Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 7368 cluster # 7368       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7368#0 length = 622 sequences # 6  
consensus_7368#1 length = 617 sequences # 1  

consensusID : consensus_7368#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 622
fasta sequence
                              [CCGCCCACGCGTCCGAGCGCCAGCAAGTCACTGTATTTCGTTACCGCCCTGCAGTAAATAGTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCGCCGTTCTGGCCGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAAGGAGGGAAACTAAGCAAAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATTTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTCTGCGAGCAACAGTACACCACCACCTTCACCCAATAAAAGCTGTGACCTGAGCTGTGTTTTTTCAATGATAGCCCAATGAAAAAACCAGTACACTATTTTAC]

[+] EMBL BM633163             [CCGCCCACGCGTCCGAGCGCCAGCAAGTCACTGTATTTCGTTACCGCCCTGCAGTAAATAGTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCGCCGTTCTGGCCGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAAGGAGGGAAACTAAGCAAAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATTTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTCTGCGAGCAACAGTACACCACCACCTTCACCCAATAAAAGCTGTGACCTGAGCTGTGTTTTTTCAATGATAGCCCAATGAAAAAACCAGTACACTATTTTAC]
[+] EMBL BM644210             [      cCGCGT   AGCGCCAACAAGTCACTGTATTTCGTTACCACCCTGCAGTAAATAGTGCAAAAAAAC CCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCGCCGTTCTGGCCGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACCTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTTTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAAGGAGGGAAACTAAACAAAGGA      TCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATTTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGGTAATGAAACATGCTGC                                                                                                  ]
[+] EMBL BM626562             [                   CCGGCAAGTCACTGTATTTCGTTACCGCCCTGCAGTAAATAGTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCGCCGTTCTGGCCGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAAGGAGGGAAACTAAGCAAAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATTTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTCTGCGAGCAACAGTACACCACCACCTTCACCCAATAAAAGCTGTGACCTGAGCTGTGTTTTTTCAATGATAGCCCAATGAAAAAACCAGTACACTATTTTAC]
[+] EMBL BM634698             [                                   ccgCGTTACCACCCTGCAGTAAATAGTGCAAAAAAAC CCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCGCCGTTCTGGGCGGCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACCTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTTTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAAGGAGGGAAACTAAACAAAGGA      TCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATTTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATGCTGCGAGCAACAGTACACCACCACCTTCACTCAATAAAAGCTGTGACCTGAGCTGTGTTTTTT                                       ]
[+] EMBL BM644823             [                                    ccgGTTACCGCCCTGCAGTAAATAGTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCGCCGTTCTGGCCGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAAGGAGGGAAACTAAGCAAAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATTTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTCTGCGAGCAACAGTACACCACCACCTTCACCCAATAAAAGCTGTGACCTGAGCTGTGTTTTTTCAATGATAGCCCAATGAAAAAACCAGTACACTATTTTAC]
[+] EMBL BM640725             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ccgGGTTAATGAAACATTCTGCGAGCAACAGTACACCACCACCTTCACCCAATAAAAGCTGTGACCTGAGCTGTGTTTTTTCAATGATAGCCCAATGAAAAAACCAGTACACTATTTTAC]


>consensus_7368#0 CCGCCCACGCGTCCGAGCGCCAGCAAGTCACTGTATTTCGTTACCGCCCTGCAGTAAATA GTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCGCCGTTCTGGC CGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGA TAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCGCGC CGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTC GTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAA CGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAAGGAGGGAAACTAAGCAAAGG ATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATTTCCCAAA CACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTCTGCGAGCAACAGTACACCA CCACCTTCACCCAATAAAAGCTGTGACCTGAGCTGTGTTTTTTCAATGATAGCCCAATGA AAAAACCAGTACACTATTTTAC



consensusID : consensus_7368#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 617
fasta sequence
                              [TCCCCCGAGTTAGTCACTGTATTTCGTTACGCCCTGCAGTAAATAGTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCTGCCGTTCTGGCCTGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCTGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAACGGAGGGAAACTAAGCAAAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATATTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTACTGCGCACACAACAGATACACCACCACCTTCACCCAATAAAACCTGCTCGACCCTGACCCTGTGTCNCACATCAACTGATAGCCCAACTGNAAAAAAAACCAATAA]

[+] EMBL AL934751             [TCCCCCGAGTTAGTCACTGTATTTCGTTACGCCCTGCAGTAAATAGTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCTGCCGTTCTGGCCTGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCTGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAACGGAGGGAAACTAAGCAAAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATATTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTACTGCGCACACAACAGATACACCACCACCTTCACCCAATAAAACCTGCTCGACCCTGACCCTGTGTCNCACATCAACTGATAGCCCAACTGNAAAAAAAACCAATAA]


>consensus_7368#1 TCCCCCGAGTTAGTCACTGTATTTCGTTACGCCCTGCAGTAAATAGTGCAAAACCCCACC TCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCTGCCGTTCTGGCCTGTCGCTCTTGCC GCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACTTGGGTGTC GATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCTGCGCCGAGACGGCCGA GCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACAC CGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCC GGAAGCTCCCCATATCCCGCGCCTGTAACGGAGGGAAACTAAGCAAAGGATCTCTCTCTC TCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATATTCCCAAACACTTCTCTG TTATTAGCTTGTTAAGGTTAATGAAACATTACTGCGCACACAACAGATACACCACCACCT TCACCCAATAAAACCTGCTCGACCCTGACCCTGTGTCNCACATCAACTGATAGCCCAACT GNAAAAAAAACCAATAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7368#0      CCGCCCACGCGTCCGAGCGCCAGCAAGTCACTGTATTTCGTTACCGCCCTGCAGTAAATA 60
consensus_7368#1      -----------TCC---CCCGAGTTAGTCACTGTATTTCGTTAC-GCCCTGCAGTAAATA 45
                                 ***   * * **  ******************* ***************

consensus_7368#0      GTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCC-GCCGTTCTGG 119
consensus_7368#1      GTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCTGCCGTTCTGG 105
                      ************************************************* **********

consensus_7368#0      CC-GTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAAC 178
consensus_7368#1      CCTGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAAC 165
                      ** *********************************************************

consensus_7368#0      GATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACC-G 237
consensus_7368#1      GATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCTG 225
                      ********************************************************** *

consensus_7368#0      CGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGG 297
consensus_7368#1      CGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGG 285
                      ************************************************************

consensus_7368#0      CTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGA 357
consensus_7368#1      CTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGA 345
                      ************************************************************

consensus_7368#0      GAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAA-GGAGGGAAACTAAGCA 416
consensus_7368#1      GAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAACGGAGGGAAACTAAGCA 405
                      ******************************************* ****************

consensus_7368#0      AAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTAT-TTC 475
consensus_7368#1      AAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATATTC 465
                      ******************************************************** ***

consensus_7368#0      CCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATT-CTGCGAGCA--ACA 532
consensus_7368#1      CCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTACTGCGCACACAACA 525
                      ********************************************* *****  **  ***

consensus_7368#0      G-TACACCACCACCTTCACCCAATAAAAGCTGT--GACCTGAGCTGTGTTTTT----TCA 585
consensus_7368#1      GATACACCACCACCTTCACCCAATAAAACCTGCTCGACCCTGACCCTGTGTCNCACATCA 585
                      * ************************** ***   ****    *  *** *      ***

consensus_7368#0      A-TGATAGCCCAATGAAAAAACCAGTACACTATTTTAC 622
consensus_7368#1      ACTGATAGCCCAACTGNAAAAAAAACCAATAA------ 617
                      * ***********    ****  *    *  *      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)