These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7349#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1060 fasta sequence [CCGGTTGTTCAGCATTAAATAAACAGTACGCTTGCAGTAGCAGCAGGATGAGCGGTGAACAAACGTACTGTTTATTTAATGTTGTTCAGCATTTGCAAAACTACGCTACAACACACAGACACCTTCGGTTCGGATTCCGAAAAAGGTAGTTCACTGTTTCCAAATGAATTACGCATATAAATTTACATGTACCGGCTTGGCCACATACCTACAACTCAC---------TAACTAGAACATATTACGCGATAGGAGGAGAAAAAAACAAGTTGTAATCAATAATTAGAATTTCGACCACGGTTTC---TG-TTGTAATCGTTGATGTGATGGGTAGCGGAGGAAAGCCTTTGATAGTTAACAAAACCAGAAACATACACACCTTATATATACACCGTAGCAACCGTAGCATTAGACAACCACACATTTAACCTGTCATTTTCATTCAAACGGAAACGAAACGGTTGAATTATAGAGAGAGCTTTAGCCGTCGGAGCATCATACTCAGCAGCAACTAATTAATATATCTTTATATATGCATATACCTTTACACATATATACGGAATCGTTACACGCTCCTACGGGCAGACAAGGAGCGGGTGGCTATATAATGCAAACGTTCACTGTATTTAACAACAATATTAAAGTTAGACGAAATTTTGAAGCTATAAAGCATGGTGAAGTGAGTGACGTGATGATAGACAAGCGCGCCCTCTCTCTATGCTAATCTGCATAGTGTAGTGAACATATCATTTGCAAGTTGAGAGTGCATGTGTGTGCATGTGTGTGTATCATCGTTCGGTGTGACGATTGAGTTTTTGTTTTGTGAGCATCCCGTTCTTGATGCTATATTAAAGATTGAACTACTAACACATTTATACTAAGGTATGCAATGAAGACGGAGATCGTTAACGAAGTAGTTTATGAAAACGCTAATAAGAACACTATTAAAGCCCCACGATCAAGGCATCAGGGGAAGAGTAGAGACAGATGATGTTCGGTAATTGCATATCGGCGGGCTTATAACATTTAATATTGGTGCCGAAGAAATGCGGGAATTGTTGTTAGGCTGATA] [+] EMBL BM593790 [CCGGTTGTTCAGCATTAAATAAACAGTACGCTTGCAGTAGCAGCAGGATGAGCGGTGAACAAACGTACTGTTTATTTAATGTTGTTCAGCATTTGCAAAACTACGCTACAACACACAGACACCTTCGGTTCGGATTCCGAAAAAGGTAGTTCACTGTTTCCAAATGAATTACGCATATAAATTTACATGTACCGGCTTGGCCACATACCTACAACTCAC TAACTAGAACATATTACGCGATAGGAGGAGAAAAAAACAAGTTGTAATCAATAATTAGAATTTCGACCACGGTTTC CG TTGTAATCGTTGATGTGATGGGTAGCGGAGGAAAGCCTTTGATAGTTAACAAAACCAGAAACATACACACCTTATATATACACCGTAGCAACCGTAGCATTAGACAACCACACATTTAACCTGTCATGTTCATTCAAACGGAAACGAAACGGTTGAATTATAGAGAGAGCTTTAGCCGTCGGAGCATCATACTCAGCAGCAACCAATTAATATATCTTTATATATGCATATACCTTTACACATATATACGGAATCGTTACACGCTCCTACGGGCAGACAAGGAGCGGGTGGCTATATAATGCAAACGTTCACTGTATTTAACAACAATATTAAAGTTAGACGAAATTTTGAAGCTATAAAGCATGGTGAAGTGAGTGACGTGATGATAGAC ] [-] EMBL BX627401 [ AGACACTTTCGGTTNGGATTCCGAAAAAGGTAGTTCACTGTTTCCAAATGAATTACGCATATAAATTTACATGTACCGGCTTGGCCACATACCTACAACTCACTAACACGTATAACTAGAACATATTACGCGATAGGAGGAGAAAAAAACAAGTTGTAATCAATAATTAGAATTTCGATCACGGTTTCCGTTGTTTGTAATCGTTGATGTGATGGGTAGCGGAGGAAAGCCTTTGATAGTTAACAAAACCAGAAACATACACACCTTATATATACACCGTAGCAACCGTAGCATTAGACAACCACACATTTAACCTGTCATTTTCATTCAAACGGAAACGAAACGGTTGAATTATAGAGAGAGCTTTAGCCGTCGGAGCATCATACTCAGCAGCAACTAATTAATATATCTTTATATATGCATATACCTa ] [+] EMBL BX607672 [ GACCACGGTTTC TG TTGTAATCGTTGATGTGATGGGTAGCGGAGGAAAGCCTTTGATAGTTAACAAAACCAGAAACATACACACCTTATATATACACCGTAGCAACCGTAGCATTAGACAACCACACATTTAACCTGTCATTTTCATTCAAACGGAAACGAAACGGTTGAATTATAGAGAGAGCTTTAGCCGTCGGAGCATCATACTCAGCAGCAACTAATTAATATATCTTTATATATGCATATACCTTTACACATATATACGGAACCGTTACACGCTCCTACGGGCAGACAAGGAGCGGGTGGCTATATAATGCAAACGTTCACTGTATTTAACAACAATATTAAAGTTAGACGAAATTTTGAAGCTAT AAGCATGGTGAAGTGAGTGACGTGATGATAGACAAGCGCGCCCTCTCTCTATGCTAATCTGCATAGTGTAGTGAACATATCATTTGCAAGTTGAGAGTGCATGTGTGTGCATGTGTGTGTATCATCGTTCGGTGTGACGATTGAGTTTTTGTTTTGTGAGCATCCCGTTCTTGATGCTATATTAAAGATTGAACTACTAACACATTTATACTAAGGTATGCAATGAAGACGGAGATCGTTAACGAAGTAGTTTATGAAAACGCTAATAAGAACACTATTAAAGCCCCACGATCAAGGCATCAGGGGAAGAGTAGAGACAGATGATGTTCGGTAATTGCATATCGGCGGGCTTATAACATTTAATATTGGTGCCGAAGAAATGCGGGAATTGTTGTTAGGCTGATA] consensusID : consensus_7349#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 885 fasta sequence [CCGCTCCAGCCTGCAAAGGAAAAAGACGCCATGAAAAGCCGTGCGAGCAAACCAAGCTCCAAGATAGCGGCACGCTTGCAACACTCAATCACACCGCCACCGCCACTGGCGGCACCGCACCAGCAACCGGTACCGCCGGTGCTGCCATCGAAGGAAATGAAGGAAGCCGCCTGCCAGACGCTCAGCACGGGCGATATTGTGATTACGAAGATATTTTTCAAGGAGGAGCAAAACAAGAAGGCTCAACCGGACAAGCCGAATGCGGCCTCGCCCGTACCCGGCGAATTGCTCAAAAAGAACGGCACCACTACGGCCGGCGGCGAGATACTGGTGAACGCTTCCAGCCAGCAGCAGACCGACGGCGCAAATGGTGTGCACACACACACACTTATGATTTAATAATCGAACGAAGGACGAAGCAATAATTTATGCGCTAATTTATTCGATCCTAATAGGATAT-GACTT-GGGTGTGTGAGATCACACACACCACAGCATATGTCCTCGGCATATAT-GATCCCGGGGTTTGATAACTATATTTGTCTCCCGCATTACTGATTGACGCGATCGTATCAGGACGTCTGTAGACAGTTGTAGGCAGCTATATTTTTTATCGAATATTTATACCCCCGATAACGAAATTCCCGCGAGTGAGAATGACCACCCTATGCTACGTACCGGAGGAATATTTCGCTCCCTCCCCTANGGTTGTGAGTTTGTGTGCTTTGAGTTGAGTTGATTGTGTTTTGTTAGCTAGCAGGGAAGATAGATCATAAGCAACCTTGGTGGGAATTGAAGACACATCAAAACTGAACACGTTTGNTCACCGCTCATCCTGCTGCTACTGCAAGCGTACTGTTTATTTAATGTTGTTCAGCATTTGCAAAA] [+] EMBL BM575522 [CCGCTCCAGCCTGCAAAGGAAAAAGACGCCATGAAAAGCCGTGCGAGCAAACCAAGCTCCAAGATAGCGGCACGCTTGCAACACTCAATCACACCGCCACCGCCACTGGCGGCACCGCACCAGCAACCGGTACCGCCGGTGCTGCCATCGAAGGAAATGAAGGAAGCCGCCTGCCAGACGCTCAGCACGGGCGATATTGTGATTACGAAGATATTTTTCAAGGAGGAGCAAAACAAGAAGGCTCAACCGGACAAGCCGAATGCGGCCTCGCCCGTACCCGGCGAATTGCTCAAAAAGAACGGCACCACTACGGCCGGCGGCGAGATACTGGTGAACGCTTCCAGCCAGCAGCAGACCGACGGCGCAAATGGTGTGCACACACACACACTTATGATTTAATAATCGAACGAAGGACGAAGCAATAATTTATGCGCTAATTTATTCGATCCTAATAGGATTTGGACTTGGGGTGTGTGAGATCACACACACCACAGCATATGTCCTCGGCATATATGGATCCCGGGGTTTGATAACTATATTTGTCTCCCGCATTACTGATTGACGCGATCGTATCAGGACGTCTGTAGACAGTTGTAGGCAGCTATATTTTTTATCGAATATTTATACCCCCGATAACGAAATTCCCGCGAGTGAGAATGACCAC ] [+] EMBL BX621717 [ CTTGCAACACTCAATCACACCGCCACCGCCACTGGCGGCACCGCACCAGCAACCGGTACCGCCGGTGCTGCCATCGAAGGAAATGAAGGAAGCCGCCTGCCAGACGCTCAGCACGGGCGATATTGTGATTACGAANATATTTTTCAAGGAGGAGCAAAACAAGAAGGCTCAACCGGACAAGCCGAATGCGGCCTCGCCCGTACCCGGCGAATTGCTCAAAAAGAACGGCACCACTACNGCCGGCGGCGAGATACTGGTGAACGCTTCCAGCCAGCAGCAGACCGACGGCGCAAATGGNGTGCACACACACACACTTATGATTTAATAATCGAACGAAGGACGAAGCAATAATTTATGCGCTAATTTATTCGATCCTAATAGGATAT GACTT GGGTGTGTGAGATCACACACACCACAGCATATGTCCTCGGCATATAT GATCCCGGGGTTTGATAACTATATTTGTCTCCCGCATTACTGATTGACGCGATCGTATCAGGACGTCTGTAGACAGTTGTAGGCAGCTATATTTTTTATCGAATATTTATACCCCCGATAACGAAATTCCCGCGAGTGAGAATGACCACCCTATGCTACGTACCGGAGGAATATTTCGCTCCCTCCCCTANGGTTGTGAGTTTGTGTGCTTTGAGTTGAGTTGATTGTGTTTTGTTAGCTAGCAGGGAAGATAGATCATAAGCAACCTTGGTGGGAATTGAAGACACATCAAAACTGAACACGTTTGNTCACCGCTCATCCTGCTGCTACT ] [+] EMBL BM576429 [ ccgGAACGAAGGACGAAGCAATAATTTATGCGCTAATTTATTCGATCCTAATAGGATAT GACTT GGGTGTGTGAGATCACACACACCACAGCATATGTCCTCGGCATATAT GATCCCGGGGTTTGATAACTATATTTGTCTCCCGCATTACTGATTGACGCGATCGTATCAGGACGTCTGTAGACAGTTGTAGGCAGCTATATTTTTTATCGAATATTTATACCCCCGATAACGAAATTCCCGCGAGTGAGAATGACCACCCTAGGCTACGTACCGGAGGAATATTTCGCTCCCTCCCCTAGGTTTGTGAGTTTGTGTGCTTTGAGTTGAGTTGATTGTGTTTTGTTAGCTAGCAGGGAAGATAGATCATAAGCAACCTTGGTGGGAATTGAAGACACATCAAAACTGAACACGTTTGTTCACCGCTCATCCTGCTGCTACTGCAAGCGTACTGTTTATTTAATGTTGTTCAGCATTTGCAAAA] consensusID : consensus_7349#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [AGATCCCGAGGTTAATATTTGTCTCCCGCATTACGGATTGACGCGATCGTATCAGGACGTCTGTAGGCAGCTATATTTTTTATCGAATATTTATACCCCCGATAACGAAATTCCCGCGAGTGAGAATGACCACCCTAGGCTACGTACCGGAGGAATATTTCGCTCCCTCCCCTAGGTTTGTGAGTTTGTGTGCTTTGAGTTGAGTTGATTGTGTTTTGTTAGCTAGCAGGGAAGATAGATCATAAGCAATCTTGGTGGGAATTGAAGACACATCAAAACTGAACACGTTTGTTCACCGCTCATCCTGCTGCTACTGCAAGCGTACTGTTTATTTAATGTTGTTCACGCACTTTGCAAAACTACGCTACAACCCACAGACACCTCTCGCGTCTCGCNCATTCCGCAAACACCNGTACTCTCACTGCTTTCCAAACTGAACTTACGCACTACTAACACTTCTCACACTGTACCGNCTCTGCGCCACATACCTACAACTCACTAACACGTATAACC] [+] EMBL AL931038 [AGATCCCGAGGTTAATATTTGTCTCCCGCATTACGGATTGACGCGATCGTATCAGGACGTCTGTAGGCAGCTATATTTTTTATCGAATATTTATACCCCCGATAACGAAATTCCCGCGAGTGAGAATGACCACCCTAGGCTACGTACCGGAGGAATATTTCGCTCCCTCCCCTAGGTTTGTGAGTTTGTGTGCTTTGAGTTGAGTTGATTGTGTTTTGTTAGCTAGCAGGGAAGATAGATCATAAGCAATCTTGGTGGGAATTGAAGACACATCAAAACTGAACACGTTTGTTCACCGCTCATCCTGCTGCTACTGCAAGCGTACTGTTTATTTAATGTTGTTCACGCACTTTGCAAAACTACGCTACAACCCACAGACACCTCTCGCGTCTCGCNCATTCCGCAAACACCNGTACTCTCACTGCTTTCCAAACTGAACTTACGCACTACTAACACTTCTCACACTGTACCGNCTCTGCGCCACATACCTACAACTCACTAACACGTATAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7349#1 CCGCTCCAGCCTGCAAAGGAAAAAGACGCCATGAAAAGCCGTGCGAGCAAACCAAGCTCC 60 consensus_7349#2 ------------------------------------------------------------ consensus_7349#0 -------------CCGGTTGTTCAGCATTAAATAAACAGTACGCTTGCAGTAGCAGCAGG 47 consensus_7349#1 AAGATAGCGGCACGCTTGCAACACTCAATCACACCGCCACCGCCACTGGCGGCACCGCAC 120 consensus_7349#2 ------------------------------------------------------------ consensus_7349#0 ATGAGCGGTGAACAAACGTACTGTTTATTTA-ATGTTGTTCAGCATTTGCAAAACTACGC 106 consensus_7349#1 CAGCAACCGGTACCGCCGGTGCTGCCATCGAAGGAAATGAAGGAAGCCGCCTGCCAGACG 180 consensus_7349#2 ------------------------------------------------------------ consensus_7349#0 TACAACACACAGACACCTTCGGTTCGGATTCCGAAAAAGGTAGTTCACTGTTTCCAAATG 166 consensus_7349#1 CTCAGCACGGGCGATATTGTGATTACGAAGATATTTTTCAAGGAGGAGCAAAACAAGAAG 240 consensus_7349#2 ------------------------------------------------------------ consensus_7349#0 AATTACGCATATAAATTTACATGTACCGGCTTGGCCACATACCTACAACTCACTAACTAG 226 consensus_7349#1 GCTCAACCGGACAAGCCGAATGCGGCCTCGCCCGTACCCGGCGA-ATTGCTCAAAAAGAA 299 consensus_7349#2 ------------------------------------------------------------ consensus_7349#0 AACATATTACGCGATAGGAGGAGAAAAAAACAAGTTGTAATCAATAATTAGAATTTCGAC 286 consensus_7349#1 CGGCACCACTACGGCCGGCGGCGAGATACTGGTGAACGCTTCCAGCCAGCAGCAGACCGA 359 consensus_7349#2 ------------------------------------------------------------ consensus_7349#0 CACGGTTTCTGTTGTAATCGTTGATGTGATGGGTAGCGGAGGAAAGCCTTTGATAGTTAA 346 consensus_7349#1 CGGCGCAAATGGTGTGCACACACACACACTTATGATTTAATAATCGAACGAAGGACGAAG 419 consensus_7349#2 ------------------------------------------------------------ consensus_7349#0 CAAAACCAGAAACATACACAC-CTTATATATACACCGTAGCAACCGTAGCATTAGACAAC 405 consensus_7349#1 CAATAATTTATGCGCTAATTTATTCGATCCTAATAGGATATGACTTGGGTGTGTGAGATC 479 consensus_7349#2 ------------------------------------------------------------ consensus_7349#0 CACACATTTAACCTGTCATTTTCATTCAAACGGAAACGAAACGGTTGAATTATAGAGAGA 465 consensus_7349#1 ACACACACCACAGCATATGTCCTCGGCATATATGATCCCGGGGTTTGATAACTATATTTG 539 consensus_7349#2 --------------------------------AGATCCCGAGGTTA-------ATATTTG 21 consensus_7349#0 GCTTTAGCCGTCGGAGCATCATACTCAGCAGCAACTAATTAATATATCTTTATATATGCA 525 * * **** consensus_7349#1 TCTCCCGCATTACTGATTGACGCGATCGTATCAGGACGTCTGTAGACAGTTGTAGGCAGC 599 consensus_7349#2 TCTCCCGCATTACGGATTGACGCGATCGTATCAGGACGTCTGTAG----------GCAGC 71 consensus_7349#0 TATACCTTTACACATATATACGGAATCGTTACACGCTCCTACGGGCAGACAAGGAGCGGG 585 * * ** ** ** *** ***** ** * * ** * consensus_7349#1 TATATTTTTTAT-CGAATATTTA-TACCCCCGATAACGAAATTCCCGCGAGTGAGAATGA 657 consensus_7349#2 TATATTTTTTAT-CGAATATTTA-TACCCCCGATAACGAAATTCCCGCGAGTGAGAATGA 129 consensus_7349#0 TGGCTATATAATGCAAACGTTCACTGTATTTAACAACAATATTAAAGTTAGACGAAATTT 645 * * * * ** * ** ** * * * *** * *** * ** *** consensus_7349#1 CCACCCTATGCTACGTACCGGAG-GAATATTTCGCTCCCTCCCCTANGG-TTGTGAGTTT 715 consensus_7349#2 CCACCCTAGGCTACGTACCGGAG-GAATATTTCGCTCCCTCCCCTAGGT-TTGTGAGTTT 187 consensus_7349#0 TGAAGCTATAAAGCATGGTGAAGTGAGTGACGTGATGATAGACAAGCGCGCCCTCTCTCT 705 * *** * * * ** ** * * * * * * * * consensus_7349#1 GTG-TGCTTTGAGTTGAGTTGATTGTGTTTTGTTAGCTAGCAGGGAAGATAGATCATAAG 774 consensus_7349#2 GTG-TGCTTTGAGTTGAGTTGATTGTGTTTTGTTAGCTAGCAGGGAAGATAGATCATAAG 246 consensus_7349#0 ATGCTAATCTGCATAGTGTAGTGAACATATCATTTGCAAGTTGAGAGTGCATGT-GTGTG 764 ** * * ** * * ** * * * ** ** ** * ** * * * * consensus_7349#1 CAACCTTGGTGGGAATTGAAGACACATCAAAACTGAACACGTTTGNTCACCGCTCATCCT 834 consensus_7349#2 CAATCTTGGTGGGAATTGAAGACACATCAAAACTGAACACGTTTGTTCACCGCTCATCCT 306 consensus_7349#0 CATGTGTGTGTATCATCGTTCG-GTGTGACGATTGAGT--TTTTGTTTTGTGAGCATCCC 821 ** ** ** * * * * *** **** * * ***** consensus_7349#1 GCTGCTACTGCAAGCGTACTGTTTATTTAATGTTGTTCA-GCA-TT-TGCAAAA------ 885 consensus_7349#2 GCTGCTACTGCAAGCGTACTGTTTATTTAATGTTGTTCACGCACTT-TGCAAAACTACGC 365 consensus_7349#0 GTTCTTGATGC---TATATTAAAGATTGAAC--TACTAACACATTTATACTAAGGTATGC 876 * * * *** ** * *** ** * * * ** ** * * ** consensus_7349#1 ------------------------------------------------------------ consensus_7349#2 TACAACCCACAGACACCTCTCGCGTCTCGCNCATTCCGCAAACACCNGTACTCTCACTGC 425 consensus_7349#0 AATGAAG-ACGGAGATCGTTAACGA--AGTAGTTTATGAAAACGCTAATAAGAACACTAT 933 consensus_7349#1 ------------------------------------------------------------ consensus_7349#2 TTTCCAAACTGAACTTACGCACTACTAACACTTCTCACACTGTACCGNCTCTGCG-CCAC 484 consensus_7349#0 TAAAGCCCCACGATCAAGGCATCAGGGGAAGAGTAGAGACAGATGATGTTCGGTAATTGC 993 consensus_7349#1 ------------------------------------------------------------ consensus_7349#2 ATACCTACAACTCACTAACACGTATAACC------------------------------- 513 consensus_7349#0 ATATCGGCGGGCTTATAACATTTAATATTGGTGCCGAAGAAATGCGGGAATTGTTGTTAG 1053 consensus_7349#1 ------- consensus_7349#2 ------- consensus_7349#0 GCTGATA 1060 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||