTCCCAGGGTAGCAGGGAAATGAAATTGAGAGCATAAAAT--------- 541 consensus_7346#1 CGTAAAACACACATAANATCAACAACAACTNTTAATCAAATCGAACATTTTACAGNTTCT 639 consensus_7346#3 ------------------------------------------------------------ consensus_7346#0 ------------------------------------------------------------ consensus_7346#2 ------------------------------------------------------------ consensus_7346#1 GCAAACNGCAACTGGACACTNTCAGCAAAAGTGTACATGACACTT 684 consensus_7346#3 --------------------------------------------- consensus_7346#0 --------------------------------------------- consensus_7346#2 --------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||