These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1846 fasta sequence [CCGGTGCTGCATGGCGGTGAGAGCGAGCGTGTGTGGGAAAGCGAGCGATTGGAAAGGACACAAACACACACACACACACACGCACATACGCTTTTAAAAGGTAGCATAAATAAGTGAAAACCGAACCAATCCGCACGGCCAACACGGATCACACGGAGTTAAAGTTTCAGCAGTCAGAGTCATGAGAGCTTTGGCAACCGATTTCAGTTCAGTTGCTGGAGGTTTGTTGGATTTGTGGGGAAAGGGGAGAGGGGAGGAATACTTCATCATGATTTATAAAGGTAGTGGCAAACAGGGACTAATCCTTCATGGCAGCGCCCCAAAACCAGCGTCGGCAAAGCTGGTGCGTGTGCGGGAAATTTCCCCGATTTTGCTACATATTCGCAGATAGCAGGATGGAGCAAAGTGAGTGATACGAGTTATCCGTTAACCGAGACCCAAGATACGTCCAACTCAAATTGCACAGCATAAAGGGATGGCCCAAAGGTAGAGCGTGTGTTAGTGT------GTGTGTGTGTGAACGCAAAGCTTCCCTCATTCGCAAAGACAGTAAAACACATCATCAATTCCCCAATGTGATGTGGTCATCA-CCCGGTCTGGGTCGCAGTATACACGCACGCATGCAATCACAGATACGACTGGTGAACATGAAACAACGTATGTAGAGATGCAAAATCAAAGCGATATAGTTATTACGGTAGGCAATGTGAGAAAGCGCGAGGATTACAGTAGTTTAACCAAAAGAAGAATCTTCATAGCACAGACCCTTAACAAATCCCCACCACCACCACCACCATTCGCTGAAATCGTTCACAAAGTAGCAAAGCAAGCAGGTCATGCCATTGGTGATAAGGATGCGCACGTATACGTGGCATATAGCTGGGCCATCGATAGAGAGAGAG----AGGCAGCGAGAGAAAAACGATAAACAT-AC-GCTACTGGCGTCACTGTTCACTCGTGCCCAGCATTAAACATAAAAATTAAACGCGTCCAGTGGCGGGTTCCCTTTTCATGTTCCAATGATTT-CGTTTGAAAGAGAAACGAAATGGTTTT---------TTTTAATTGCATTCTACCTTACTTTGCCTTTGAAAAGTTTTGCCTTTTAGAAGAAAATTCCTTAAACCCCGAGACTGTTCCCTAGGTTATTTTGCAAGTAAAAGTCACAACAAAGGGGGCAGTATAAACATGCGAAACAAAACAAAAAGGAGTTTTTAATTGTTATAGAGAGCAAACAGCAAATGAAAAATGAGAAATCAATCTATAACTAGATCAAAACTTTAAACAAAATTGTAACCAAAATT-GCCTTTGGATG-AAACCGCTCGATGTGTAACGTAAAACAACGTAAAAGAGGAAAAAACCCGAACAAGTAAACGCAAAAGCCACTTCTGAAAACTTAATAGCACACATTGCAACTAGCCAAAATTAAACACAAAACAACGAAAATGAATGCAAGTGAAAATGAGAACCTTAAGAAAACGTATTAAATTGA--ACAGAGATTGTACAGAGCCAGAACAGAAAATCATTACTGCAACAGACCAAACATACAAAGTCGGGTGTCGTATTCCTTAAAATCCATTACATATATATTATGGCTTGATACCATTT--TTTTACATAGGTTTAGCACACTACACAT-CCTTCTCTACACACAGACA--------CGCACATACATAGTTGGTCCCTTCCATCCTTCCAAATGTAAATGTAGACCGTAAAGAATCCGCAAATNGGCGANACGTNATTACTCTTTGANNACTCGACCAACACACCCCTCCNCANGTGTGCGTTAGNTGGGNAGNTGTAAGCGTNTTAANGATGNACNTGCATNAATNTNNCCGTACTNACACNNGTNATTGCTTTNNCT] [+] EMBL BM609124 [CCGGTGCTGCATGGCGGTGAGAGCGAGCGTGTGTGGGAAAGCGAGCGATTGGAAAGGACACAAACACACACACACACACACGCACATACGCTTTTAAAAGGTAGCATAAATAAGTGAAAACCGAACCAATCCGCACGGCCAACACGGATCACACGGAGTTAAAGTTTCAGCAGTCAGAGTCATGAGAGCTTTGGCAACCGATTTCAGTTCAGTTGCTGGAGGTTTGTTGGATTTGTGGGGAAAGGGGAGAGGGGAGGAATACTTCATCATGATTTATAAAGGTAGTGGCAAACAGGGACTAATCCTTCATGGCAGCGCCCCAAAACCAGCGTCGGCAAAGCTGGTGCGTGTGCGGGAAATTTCCCCGATTTTGCTACATATTCGCAGATAGCAGGATGGAGCAAAGTGAGTGATACGAGTTATCCGTTAACCGAGACCCAAGATACGTCCAACTCAAATTGCACAGCATAAAGGGATGGCCCAAAGGTAGAGCGTGTGTTAGTGTGTGTTCGTGTGTGTGTGAACGCAAAACTTCCCTCATTCGCAAAGACAGTAAAACACATCATCAATTCCCCAATGTGATGTGGTCATCACCCCGGTCTGGGTCGCAGTATACACGCACGCATGCAGTCACAGATACGACTCGTGAACATGAAACAACGTATGTAGAGATGCAAAATCAA ] [+] EMBL BM592982 [ ccgGTGCGGGAAATTTCCCCGATTTTGCTACATATTCGCAGATAGCAGGATGGAGCAAAGTGAGTGATACGAGTTAGCCGTTAACCGAGACCCAAGATACGTCCAACTCAAATTGCACAGCATAAAGGGATGGCCCAAAGGTAGAGCGTGTGTTAGTGT GTGTGTGTGTGAACGCAAAGCTTCCCTCATTCGCAAAGACAGTAAAACACATCATCAATTCCCCAATGTGATGTGGTCATCA CCCGGTCTGGGTCGCAGTATACACGCACGCATGCAATCACAGATACGACTGGTGAACATGAAACAACGTATGTAGAGATGCAAAATCAAAGCGATATAGTTATTACGGTAGGCAATGTGAGAAAGCGCGAGGATTACAGTAGTTTAACCAAAAGAAGAATCTTCATAGCACAGACCCTTAACAAATCCCCACCACCACCACCACCATTCGCTGAAATCGTTCACAAAGTAGCAAAGCAAGCAGGTCATGCCATTGGTGATAAGGATGCGCACGTATACGTGGCATATAGCTGGGCCATCGATAGAGAGAGAG AGGCAGCGAGAGAAAAACGATAAACATGACTGCTACTGGCGTCACTGTTCACTCGTGCCCAGCATTAAACATAAAAATTAAACGCGTCCAGTGGCGGGTTCCCTTTTCATGTTCCAATGATTTCCGTTTGAAAG ] [+] EMBL BM586608 [ acgcgtccgGATACGTCCAACTCAAATTGCACAGCATAAAGGGATGGCCCAAAGGTAGAGCGTGTGTTAGTGT GTGTGTGTGTGAACGCAAAGCTTCCCTCATTCGCAAAGACAGTAAAACACATCATCAATTCCCCAATGTGATGTGGTCATCA CCCGGTCTGGGTCGCAGTATACACGCACGCATGCAATCACAGATACGACTGGTGAACATGAAACAACGTATGTAGAGATGCAAAATCAAAGCGATATAGTTATTACGGTAGGCAATGTGA ] [+] EMBL BM587725 [ ccgGAAATCGTTCACAAAGTAGCAAAGCAAGCAGGTCATGCCATTGGTGATAAGGATGCGCACGTATACGTGGCATATAGCTGGGCCATCGATAGAGAGAGAGAGAAAGGCAGCGAGAGAAAAACGATAAACAT AC GCTACTGGCGTCACTGTTCACTCGTGCCCAACATTAAACATAAAAATTAAACGCGTCCAGTTGCGGGTTCCCTTTTCATGTTCCAATGATTT CGTTTGAAAGAGAAACGAAATGGTTTT TTTTAATTGCATTCTACCTTACTTTGCCTTTGAAAAGTTTTGCCTTTTAGAAGAAAATTCCTTAAACCCCGAGACTGTTCCCTAGGTTATTTTGCAAGTAAAAGTCACAACAAAGGGGGCAGTATAAACATGCGAAACAAAACAAAAAGGAGTTTTTAATTGTTATAGAGAGCAAACAGCAAATGAAAAATGAGAAATCAATCTATAACTAGATCAAAACTTTAAACAAAATTGTAACCAAAATT GCCTTTGGATG AAACCGCTCGATGTGTAACGTAAAACAACGTAAAAGAGGAAAAAACCCGAACAAGTAAACGCAAAAGCCACTTCTGAAAACTTAATAGCACACATTGCAACTAGCCAAAATTAAACACAAAACAACGAAAATGAAT ] [+] EMBL BM609420 [ ccgGAGAAACGAAATGGTTTTTTTTTTTAATTTTAATTGCATTCTACCTTACTTTGCCTTTGAAAAGTTTTGTATTTTAGAAGAAAATTCCTTCAACCCCGAGACTGTTCCCTAGGTTATTTTGCAAGTAAAAGTCACAACAAAGGGAGCAGTATAAACATGCGAAACAAAACAAAAAGGAGTTTTTAATTGTTATAGACAGCAAACAGTAAATGAAAAATGAGAAATCAATCTATAACTAGATCGAAACTTTAAACAAAATTGTAACCAAAATT GCCTTTGGATGAAAACCGCTCGATGTGTAATGTAAAACAACATAAAAGAGG AGAAACCCGAACAAGTAAACGCAAAAGCCACTTCTGAAAACTTAATAGCACACATTGCAACTAGCCAAAATTAAACACAAAACAACGAAAATGAATGCAAGTGAAAATGAGAACCTTAAGAAAACGTATTAAATTGA ACAGAGATTGTACAGAGCCAGAACAGAAAATCATTACTGCAACAGACCAAACATACAAAGTCGGGTGTCGTATTCCTTAAAATCCATTACATATATATTATGGCTTGATACCATTT TTTTACATAGGTTTAGCACACTACACAT CCTTCTCTACACACAGACA CGCACATACATAGTTGGTCCCTTCCATCCTTCCAAATGTAAATGTAGACCGTAAAGAATCCGCA ] [+] EMBL CF541948 [ AGTATAAACATGCGAAACAAAACAAAAAGGAGTTTTTAATTGTTATAGAGAGCAAACAGCAAATGAAAAATGAGAAATCAATCTATAACTAGATCAAAACTTTAAACAAAATTGTAACCAAAATTAGCCTTTGGATG AAACCGCTCGATGTGTAACGTAAAACAACGTAAAAGAGGAAAAAACCCGAACAAGTAAACGCAAAAGCCACTTCTGAAAACTTAATAGCACACATTGCAACTAGCCAAAATTAAACACAAAACAACGAAAATGAATGCAAGTGAAAATGAGAACCTTAAGAAAACGTATNAAATTGAACACAGAGATTGTACAGAACCAGAACAGAAAATCATTACTGCAACAGACCAAACATACAAAGTCGGGTGTCGTATACCTTAAAATCCATTACATATATATTATGGCTTGATACCATNTAGTNATAAATAGGTTTAGCACACTACACATACCTTCTCTACACACACACACACACACCCACACACACATAGTTGGTCCCTTCCATCCTTCCAAATGTATATGTAGACCGTAGAGAGTCCGCAAATNGGCGANACGTNATTACTCTTTGANNACTCGACCAACACACCCCTCCNCANGTGTGCGTTAGNTGGGNAGNTGTAAGCGTNTTAANGATGNACNTGCATNAATNTNNCCGTACTNACACNNGTNATTGCTTTNNCT] consensusID : consensus_7351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [CCGCGGACGCGTGGGTTTGCAAGTAAAAGTCACAACAAAGGGGGCAGTATAAACATGCGAAACAAAACAAAAAGGAGTTTTTAATTGTTATAGACAGCAAACAGCAAATGAAAAATGAGAAATCAATCTATAACTAGATCAAAACTTTAAACAAAATTTGTAACCAAAATTGCCTTTGGATGAAAACCGCTCGATGTGTAATGTAAAACAACATAAAAGAGGAGAAACCCGAACAAGTAAACGCAAAAGCCACTTCTGAAAACTTAATAGCACACATTGCAACTAGCCAAAATTAAACACAAAACAACGAAAATGAATGCAAGTGAAAATGAGAACCTTAAGAAAACGTATTAAATTGAACAGAGATTGTACAGAACCAGAACAGAAAATCATTACTGCAACAGACCAAACATACAAAGTCGGGTGTCGTATTCCTTAAAATCCATTACATATATATTATGGCTTGATACCATTTTTTTACATAGGTTTAGCACACTACACATCCTTCTCTACACACAGACACACACATACATAATTGGCCCCTTCCATCCTTCCAAATGTAAATGTAGACCGTAAAGAATCCGCAAATTGGCGAAACGTTATTTCTCTTTTTAAACTCGCCAAAACACCCTCCCCAGTGTG] [+] EMBL BM632308 [CCGCGGACGCGTGGGTTTGCAAGTAAAAGTCACAACAAAGGGGGCAGTATAAACATGCGAAACAAAACAAAAAGGAGTTTTTAATTGTTATAGACAGCAAACAGCAAATGAAAAATGAGAAATCAATCTATAACTAGATCAAAACTTTAAACAAAATTTGTAACCAAAATTGCCTTTGGATGAAAACCGCTCGATGTGTAATGTAAAACAACATAAAAGAGGAGAAACCCGAACAAGTAAACGCAAAAGCCACTTCTGAAAACTTAATAGCACACATTGCAACTAGCCAAAATTAAACACAAAACAACGAAAATGAATGCAAGTGAAAATGAGAACCTTAAGAAAACGTATTAAATTGAACAGAGATTGTACAGAACCAGAACAGAAAATCATTACTGCAACAGACCAAACATACAAAGTCGGGTGTCGTATTCCTTAAAATCCATTACATATATATTATGGCTTGATACCATTTTTTTACATAGGTTTAGCACACTACACATCCTTCTCTACACACAGACACACACATACATAATTGGCCCCTTCCATCCTTCCAAATGTAAATGTAGACCGTAAAGAATCCGCAAATTGGCGAAACGTTATTTCTCTTTTTAAACTCGCCAAAACACCCTCCCCAGTGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7351#0 CCGGTGCTGCATGGCGGTGAGAGCGAGCGTGTGTGGGAAAGCGAGCGATTGGAAAGGACA 60 consensus_7351#1 ------------------------------------------------------------ consensus_7351#0 CAAACACACACACACACACACGCACATACGCTTTTAAAAGGTAGCATAAATAAGTGAAAA 120 consensus_7351#1 ------------------------------------------------------------ consensus_7351#0 CCGAACCAATCCGCACGGCCAACACGGATCACACGGAGTTAAAGTTTCAGCAGTCAGAGT 180 consensus_7351#1 ------------------------------------------------------------ consensus_7351#0 CATGAGAGCTTTGGCAACCGATTTCAGTTCAGTTGCTGGAGGTTTGTTGGATTTGTGGGG 240 consensus_7351#1 ------------------------------------------------------------ consensus_7351#0 AAAGGGGAGAGGGGAGGAATACTTCATCATGATTTATAAAGGTAGTGGCAAACAGGGACT 300 consensus_7351#1 ------------------------------------------------------------ consensus_7351#0 AATCCTTCATGGCAGCGCCCCAAAACCAGCGTCGGCAAAGCTGGTGCGTGTGCGGGAAAT 360 consensus_7351#1 ------------------------------------------------------------ consensus_7351#0 TTCCCCGATTTTGCTACATATTCGCAGATAGCAGGATGGAGCAAAGTGAGTGATACGAGT 420 consensus_7351#1 ------------------------------------------------------------ consensus_7351#0 TATCCGTTAACCGAGACCCAAGATACGTCCAACTCAAATTGCACAGCATAAAGGGATGGC 480 consensus_7351#1 ------------------------------------------------------------ consensus_7351#0 CCAAAGGTAGAGCGTGTGTTAGTGTGTGTGTGTGTGAACGCAAAGCTTCCCTCATTCGCA 540 consensus_7351#1 ------------------------------------------------------------ consensus_7351#0 AAGACAGTAAAACACATCATCAATTCCCCAATGTGATGTGGTCATCACCCGGTCTGGGTC 600 consensus_7351#1 ------------------------------------------------------------ consensus_7351#0 GCAGTATACACGCACGCATGCAATCACAGATACGACTGGTGAACATGAAACAACGTATGT 660 consensus_7351#1 ------------------------------------------------------------ consensus_7351#0 AGAGATGCAAAATCAAAGCGATATAGTTATTACGGTAGGCAATGTGAGAAAGCGCGAGGA 720 consensus_7351#1 ------------------------------------------------------------ consensus_7351#0 TTACAGTAGTTTAACCAAAAGAAGAATCTTCATAGCACAGACCCTTAACAAATCCCCACC 780 consensus_7351#1 ------------------------------------------------------------ consensus_7351#0 ACCACCACCACCATTCGCTGAAATCGTTCACAAAGTAGCAAAGCAAGCAGGTCATGCCAT 840 consensus_7351#1 ------------------------------------------------------------ consensus_7351#0 TGGTGATAAGGATGCGCACGTATACGTGGCATATAGCTGGGCCATCGATAGAGAGAGAGA 900 consensus_7351#1 ------------------------------------------------------------ consensus_7351#0 GGCAGCGAGAGAAAAACGATAAACATACGCTACTGGCGTCACTGTTCACTCGTGCCCAGC 960 consensus_7351#1 ------------------------------------------------------------ consensus_7351#0 ATTAAACATAAAAATTAAACGCGTCCAGTGGCGGGTTCCCTTTTCATGTTCCAATGATTT 1020 consensus_7351#1 ------------------------------------------------------------ consensus_7351#0 CGTTTGAAAGAGAAACGAAATGGTTTTTTTTAATTGCATTCTACCTTACTTTGCCTTTGA 1080 consensus_7351#1 ------------------------------------------------------------ consensus_7351#0 AAAGTTTTGCCTTTTAGAAGAAAATTCCTTAAACCCCGAGACTGTTCCCTAGGTTATTTT 1140 consensus_7351#1 -----------------------------------------CCGCGGAC-GCGTGGGTTT 18 * * * ** *** consensus_7351#0 GCAAGTAAAAGTCACAACAAAGGGGGCAGTATAAACATGCGAAACAAAACAAAAAGGAGT 1200 consensus_7351#1 GCAAGTAAAAGTCACAACAAAGGGGGCAGTATAAACATGCGAAACAAAACAAAAAGGAGT 78 ************************************************************ consensus_7351#0 TTTTAATTGTTATAGAGAGCAAACAGCAAATGAAAAATGAGAAATCAATCTATAACTAGA 1260 consensus_7351#1 TTTTAATTGTTATAGACAGCAAACAGCAAATGAAAAATGAGAAATCAATCTATAACTAGA 138 **************** ******************************************* consensus_7351#0 TCAAAACTTTAAACAAAATT-GTAACCAAAATTGCCTTTGGATGAAA-CCGCTCGATGTG 1318 consensus_7351#1 TCAAAACTTTAAACAAAATTTGTAACCAAAATTGCCTTTGGATGAAAACCGCTCGATGTG 198 ******************** ************************** ************ consensus_7351#0 TAACGTAAAACAACGTAAAAGAGGAAAAAACCCGAACAAGTAAACGCAAAAGCCACTTCT 1378 consensus_7351#1 TAATGTAAAACAACATAAAAGAGGAGAAA-CCCGAACAAGTAAACGCAAAAGCCACTTCT 257 *** ********** ********** *** ****************************** consensus_7351#0 GAAAACTTAATAGCACACATTGCAACTAGCCAAAATTAAACACAAAACAACGAAAATGAA 1438 consensus_7351#1 GAAAACTTAATAGCACACATTGCAACTAGCCAAAATTAAACACAAAACAACGAAAATGAA 317 ************************************************************ consensus_7351#0 TGCAAGTGAAAATGAGAACCTTAAGAAAACGTATTAAATTGAACAGAGATTGTACAGAGC 1498 consensus_7351#1 TGCAAGTGAAAATGAGAACCTTAAGAAAACGTATTAAATTGAACAGAGATTGTACAGAAC 377 ********************************************************** * consensus_7351#0 CAGAACAGAAAATCATTACTGCAACAGACCAAACATACAAAGTCGGGTGTCGTATTCCTT 1558 consensus_7351#1 CAGAACAGAAAATCATTACTGCAACAGACCAAACATACAAAGTCGGGTGTCGTATTCCTT 437 ************************************************************ consensus_7351#0 AAAATCCATTACATATATATTATGGCTTGATACCATTTTTTTACATAGGTTTAGCACACT 1618 consensus_7351#1 AAAATCCATTACATATATATTATGGCTTGATACCATTTTTTTACATAGGTTTAGCACACT 497 ************************************************************ consensus_7351#0 ACACATCCTTCTCTACACACAGACACGCACATACATAGTTGGTCCCTTCCATCCTTCCAA 1678 consensus_7351#1 ACACATCCTTCTCTACACACAGACACACACATACATAATTGGCCCCTTCCATCCTTCCAA 557 ************************** ********** **** ***************** consensus_7351#0 ATGTAAATGTAGACCGTAAAGAATCCGCAAATNGGCGANACGTNATTACTCTTTGANNAC 1738 consensus_7351#1 ATGTAAATGTAGACCGTAAAGAATCCGCAAATTGGCGAAACGTTATTTCTCTTTTTAAAC 617 ******************************** ***** **** *** ****** ** consensus_7351#0 TCGACCAACACACCCCTCCNCANGTGTGCGTTAGNTGGGNAGNTGTAAGCGTNTTAANGA 1798 consensus_7351#1 TCG-CCAAAACACCCTCCCCAGTGTG---------------------------------- 642 *** **** ****** ** *** consensus_7351#0 TGNACNTGCATNAATNTNNCCGTACTNACACNNGTNATTGCTTTNNCT 1846 consensus_7351#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||