These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7361#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1320 fasta sequence [GTCCACGATACTGCCGCGGTGCGCATCCGAATTGTGGCACAGATATCGCAGTCGTCGTTGCGAAACCAATATGTGCCCGTTCGGATCGGATATAACCACCGCCAAAATCACCAACATCATCATCACCATCATCGTCATCATCTTGCTCAAATGGCCAAACCAACACGAGAACAACAAAACAAAAACTGTGCCATCGTAAGGCTGGTAGTTACTAGGTGCCACGTAGTTTATCGTAAAGAGACAGAGCGACCATTTGTATGCTGGCAACATCATGCGACAATACTGGTCGCGTGAAATACACACCGTATCATGGACATGGGCGCAATAGGCAGAGCAAAGCAAACGTAGTCGGCTTTCGAAAAGGGGTCGAACTGCAGTAGGGTAGACAGGATGCTTAATTGCGCACAGCGCGCCCCGTGCTGTGGCTAGCGAGAACTTTTTTTTCAGTTTAATGACTTATACTGGCACCGCCTTTTCTAAAGATGCGCACTATCATAGAATTCACCCGATAGGCTTTCCTAAACCTAAGTGCACAAAAGTGAGTCTTTTCATTCGATACCAAAGAGCTTGATTTCTAGTCTAGAAGTATAATTACATTAAAGCAACATTTTCGATCTGCGAAAGATACCCGTTGCCGGAACGTGGTACTTTCTTTTACCTACTCAAATACTGCATGTTTGTAATATACCCTACACTTTTTTCTACCGTACGCTGCAGAGTTGCACCTTTACCTTGACGGTTGCATTCTCTT-AAAAAAACTATAAAAATCAAAACTACTACTAGCAATAGCAACAAAATGGGCAGCGACAAAATAAGCGGGTTTCAGAAAATCTTAGAAACTAGACATTGTTGATACATGCATGTGGTAATGCGACAATTCTTAGATAAATTTGGAATATAAAATTTGTATCTGCTCATCTGTGTCAAATATCAGGTACCAGTGGGTACATGCGCAAAAGAGGAAGGACAATTAAAAGCAAATACTTCAATATTTCATCAATCTTGTCATAATACAGCGTCATAAAATTTTGAAACATGTTTACTTAAGTGTAGTGAACCGGAAGGTTTGAAAAAAAACACGCATATATCAATCCACTCAATAACTGACCAGTAATAAACATACGTGTACGTTTTGAACATTGCGTGATTGTGACGAAGAATATCGCTCCCGTTCCGACCGTGTAAAATTGCACACACGCGTGTGTGGTGTGTCCTGTTTTAGGATTTTGTTGGCAATAGTATACATCGTATGGTTGATATTAGCAGAATCCAAGCCCAATGTATCTAGACAAGGTAAACCGTTTCAAATACAACACCTCG] [+] EMBL BX618729 [GTCCACGATACTGCCGCGGTGCGCATCCGAATTGTGGCACAGATATCGCAGTCGTCGTTGCGAAACCAATATGTGCCCGTTCGGATCGGATATAACCACCGCCAAAATCACCAACATCATCATCACCATCATCGTCATCATCTTGCTCAAATGGCCAAACCAACACGAGAACAACAAAACAAAAACTGTGCCATCGTAAGGCTGGTAGTTACTAGGTGCCACGTAGTTTATCGTAAAGAGACAGAGCGACCATTTGTATGCTGGCAACATCATGCGACAATACTGGTCGCGTGAAATACACACCGTATCATGGACATGGGCGCAATAGGCAGAGCAAAGCAAACGTAGTCGGCTTTCGAAAAGGGGTCGAACTGCAGTAGGGTAGACAGGATGCTTAATTGCGCACAGCGCGCCCCGTGCTGTGGCTAGCGAGAACTTTTTTTTCAGTTTAATGACTTATACTGGCACCGCCTTTTCTAAAGATGCGCACTATCATAGAATTCACCCGATAGGCTTTCCTAAACCTAAGTGCAC ] [+] EMBL BX608784 [ AATACACACCGTATCATGGACATGGGCTCAATAGGCAGAGCAAAGCAAACGTAGTCGGCTTTCGAAAAGGGGTCGAACTGCAGTAGGGTAGACATGATGCTTAATTGCGCACAGCGCTCCCCGTGCTGTGGCTAGCGAGAACTTTTTTTTCAGTTTAATGACTTATACTGGCACCGCCTTTTCTAAAGATGCGCACTATCATAGAATTCACCCGATAGGCTTTCCTAAACCTAAGTGCACAAAAGTGAGTCTTTTCATTCGATACCAAAGAGCTTGATTTCTAGTCTAGAAGTATAATTACATTAAAGCAACATTTTCGATCTGCGAAAGATACCCGTTGCCGGAACGTGGTACTTTCTTTTACCTACTCAAATACTGCATGTTTGTAATATACCCTACACTTTTTTCTACCGTACGCTGCAGAGTTGCACCTTTACCTTGACGGTTGCATTCTCTT AAAAAAACTATAAAAATCAAAACTACTACTAGCAATAGCAACAAAATGGGCAGCGACAAAATAAGCGGGTTTCAGAAAATCTTAGAAACTAGACATTGTTGATACATGCATGTGGTAATGCGACAATTCTTAGATAAATTTGGAATATAAAATTTGTATCTGCTCATCTGTGTCAAATATCAGGTACCAG ] [+] EMBL BX615728 [ TACACACCGTATCAGGGACATGGGCGCAATAGGCAGAGCAAAGCAAACGTAGTCGGCTTTCGAAAAGGGGTCGAACTGCAGTAGGGTAGACAGGATGCTTAATTGCGCACAGCGCGCCCCGGGCTGTGGCTAGCGAGAACTTTTTTTTCAGTTTAATGACTTATACTGGCACCGCCTTTTCTAAAGATGCGCACTATCATAGAATTCACCCGATAGGCTT ] [-] EMBL BX611349 [ AACGTGGTACTTTCTTTTACCTACTCAAATACTGCATGTTTGTAATATACCCTACACTTTTTTCTACCGTACGCTGCAGAGTTGCACCTTTACCTTGACGGTTGCATTCTCTTAAAAAAAACTATAAAAATCAAAACTACTACTAGCAATAGCAACAAAATGGGCAGCGACAAAATAAGCGGGTTTCAGAAAATCTTAGAAACTAGACATTGTTGATACATGCATGTGGTAATGCGACAATTCTTAGATAAATTTGGAATATAAAATTTGTATCTGCTCATCTGTGTCAAATATCAGGTACCAGTGGGTACATGCGCAAAAGAGGAAGGACAATTAAAAGCAAATACTTCAATATTTCATCAATCTTGTCATAATACAGCGTCATAAAATTTTGAAACATGTTTACTTAAGTGTAGTGAACCGGAAGGTTTGAAAAAAAACACGCATATATCAATCCACTCAAT ] [+] EMBL BX623850 [ AATCTTGTCATAATACAGCGTCATAAAATTTTGAAACATGTTTACTTAAGTGTAGTGAACCGGAAGGTTTGAAAAAAAACACGCATATATCAATCCACTCAATAACTGACCAGTAATAAACATACGTGTACGTTTTGAACATTGCGTGATTGTGACGAAGAATATCGCTCCCGTTCCGACCGTGTAAAATTGCACACACGCGTGTGTGGTGTGTCCTGTTTTAGGATTTTGTTGGCAATAGTATACATCGTATGGTTGATATTAGCAGAATCCAAGCCCAATGTATCTAGACAAGGTAAACCGTTTCAAATACAACACCTCG] [+] EMBL BM620470 [ AACATTGCGTGATTGTGACGAAGAATATCGCTCCCGTTCCGACCGTGTAAAATTGCACACAAGCGTGTGTGGTGTGTCCTGTTTTAGGATTTTGTTGGCAATAGTATACATCGTATGGTTGATATTAGCAGAATCCAAGCCCAATGTATCTAGACAAGGTAAACCGTTTCAAA ] consensusID : consensus_7361#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1229 fasta sequence [AGATACCCCCGAGTTNAATTTATGTAAAGAGACAGCAGCGACATTTGTATTCTGGCACCATCATGCGACAATACTGGTCGCGTAAATAAACACCGTATACATGGACATGGGCGCAATAGGCAGAGCAAAGCAAACGTAGTACGGCTTTCGAAAAGGGGTACGAACTGAGTANGGTAGACAGGATGCTATAATATGCGCACAGTGNCGCCCCGTGCTAGTAGGCTAGCGAGAACTTATATTATAGAAACAGNNATAATAGGACNTTTATAAATTGGGCACCGGCTTTTTACTAAACAGGCATNGCGCCACCTATACATAAGAANATNTCACCCCTGATAAGGCTANATACCTAACACACCCCTCAAAGGTNGGCCCAACACGACAAGTTAGGAAGGTACTCANAGATGCCAANCATACGGANATAAACCCCAAACAGAGGCTATGGACTATATTCACTAAAGTNCCTTCAAGCAAACAGATCANTTAACACTNTAAACATATTAAACACAGACACANACCACATATANNACTCCGGCCAGCTCACTAGGCGGNACAACCGNAATAANACCCCCGGNTAGACACCGGGGGAAAACGGTATGGGNNANCCCGTTATNTCCCTATATTAATANAACCCACCTTNAANCTCCCAAAATAAATAACCTTAGGGCNAACATTGGGCTAATACGGGATACAACANAAACTNANTACCCCCCCCCACTCTACNACCATTCATAAATATAATACCTAAAACCNCNGCTAACCACACCCTTTGCCNCACGAACCAACACNATTGGCACCCCCCACTATTATNNAACCCCCCTANTTGCCNACCCGCAGCCTCTTNNGCACATANCACCATCCCATNATANCAACCAAACANAACCNTACATAACATCACNACACTACACCACACCACCTTACCGCACANCCCGNTAAAANNCCACAACNAACNGACAAACNCCACAAACAACATGGGTGNNGCATNCGCGGCAGCACCNGCCTCANCNACACAAGCCCGGGGGNCGNNTACCCNCACACACAATCACCTANCCACAACACACACTAACCCACCCATCTGGGACGAGCGTACCCACTNGGCCCATGTATNGGGCTACCACCATGGCCGGCACACCACCCCCCCNGATAACNATAAAAAAGTCATACGGGGACGNNTNGCACNGCANCAGGACATNACATTGGGCCTCCACCCTCAGGCGGGCCTCCACCCG] [+] EMBL AL693398 [AGATACCCCCGAGTTNAATTTATGTAAAGAGACAGCAGCGACATTTGTATTCTGGCACCATCATGCGACAATACTGGTCGCGTAAATAAACACCGTATACATGGACATGGGCGCAATAGGCAGAGCAAAGCAAACGTAGTACGGCTTTCGAAAAGGGGTACGAACTGAGTANGGTAGACAGGATGCTATAATATGCGCACAGTGNCGCCCCGTGCTAGTAGGCTAGCGAGAACTTATATTATAGAAACAGNNATAATAGGACNTTTATAAATTGGGCACCGGCTTTTTACTAAACAGGCATNGCGCCACCTATACATAAGAANATNTCACCCCTGATAAGGCTANATACCTAACACACCCCTCAAAGGTNGGCCCAACACGACAAGTTAGGAAGGTACTCANAGATGCCAANCATACGGANATAAACCCCAAACAGAGGCTATGGACTATATTCACTAAAGTNCCTTCAAGCAAACAGATCANTTAACACTNTAAACATATTAAACACAGACACANACCACATATANNACTCCGGCCAGCTCACTAGGCGGNACAACCGNAATAANACCCCCGGNTAGACACCGGGGGAAAACGGTATGGGNNANCCCGTTATNTCCCTATATTAATANAACCCACCTTNAANCTCCCAAAATAAATAACCTTAGGGCNAACATTGGGCTAATACGGGATACAACANAAACTNANTACCCCCCCCCACTCTACNACCATTCATAAATATAATACCTAAAACCNCNGCTAACCACACCCTTTGCCNCACGAACCAACACNATTGGCACCCCCCACTATTATNNAACCCCCCTANTTGCCNACCCGCAGCCTCTTNNGCACATANCACCATCCCATNATANCAACCAAACANAACCNTACATAACATCACNACACTACACCACACCACCTTACCGCACANCCCGNTAAAANNCCACAACNAACNGACAAACNCCACAAACAACATGGGTGNNGCATNCGCGGCAGCACCNGCCTCANCNACACAAGCCCGGGGGNCGNNTACCCNCACACACAATCACCTANCCACAACACACACTAACCCACCCATCTGGGACGAGCGTACCCACTNGGCCCATGTATNGGGCTACCACCATGGCCGGCACACCACCCCCCCNGATAACNATAAAAAAGTCATACGGGGACGNNTNGCACNGCANCAGGACATNACATTGGGCCTCCACCCTCAGGCGGGCCTCCACCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7361#0 GTCCACGATACTGCCGCGGTGCGCATCCGAATTGTGGCACAGATATCGCAGTCGTCGTTG 60 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 CGAAACCAATATGTGCCCGTTCGGATCGGATATAACCACCGCCAAAATCACCAACATCAT 120 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 CATCACCATCATCGTCATCATCTTGCTCAAATGGCCAAACCAACACGAGAACAACAAAAC 180 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 AAAAACTGTGCCATCGTAAGGCTGGTAGTTACTAGGTGCCACGTAGTTTATC----GTAA 236 consensus_7361#1 ---------------------------------AGATACCCCCGAGTTNAATTTATGTAA 27 ** * ** * **** * **** consensus_7361#0 AGAGACAG-AGCGACCATTTGTATGCTGGCAACATCATGCGACAATACTGGTCGCGTGAA 295 consensus_7361#1 AGAGACAGCAGCGAC-ATTTGTATTCTGGCACCATCATGCGACAATACTGGTCGCGT-AA 85 ******** ****** ******** ****** ************************* ** consensus_7361#0 ATACACACCGTAT-CATGGACATGGGCGCAATAGGCAGAGCAAAGCAAACGTAGT-CGGC 353 consensus_7361#1 ATAAACACCGTATACATGGACATGGGCGCAATAGGCAGAGCAAAGCAAACGTAGTACGGC 145 *** ********* ***************************************** **** consensus_7361#0 TTTCGAAAAGGGGT-CGAACTGCAGTAGGGTAGACAGGATGCT-TAAT-TGCGCACAGCG 410 consensus_7361#1 TTTCGAAAAGGGGTACGAACTG-AGTANGGTAGACAGGATGCTATAATATGCGCACAGTG 204 ************** ******* **** *************** **** ********* * consensus_7361#0 C-GCCCCGTGCTGT--GGCTAGCGAGAACTTTTTTTTCAGTTTAATGACTTATACTGGCA 467 consensus_7361#1 NCGCCCCGTGCTAGTAGGCTAGCGAGAACTTATATTATAG---AAACAGNNATAATAGGA 261 ********** *************** * ** ** ** * *** * * * consensus_7361#0 CCGCCTTTTCTAAAGATGCGCACTATCATAGAATTCACCCGATAGGCTTTCCTAAACCTA 527 consensus_7361#1 CN----TTTATAAAT-TGGGCACCGGCTT----TTTACTAAACAGGCATNGCGCCACCTA 312 * *** **** ** **** * * ** ** * **** * * ***** consensus_7361#0 AGTGCACAAAAGTGAGTCTTTTCATTCGATACCAAAGAGCTTGA-----TTTCTAGTCTA 582 consensus_7361#1 --TACATAAGAANATNTCACCCCTGATAAGGCTANATACCTAACACACCCCTCAAAGGTN 370 * ** ** * ** * * * * * * ** ** * * consensus_7361#0 GAAGTATAATTACATTAAAGCAACATTTTC-GATCTGCGAAAGATACCCGT-----TGCC 636 consensus_7361#1 GGCCCAACACGACAAGTTAGGAAGGTACTCANAGATGCCAANCATACGGANATAAACCCC 430 * * * *** ** ** * ** * *** ** **** ** consensus_7361#0 GGAACGTGGTACTTTCTTTTACCTACTCAAATAC-TGCATGTTTGTAATATACCCTACAC 695 consensus_7361#1 AAACAGAGGCTATGGACTATATTCACTAAAGTNCCTTCAAGCAAACAGATCANTTAACAC 490 * * ** * * ** *** ** * * * ** * * * **** consensus_7361#0 TTTTTTC-TACCGTACGCTGCAGAGTTGCACCTTTACCTTGACGGTTGCATTCTCTTAAA 754 consensus_7361#1 TNTAAACATATTAAACACAGACACANACCACATATANNACTCCGGCCA-GCTCACTAGGC 549 * * * ** ** * * *** * ** *** ** ** consensus_7361#0 AAAACTATAAAAATCAAAACTACTACTAGCAATAGCAACAAAATGGGCAGCGACAAAATA 814 consensus_7361#1 GGNACAACCGNAATAANACCCCCGGNTAGACACCGGGGGAAAACGGT--ATGGGNNANCC 607 ** * *** * * * * *** * * **** ** * * consensus_7361#0 AGCGGGTTTCAGAAAATCTTAGAAACTAGACATTGTTGATACATGCATGTGGTAATGCGA 874 consensus_7361#1 CGTTATNTCCCTATATTAATANAACCCACCTTNAANCTCCCAAAATAAATAACCTTAGGG 667 * * * * * * ** ** * * * * * * * consensus_7361#0 CAATTCTTAGATAAATTTGGAATATAAAATTTG-TATCTGCTCATCTGTG-TCAAATATC 932 consensus_7361#1 CNAACATTGGGCTAATACGGGATACAACANAAACTNANTACCCCCCCCCACTCTACNACC 727 * * ** * *** ** *** ** * * * * * * ** * * * consensus_7361#0 AGGTACCAGTG-GGTACATGCGCAAAAGAGGAAGGACAATTAAAAGCAAATACTTCAATA 991 consensus_7361#1 ATTCATAAATATAATACCTAAAACCNCNGCTAACCACACCCTTTGCCNCACGAACCAACA 787 * * * * *** * ** *** * * *** * consensus_7361#0 TT-TCATCAATCTT-GTCATAATACAGCGTCATAAAATTTTGAAACATGTTTACTTAAGT 1049 consensus_7361#1 CNATTGGCACCCCCCACTATTATNNAACCCCCCTANTTGCCNACCCGCAGCCTCTTNNGC 847 * ** * ** ** * * * * * * * *** * consensus_7361#0 GTAGTGAACCGG--------AAGGTTTGAAAAAAAACACGCATA-TATCAATCCACTCAA 1100 consensus_7361#1 ACATANCACCATCCCATNATANCAACCAAACANAACCNTACATAACATCACNACACTACA 907 * *** * ** * ** * **** **** **** * consensus_7361#0 TAACTGACCAGTAATAAACATACGTGTA---CGTTTTGAACATTGCGTGATTGTGACGAA 1157 consensus_7361#1 CCACACCACCTTACCGCACANCCCGNTAAAANNCCACAACNAACNGACAAACNCCACAAA 967 ** * ** *** * ** * * * ** ** consensus_7361#0 GAATATCGCTCCCGT-TCCG-------ACCGTGTAAAATTGCACACACGCGTGTGTGGTG 1209 consensus_7361#1 CAACATGGGTGNNGCATNCGCGGCAGCACCNGCCTCANCNACACAAGCCCGGGGGNCGNN 1027 ** ** * * * * ** *** * **** * ** * * * consensus_7361#0 TGTCCTGTTTTAGGATTTTGTTGGCAATAGTATACATCGTATGGTTGATATTAGCAGAAT 1269 consensus_7361#1 TACCCNCACACACAATCAC-CTANCCACAACACACACTAACCCACCCATCTGGGACGAGC 1086 * ** * ** * * * * * *** ** * * ** consensus_7361#0 CCAAGCCCAATGTATCTAGACAAGGTAA--ACCGTTTCAAATACAACACCTCG------- 1320 consensus_7361#1 GTACCCACTNGGCCCATGTATNGGGCTACCACCATGGCCGGCACACCACCCCCCCNGATA 1146 * * * * * * ** * *** * * *** **** * consensus_7361#0 ------------------------------------------------------------ consensus_7361#1 ACNATAAAAAAGTCATACGGGGACGNNTNGCACNGCANCAGGACATNACATTGGGCCTCC 1206 consensus_7361#0 ----------------------- consensus_7361#1 ACCCTCAGGCGGGCCTCCACCCG 1229 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||