These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7368#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 622 fasta sequence [CCGCCCACGCGTCCGAGCGCCAGCAAGTCACTGTATTTCGTTACCGCCCTGCAGTAAATAGTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCGCCGTTCTGGCCGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAAGGAGGGAAACTAAGCAAAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATTTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTCTGCGAGCAACAGTACACCACCACCTTCACCCAATAAAAGCTGTGACCTGAGCTGTGTTTTTTCAATGATAGCCCAATGAAAAAACCAGTACACTATTTTAC] [+] EMBL BM633163 [CCGCCCACGCGTCCGAGCGCCAGCAAGTCACTGTATTTCGTTACCGCCCTGCAGTAAATAGTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCGCCGTTCTGGCCGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAAGGAGGGAAACTAAGCAAAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATTTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTCTGCGAGCAACAGTACACCACCACCTTCACCCAATAAAAGCTGTGACCTGAGCTGTGTTTTTTCAATGATAGCCCAATGAAAAAACCAGTACACTATTTTAC] [+] EMBL BM644210 [ cCGCGT AGCGCCAACAAGTCACTGTATTTCGTTACCACCCTGCAGTAAATAGTGCAAAAAAAC CCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCGCCGTTCTGGCCGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACCTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTTTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAAGGAGGGAAACTAAACAAAGGA TCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATTTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGGTAATGAAACATGCTGC ] [+] EMBL BM626562 [ CCGGCAAGTCACTGTATTTCGTTACCGCCCTGCAGTAAATAGTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCGCCGTTCTGGCCGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAAGGAGGGAAACTAAGCAAAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATTTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTCTGCGAGCAACAGTACACCACCACCTTCACCCAATAAAAGCTGTGACCTGAGCTGTGTTTTTTCAATGATAGCCCAATGAAAAAACCAGTACACTATTTTAC] [+] EMBL BM634698 [ ccgCGTTACCACCCTGCAGTAAATAGTGCAAAAAAAC CCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCGCCGTTCTGGGCGGCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACCTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTTTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAAGGAGGGAAACTAAACAAAGGA TCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATTTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATGCTGCGAGCAACAGTACACCACCACCTTCACTCAATAAAAGCTGTGACCTGAGCTGTGTTTTTT ] [+] EMBL BM644823 [ ccgGTTACCGCCCTGCAGTAAATAGTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCGCCGTTCTGGCCGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAAGGAGGGAAACTAAGCAAAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATTTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTCTGCGAGCAACAGTACACCACCACCTTCACCCAATAAAAGCTGTGACCTGAGCTGTGTTTTTTCAATGATAGCCCAATGAAAAAACCAGTACACTATTTTAC] [+] EMBL BM640725 [ ccgGGTTAATGAAACATTCTGCGAGCAACAGTACACCACCACCTTCACCCAATAAAAGCTGTGACCTGAGCTGTGTTTTTTCAATGATAGCCCAATGAAAAAACCAGTACACTATTTTAC] consensusID : consensus_7368#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [TCCCCCGAGTTAGTCACTGTATTTCGTTACGCCCTGCAGTAAATAGTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCTGCCGTTCTGGCCTGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCTGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAACGGAGGGAAACTAAGCAAAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATATTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTACTGCGCACACAACAGATACACCACCACCTTCACCCAATAAAACCTGCTCGACCCTGACCCTGTGTCNCACATCAACTGATAGCCCAACTGNAAAAAAAACCAATAA] [+] EMBL AL934751 [TCCCCCGAGTTAGTCACTGTATTTCGTTACGCCCTGCAGTAAATAGTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCTGCCGTTCTGGCCTGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCTGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAACGGAGGGAAACTAAGCAAAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATATTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTACTGCGCACACAACAGATACACCACCACCTTCACCCAATAAAACCTGCTCGACCCTGACCCTGTGTCNCACATCAACTGATAGCCCAACTGNAAAAAAAACCAATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7368#0 CCGCCCACGCGTCCGAGCGCCAGCAAGTCACTGTATTTCGTTACCGCCCTGCAGTAAATA 60 consensus_7368#1 -----------TCC---CCCGAGTTAGTCACTGTATTTCGTTAC-GCCCTGCAGTAAATA 45 *** * * ** ******************* *************** consensus_7368#0 GTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCC-GCCGTTCTGG 119 consensus_7368#1 GTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCTGCCGTTCTGG 105 ************************************************* ********** consensus_7368#0 CC-GTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAAC 178 consensus_7368#1 CCTGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAAC 165 ** ********************************************************* consensus_7368#0 GATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACC-G 237 consensus_7368#1 GATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCTG 225 ********************************************************** * consensus_7368#0 CGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGG 297 consensus_7368#1 CGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGG 285 ************************************************************ consensus_7368#0 CTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGA 357 consensus_7368#1 CTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGA 345 ************************************************************ consensus_7368#0 GAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAA-GGAGGGAAACTAAGCA 416 consensus_7368#1 GAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAACGGAGGGAAACTAAGCA 405 ******************************************* **************** consensus_7368#0 AAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTAT-TTC 475 consensus_7368#1 AAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATATTC 465 ******************************************************** *** consensus_7368#0 CCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATT-CTGCGAGCA--ACA 532 consensus_7368#1 CCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTACTGCGCACACAACA 525 ********************************************* ***** ** *** consensus_7368#0 G-TACACCACCACCTTCACCCAATAAAAGCTGT--GACCTGAGCTGTGTTTTT----TCA 585 consensus_7368#1 GATACACCACCACCTTCACCCAATAAAACCTGCTCGACCCTGACCCTGTGTCNCACATCA 585 * ************************** *** **** * *** * *** consensus_7368#0 A-TGATAGCCCAATGAAAAAACCAGTACACTATTTTAC 622 consensus_7368#1 ACTGATAGCCCAACTGNAAAAAAAACCAATAA------ 617 * *********** **** * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||