|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7359#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1359 fasta sequence
[TCGGTTCGCTGCACGGCTCGCTCTTTTCCGAGGTCGGTACGGCCTCCTCCACCCAGCGTACCGCCGACGGCAATGAGGTGAACGGTGGCGGCTCCTTCATGAACAGCGACGGCGGTACCAGCCAACCGTCGTCCAAGGGCGGTCTATCTTCCGAGCCACACGAGGGCGTGATCGACACGAACGAAAATGCCACCGATGGTGATATAGCGGCGCCGCTACTGGAAGCTTCCCTCGAAGCGTCGTCGTCCTCCGCTCCCACCACTGCGTCGGCTGTCGCCGAACGAACCGAGAAAAGCGATGAGATTGAACCGGCACCGCTGCAGGAGGAGGCGGAGAGCACGGCAACAGAGGACAAAGAAAACATCGCCAGCACGACGGACGCACCTCCTGCCCAAACGGCACGGGAGGAAGAGATTACCTCGGCACGGGACGATGGAATAAGCGAGGCGGCAGAGAAACAACGCGAGGACGGTGCGCTTGAAAAGGCGAAGGA---TAGTTCCGTGGAAGAAGAGAAACCCGTGGACGAAGCTGGCGGCCAGTCGCTGCCAAACCCAGCAGCTTCCGGTGAGGTTGCAGCAGAAGAACAAACCGCTGCACCACTGGACGATGGCGAACCGCAAGCCAAAATGGTGAAGTACGCCGATGATGCAGCACCACAGGAAGAAAAATCGAACCTTTGTACTAGCGTGATCAAGGCCGATGTGCATGCTTCCGGGGACGATGGCGATTCAGCGATGAAACAGGCTGAAGATACAGTGGCACACCTTGATAGCACCGCCGCGAAGCCGACCGATACCACCGTAGGCCAGTCACTCACGGAGCAGAGTGCTACCGGTGGCAGCAGTTCCGCCGTTGCAACGGTTGTGTCCGGTGGCGCTGATGGTGAATCGACAGTCACTGGCATTGCACCGGTGGAAAGC-AGTACTCCGATCGGCGAAGAGGAGAAGGACGGCCAAGAACATTCCAC-GGGACTGCAGGTGGAAACGACGGTAGCTGCGGGAGTGGCAAGAGATGATCCGGATGTTGAGCAGCTCGTACCGGAGCCTGCATTAACCGAACCCACCTCCACCGAAGTAACGTCCACGAATGCGTCCGAGATGGAACTAACGACGACGGCAACACCACAACCGGCTTCAACAGACAGCAGCAGCAGCAGTGCAGCGGCACCTACCTCGGACGAGCTAGAGATGGAGCTGGCTACGGCTTCCGGCCCTGCCCCAGCAGCACCACCAACCGCAGCAGAGGCTGCAGTGGAGGAGGTCGACATGGCGGGCGGCGAAACGACGGGAGCAACGGAAATGACAACCGAGGACCCTAAACAGGACGACAATGTGATGGACATCGACGAGTCAAGCGTTG]
[+] EMBL BX605063 [TCGGTTCGCTGCACGGCTCGCTCTTTTCCGAGGTCGGTACGGCCTCCTCCACCCAGCGTACCGCCGACGGCAATGAGGTGAACGGTGGCGGCTCCTTCATGAACAGCGACGGCGGTACCAGCCAACCGTCGTCCAAGGGCGGTCTATCTTCCGAGCCACACGAGGGCGTGATCGACACGAACGAAAATGCCACCGATGGTGATATAGCGGCGCCGCTACTGGAAGCTTCCCTCGAAGCGTCGTCGTCCTCCGCTCCCACCACTGCGTCGGCTGTCGCCGAACGAACCGAGAAAAGCGATGAGATTGAACCGGCACCGCTGCAGGAGGAGGCGGAGAGCACGGCAACAGAGGACAAAGAAAACATCGCCAGCACGACGGACGCACCTCCTGCCCAAACGGCACGGGAGGAAGAGATTTCGTCGGCACGGGACGATGGAATAAGCGAGGCGGCAGAGAAACAACGCGAGGACGGTGCGCTTGAAAAAGCGAAGGA TAGTTCCGTGGAAGAAGAGAAACCCGTGGACGAGGCTGGCGGCCAGTCGCTGCCAAACCCAGCAGCTTCCGGTGAGGTTGCAGCAGAAGAACAAACCGCTGCACCACTGGACGATGGCGAACCGCAAGCCAAAATGGTGAAGTACGCCGATGATGCAGCAC ]
[+] EMBL BM583560 [ ccgGCTACTGGAAGCTTCCCTCGAAGCGTCGTCGTCCTCCGCCACCTCCACTGCGTCGGCTGTCGCCGAAAGAACCGACAAAAGCGATGAGATTGAACCGGCACCGCTGCAGGAGGAGGCGGAGAGCACGGCAACAGAGGACAAAGAAAACATCGCCAGCACGACGGACGCACCTCCCGCCCAAACGGAACGGGAGGAAGAAATTACCTCGGCACGGGACGATGAAATAGGCGAGGCGGCAGAGAAACAACGCGAGGACGGTGCGCTTGAAAAGGCGAAGGAAGGAAGTTCCGTGGAAGAAGAGAAACCCGTGGACGAAGCTGGCGGCCAGTCGCTGCCAAACCCAGCAGCTTCCGGTGAGGTTGCAGCAGAAGAACAAACCGCTGCACCACTGGACGATGGCGAACCACAGGCCAAAATGCTGAAGTACGCCGATGATGCAGCACCACAGGAAGAAAAATCGAACCTTTGTACTAGCGTGATCAAGGCCGATGTGCATGCTTCCGGGGACGATGGCGATTCAGCGATGAAACAGGCTGAAGATACAGTGGCACACCTTGATAGCACCGCCGCGAAGCCGACCGATACCACCGTAGGCCAGTCACTCACGGAGCAGAGTGCTACCGGTGGCAGCAGTTCCGCCGTTGCAACGGTTGTGTCCGGTGGCGCTGATGGTGAATCGA ]
[+] EMBL BM601285 [ ccGAGGCGGAGAGCACGGCAACAGAGGACAAAGAAAACATCGCCAGCACGACGGACGCACCTCCTGCACAAACAGCACGGGAGGAAGAGATTACCTCGGCACGGGGCGATGGAATAAGCGAGGCGGTAGAGAACCAACGCGAGGACAGTGCGCTTGAAAAGGCGAAGGA TAGTTCCGTGGAAGAAGAGAAACCCGTGGACGAAGCTGGCGGCCAGTCGCTGCCAAACCCAGCAGCTTCCGGTGAGGTTGCAGCAGAAGAACAAACCGCTGCACCACTGGACGATGGCGAACCGCAGGCCAAAATGGTGAAGTACGCCGATGATGCAGCACCACAGGAAGAAAAATCGAACCTTTGTACCAGCGTGATCAAGGCCGATGTGCATGCTTCCGGGGACGATGGCGATTCAGCGATGAAACAGGCTGAAGATACAGTGGCACACCTTGATAGCACCGCCGCGAAGCCGACCGATACCACCGTAGGCCAGTCACTCACGGAGCAGAGTGCTACCGGTGGCAGCAGTTCCGCCATTGCAACGGTTGTTTCCGGTAGCGCTGATGGTGAATCGACAGTCACTGACATTGCACCAGTGGAAAGC AGTACTCCGACCGGCGAAGAGGAGAAGGACGGCCAAGAACATTCCACGGGGACTGCAGGTGGAAACGACGG ]
[+] EMBL AGA282280 [ ACGGTACGGGAGGAAGAGATTACCTCGGCACGGGACGATGGAATAAGCGAGGCGGCAGAGAAACAATGCGAGGACGGTGCGCTTGAAAAGGCGAAGGA TAGTTCCGTGGAAGAAGAGAAACCCGTGGACGAAGCTGGCGGCCAGTCGCTGCCAAACCCAGCAGCTTCCGGTGAGGTTGCAGCAGAAGAACAAACCGCTGCACCACTGGACGATGGCGAACCGCAAGCCAAAATGGTGAAGTACGCCGATGATNCANCACCACAGGAAGAAAAATCGAACCTTTGTACTAGCGTGATCAAGGCCGATGTGCATGCTTCCGGGGACGAAGGCGATTCAGCGATGAAACAGGCTGAAGATACAGTGGCACACCTTGATAGCACCGCCGCGAAGCCGACCGA ]
[+] EMBL BX623474 [ GTAGGCCAGTCACTCACGGAGCATAGTGCTACCGGTGGCAGCAGTTCCGCCGTTGCAACGGTTGTGTCCGGTGGCGCTGATGGTGAATCGACAGTCACTGGCATTGCACCGGTGGAAGCCAATTACTCCGATCGGTGAAGAGGAGAAGGACGGCCAAGAACATTCCAC GGGACTGCAGGTGGAAACGACGGTAGCTGCGGGAGTGGCAAGAGATGATCCGGATGTTGAGCAGCTCGTACCGGAGCCTGCATTAACCGAACCCACCTCCACCGAAGTAACGTCCACGAATGCGTCCGAGATGGAACTAACGACGACGGCAACACCACAACCGGCTTCAACAGACAGCAGCAGCAGCAGTGCAGCGGCACCTACCTCGGACGAGCTAGAGATGGAGCTGGCTACGGCTTCCGGCCCTGCCCCAGCAGCACCACCAACCGCAGCAGAGGCTGCAGTGGAGGAGGTCGACATGGCGGGCGGCGAAACGACGGGAGCAACGGAAATGACAACCGAGGACCCTAAACAGGACGACAATGTGATGGACATCGACGAGTCAAGCGTTG]
[+] EMBL BM595693 [ CCG CGTTGCAACGGTTGTGTCCGGTGGCGCTGATGGTGAATCGACAGTCACTGGCATTGCACCGGTGGAAAGC AGTACTCCGATCGGCGAAGAGGAGAAGGACGGCCAAGAACATTCCAC GGGACTGCAGGTGGAAACGACGGTAGCTGCGGGAGTGGCAAGGGATGATCCGGCTGTTGAGCAGCTCGTACCGGAGCCTGCAATAACCGAACCCACCTCCGCCGAAGTAACGTCCACGAATGCGTCCGAGATGGAACTAACGACGACGGCAACACCACAACCGGCTTCAACAGACAGCAGCAGCAGCAGTGCAGCGGCACCTACCTCGGACGAGCTAGAGATGGAGCTGGCGACGGCTTCCGGCCCTGCCCCAGCAGCAACACCGACCGCAGCAGAGGCTGCAGTGGAGGAGGTCGACATGGCGGGCGGCGAAACGACGGGAGCAACGGAAATGACAACCGAGGACCCTAAACAGGACGA ]
consensusID : consensus_7359#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[AGAATCCCCCGAGGTTNAATTACTNGGCACGGGACTGATGTGAATAAGCGAGGCTNGCAGAGAAACAATGCGAGGACGGTGCGCTTGAAAAGGCGAAGTGATAGTTCCTGTGGAAGAAGAGAAACCCGTGGACGAAGCTGGCTGGCCAGTCGCTGCCAAACCCAGCAGCTTCCGGTGAGGTTGCAGCAGAAGAACAAACCTGCTGCACCACTGGACGATGGCGAACCGCAATGCCAAAATGGTGAAGTACTGCCGATGTATGCATGCACCACAGGAAGAAAAATCGAACCTTTGTACTAGCGTGATCAAGGCCGATGTGCATTGCTTCCGGGGACGAAGGCGATTCAGCGATGAAACAGGCTGAAGATACAGTGGCACACCTTGATAGCACCGGCGCGAAGCCTGACGATACCACCGTAGAGCCAGTCACTCACTGGAGCATAGTGCTACCGGTGGCAGCAGTTCCTGCGTTGCAACGGTTGTGTCCGGTGGCGCTGATTGGTGCAATCGACAGTCACTGGCATTTGCACCGGTGTGAAAGCAGTACTCCGAGTACGGTGAAAAGCGAGAAGGACGGCAAGAACAT]
[+] EMBL AL930459 [AGAATCCCCCGAGGTTNAATTACTNGGCACGGGACTGATGTGAATAAGCGAGGCTNGCAGAGAAACAATGCGAGGACGGTGCGCTTGAAAAGGCGAAGTGATAGTTCCTGTGGAAGAAGAGAAACCCGTGGACGAAGCTGGCTGGCCAGTCGCTGCCAAACCCAGCAGCTTCCGGTGAGGTTGCAGCAGAAGAACAAACCTGCTGCACCACTGGACGATGGCGAACCGCAATGCCAAAATGGTGAAGTACTGCCGATGTATGCATGCACCACAGGAAGAAAAATCGAACCTTTGTACTAGCGTGATCAAGGCCGATGTGCATTGCTTCCGGGGACGAAGGCGATTCAGCGATGAAACAGGCTGAAGATACAGTGGCACACCTTGATAGCACCGGCGCGAAGCCTGACGATACCACCGTAGAGCCAGTCACTCACTGGAGCATAGTGCTACCGGTGGCAGCAGTTCCTGCGTTGCAACGGTTGTGTCCGGTGGCGCTGATTGGTGCAATCGACAGTCACTGGCATTTGCACCGGTGTGAAAGCAGTACTCCGAGTACGGTGAAAAGCGAGAAGGACGGCAAGAACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7359#0 TCGGTTCGCTGCACGGCTCGCTCTTTTCCGAGGTCGGTACGGCCTCCTCCACCCAGCGTA 60
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 CCGCCGACGGCAATGAGGTGAACGGTGGCGGCTCCTTCATGAACAGCGACGGCGGTACCA 120
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 GCCAACCGTCGTCCAAGGGCGGTCTATCTTCCGAGCCACACGAGGGCGTGATCGACACGA 180
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 ACGAAAATGCCACCGATGGTGATATAGCGGCGCCGCTACTGGAAGCTTCCCTCGAAGCGT 240
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 CGTCGTCCTCCGCTCCCACCACTGCGTCGGCTGTCGCCGAACGAACCGAGAAAAGCGATG 300
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 AGATTGAACCGGCACCGCTGCAGGAGGAGGCGGAGAGCACGGCAACAGAGGACAAAGAAA 360
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 ACATCGCCAGCACGACGGACGCACCTCCTGCCCAAACGGCACGGGAGGAAGAGATTACCT 420
consensus_7359#1 ----------------------------------AGAATCCCCCGAGGTTNA-ATTAC-T 24
* * * **** * ***** *
consensus_7359#0 CGGCACGGGAC-GATG-GAATAAGCGAGGC-GGCAGAGAAACAACGCGAGGACGGTGCGC 477
consensus_7359#1 NGGCACGGGACTGATGTGAATAAGCGAGGCTNGCAGAGAAACAATGCGAGGACGGTGCGC 84
********** **** ************* ************ ***************
consensus_7359#0 TTGAAAAGGCGAAG-GATAGTTCC-GTGGAAGAAGAGAAACCCGTGGACGAAGCTGGC-G 534
consensus_7359#1 TTGAAAAGGCGAAGTGATAGTTCCTGTGGAAGAAGAGAAACCCGTGGACGAAGCTGGCTG 144
************** ********* ********************************* *
consensus_7359#0 GCCAGTCGCTGCCAAACCCAGCAGCTTCCGGTGAGGTTGCAGCAGAAGAACAAACC-GCT 593
consensus_7359#1 GCCAGTCGCTGCCAAACCCAGCAGCTTCCGGTGAGGTTGCAGCAGAAGAACAAACCTGCT 204
******************************************************** ***
consensus_7359#0 GCACCACTGGACGATGGCGAACCGCAA-GCCAAAATGGTGAAGTAC-GCCGATG-ATGCA 650
consensus_7359#1 GCACCACTGGACGATGGCGAACCGCAATGCCAAAATGGTGAAGTACTGCCGATGTATGCA 264
*************************** ****************** ******* *****
consensus_7359#0 -GCACCACAGGAAGAAAAATCGAACCTTTGTACTAGCGTGATCAAGGCCGATGTGCAT-G 708
consensus_7359#1 TGCACCACAGGAAGAAAAATCGAACCTTTGTACTAGCGTGATCAAGGCCGATGTGCATTG 324
********************************************************* *
consensus_7359#0 CTTCCGGGGACGATGGCGATTCAGCGATGAAACAGGCTGAAGATACAGTGGCACACCTTG 768
consensus_7359#1 CTTCCGGGGACGAAGGCGATTCAGCGATGAAACAGGCTGAAGATACAGTGGCACACCTTG 384
************* **********************************************
consensus_7359#0 ATAGCACCGCCGCGAAGCCGACCGATACCACCGTAG-GCCAGTCACTCAC-GGAGCAGAG 826
consensus_7359#1 ATAGCACCGGCGCGAAGCCTGACGATACCACCGTAGAGCCAGTCACTCACTGGAGCATAG 444
********* ********* ************** ************* ****** **
consensus_7359#0 TGCTACCGGTGGCAGCAGTTCCGCCGTTGCAACGGTTGTGTCCGGTGGCGCTGAT-GGTG 885
consensus_7359#1 TGCTACCGGTGGCAGCAGTTCCTGCGTTGCAACGGTTGTGTCCGGTGGCGCTGATTGGTG 504
********************** ******************************* ****
consensus_7359#0 -AATCGACAGTCACTGGCATT-GCACCGGTG-GAAAGCAGTACTCCGAT--CGGCGAAGA 940
consensus_7359#1 CAATCGACAGTCACTGGCATTTGCACCGGTGTGAAAGCAGTACTCCGAGTACGGTGAAAA 564
******************** ********* **************** *** *** *
consensus_7359#0 G-GAGAAGGACGGCCAAGAACATTCCACGGGACTGCAGGTGGAAACGACGGTAGCTGCGG 999
consensus_7359#1 GCGAGAAGGACGGC-AAGAACAT------------------------------------- 586
* ************ ********
consensus_7359#0 GAGTGGCAAGAGATGATCCGGATGTTGAGCAGCTCGTACCGGAGCCTGCATTAACCGAAC 1059
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 CCACCTCCACCGAAGTAACGTCCACGAATGCGTCCGAGATGGAACTAACGACGACGGCAA 1119
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 CACCACAACCGGCTTCAACAGACAGCAGCAGCAGCAGTGCAGCGGCACCTACCTCGGACG 1179
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 AGCTAGAGATGGAGCTGGCTACGGCTTCCGGCCCTGCCCCAGCAGCACCACCAACCGCAG 1239
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 CAGAGGCTGCAGTGGAGGAGGTCGACATGGCGGGCGGCGAAACGACGGGAGCAACGGAAA 1299
consensus_7359#1 ------------------------------------------------------------
consensus_7359#0 TGACAACCGAGGACCCTAAACAGGACGACAATGTGATGGACATCGACGAGTCAAGCGTTG 1359
consensus_7359#1 ------------------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||