These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7369#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 950 fasta sequence [CCGCACGGACACGATGACCACGCCGAGCAGCAGCAGCAGCATCTCCACATCCAACCAGCTGGCGGCAGACGATTCCGAAGAAACGACGGCAACGACGAACACCACCAGCACCGCCGGTAACACGACCAGCAGTTCCGCGACGGAAAACATCCACTCGATGACGGCTGACGAGCTGTGGCAGCATTACGACGCGACGCGCGAAGAGAAGAAGGAGCTGCGCCGCACGATCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAAGATGCTGAAATCGGACCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCTGATCGATGCGCTCTTTAAGAAGCAAATGCAAGCCGTCTAGGGGCCGGGAGCGCCTGGGTGCTGCGGTCGTGCGGGATTTGAACGATGCCGGGCCGGTTTTGGTATTATTGTTTTGAAGTTTATGTCGGCAAAAGACCATGTTGATGTCGTATGTTGATTTTGATGATCATAACACGCTGTTGTCTTGCGCAGCTGCCGATCCTCGCACGAGAAGAAGAACAACCCCTGTCGAAAACAGTCGGCAAACGAGAAAAATAACGAACCGAACGCGTACCCAAAAGTGAAAACTTAATCAAAAACACGAATCTTTTCCGGCAATCCGCCGACGAACGGGCTTTTTAAGGATATATTACATGCACGGTGGTGCGCGGATGTTACAGCTCGTGCTTTTCGTTTTCGTTTTGCTGATCGGTTCAGTTCTGCTGCTGCACTATTATCACTGTTCATTAATTGTATCGCAAAGCAGATGAGAAGCTAGAATATCGAAGAAGGCATTGAAAATGCGAAATAGTTGGTAGGATTACACAAACACATAAAACACATACACACACACACACTGTTGGCAGGAAAGAAACTTTCTAAGCTCAACGCACACACACACACAC] [+] EMBL BM594746 [CCGCACGGACACGATGACCACGCCGAGCAGCAGCAGCAGCATCTCCACATCCAACCAGCTGGCGGCAGACGATTCCGAAGAAACGACGGCAACGACGAACACCACCAGCACCGCCGGTAACACGACCAGCAGTTCCGCGACGGAAAACATCCACTCGATGACGGCTGACGAGCTGTGGCAGCATTACGACGCGACGCGCGAAGAGAAGAAGGAGCTGCGCCGCACGATCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAAGATGCTGAAATCGGACCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCTGATCGATGCGCTCTTTAAGAAGCAAATGCAAGCCGTCTAGGGGCCGGGAGCGCCTGGGTGCTGCGGTCGTGCGGGATTTGAACGATGCCGGGCCGGTTTTGGTATTATTGTTTTGAAGTTTATGTCGGCAAAAGACCATGTTGATGTCGTATGTTGATTTTGATGATCATAACACGCTGTTGTCTTGCGCAGCTGCCGATCCTCGCACGAGAAGAAGAACAACCCCTGTCGAAAACAGTCGGCAAACGAGAAAAATAACGAACCGAACGCGTACCCAAAAGTGAAAACTTAATCAAAAACACGAATCTTTTCCGGCAA ] [+] EMBL BM630191 [ ccgAACGACGAACACCACCAGCACCGCCGGTAACACGACCAGCAGTTCCGCGACGGAAAACATCCACTCGATGACGGCTGACGAGCTGTGGCAGCATTACGACGCGACGCGCGAAGAGAAGAAGGAGCTGCGCCGCACGATCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAAGATGCTGAAATCGGACCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCTGATCGATGCGCTCTTTAAGAAGCAAATGCAAGCCGTCTAGGGGCCGGGAGCGCCTGGGTGCTGCGGTCGTGCGGGATTTGAACGATGCCGGGCCGGTTTTGGTATTATTGTTTTGAAGTTTATGTCGGCAAAAGACCATGTTGATGTCGTATGTTGATTTTGATGATCATAACACGCTGTTGTCTTGCGCAGCTGCCGATCCTCGCACGAGAAGAAGAACAACCCCTGTCGAAAACAGTCGGCAAACGAGAAAAATAACGAACCGAACGCGTACCCAAAAGTGAAAACTTAATCAAAAACACGAATCTTTTCCGGCAATCCGCCGACGAACGGGCTTTTTAAGGATATATTACATGCACGGTGGTGCGCGGATGTTACAGCTCGTGCTTTTCGTTTTCGTTTTGCTGATCGGTTCAGTTCTGC ] [+] EMBL BM606237 [ ccgCGGAAAACATCCACTCGATGACGGCTGACGAGCTGTGGCAGCATTACTACGCGACGCGCGAAGAGAACAAGGAGCTGCGCCGCACGATCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAAGATGCTGAAATCGGACCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCTGATCGATGCGCTCTTTAAGAAGCAAATGCAAGCCGTCTAGGGGCCGGGAGCGCCTGGGTGCTGCGGTCGTGCGGGATTTGAACGATGCCGGGCCGGTTTTGGTATTATTGTTTTGAAGTTTATGTCGGCAAAAGACCATGTTGATGTCGTATGTTGATTTTGATGATCATAACACGCTGTTGTCTTGCGCAGCTGCCGATCCTCGCACGAGAAGAAGAACAACCCCTGTCGAAAACAGTCGGCAAACGAGAAAAATAACGAACCGAACGCGTACCCAAAAGTGAAAACTTAATCAAAAACACGAATCTTTTCCGGCAATCCGCCGACGAACGG ] [+] EMBL BX607754 [ GCGACGCGCGAAGAGAAGAAGGAGCTGCGCCGCACGATCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAAGATGCTGAAATCGGACCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCTGATCGATGCGCTCTTTAAGAAGCAAATGCAAGCCGTCTAGGAGCCGGTAGCGCCTGGGTGCTGCGGTCGTGCGGGATTTGAACGATGCCGGGCCGGTTTTGGTATTATTGTTTTGTAGTTTATGCCGGCAAAAGACCATGTTGATGTCGTATGTTGATTTTGATGATTACAACACGCTGTTGTCTTGCGCAGCTGCCGATCCTCGCACGAGAAGAAGAACGACCCCTGTCGAAAACAGTCGGCAAACGAGAAAAATAACGAACCGAACGCGTACCCAAAAGTGAAAACTTAATCAAAAACACGAATCTTTTCCTGCAATGCGCCGACGAACGGGCTTTTTAAGGATATGTTACATGCACGGTGGTGCGCGGTTGTTACAGCTCGTGCTTTTCGTTTTCGTTTTGCTGATCGTTTCAGTTCTGTTGCTGCACTATTATCACTGTTCATTAATTGTATCGCAAAGCAGATGAGAAGCTAGAATATCGAAGAAGGCATTGAAAATGCGAAATAGTTGGTAGGATTACACAAACACATAAAACACATACACACACACACACTGTTGGCAGGAAAGAAACTTTCTAAGCTCAACGCACACACACACACAC] consensusID : consensus_7369#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [CCGACCACACCGTCCACCGATATCTCGCCGCCGTCGGCCACCTCCATGCTGCAGTCGCCCACGGACACGATGACCACGCCGAGCAGCAGCAGCAGCATCTCCACATCCAACCAGCTGCCGGCGGCAGACGATTCCGAAGAAACGACGGCAACGACGAACACAACCACCAGCACCGCCGGCAACACGACCAGCAGTTCCGCGACGGAAAAGATCCACTCGATGACGGCGGACGAGCTGTGGCAGCATTACGACGCGACGCGTGAAGAGAAGAAGGAGCTGCGCCGCACGATCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAAGATGCTGAAATCGGACCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCTGATCGATGCGCTCTTTAAGAAGCAAATGCAAGCCGTCTAGGAGCCGGGAGCGCCTGGGTGCTGCGGTCGTGCGGGATTTGAACGATGCCGGGCCGGTTTTGGTATTATTGTTTTGTAGTTTATGCCGGCAAAAGACCATGTTGATGTCGTATGTTGATTTTGAAGATCATAACACGCTGTTGTCTTGCGCAGCTGCCGATCCTCGCACGAGAAGACGAACAACCGTCGGCAAAGGAGAAAAATAACGAACCGAACACGTACCCAAAAGTGAAAACTTAATCAAAA] [+] EMBL BM643352 [CCGACCACACCGTCCACCGATATCTCGCCGCCGTCGGCCACCTCCATGCTGCAGTCGCCCACGGACACGATGACCACGCCGAGCAGCAGCAGCAGCATCTCCACATCCAACCAGCTGCCGGCGGCAGACGATTCCGAAGAAACGACGGCAACGACGAACACAACCACCAGCACCGCCGGCAACACGACCAGCAGTTCCGCGACGGAAAAGATCCACTCGATGACGGCGGACGAGCTGTGGCAGCATTACGACGCGACGCGTGAAGAGAAGAAGGAGCTGCGCCGCACGATCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAAGATGCTGAAATCGGACCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCTGATCGATGCGCTCTTTAAGAAGCAAATGCAAGCCGTCTAGGAGCCGGGAGCGCCTGGGTGCTGCGGTCGTGCGGGATTTGAACGATGCCGGGCCGGTTTTGGTATTATTGTTTTGTAGTTTATGCCGGCAAAAGACCATGTTGATGTCGTATGTTGATTTTGAAGATCATAACACGCTGTTGTCTTGCGCAGCTGCCGATCCTCGCACGAGAAGACGAACAACCGTCGGCAAAGGAGAAAAATAACGAACCGAACACGTACCCAAAAGTGAAAACTTAATCAAAA] consensusID : consensus_7369#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence [CCGCAAAAACACGAATCTTTTCCTGCAATGCGCCGACGAACGGGCTTTTTAAGGATATTACATGCACGGTGGTGCGCGGTTGTTACAGCTTGTGCTTTTCGTTTTCGTTTTGCTGATCGTTTCAGTTCTGCTTCTTCTTCTTTCTGCCTAACACTAGCGGGAGCGGTTGCTACACCAGTTGCTGCACTATTATCACTGTTCATTAATTGTATCGCAAAGCAGATGAGAAGCTAGAATATCGAAGAAGGCATTGAAAATGCGAAATAGGTAGTAGGATTACACAAACACAAAAACACATACACACACACACACTGTTGGCAGGAAAGAAACTTTCTAAGCTCAACACACACACATACACTCACATATATACACAAGCAAACCGATGGTTGGCAAACAATTAGACTGCTGCTGTTGTTGGTTTTAAACACAATATTATGTTATTTTCATCGGTTCGTTAGTTTTTCCGTAAGTTTGGAATG] [+] EMBL BM601975 [CCGCAAAAACACGAATCTTTTCCTGCAATGCGCCGACGAACGGGCTTTTTAAGGATATTACATGCACGGTGGTGCGCGGTTGTTACAGCTTGTGCTTTTCGTTTTCGTTTTGCTGATCGTTTCAGTTCTGCTTCTTCTTCTTTCTGCCTAACACTAGCGGGAGCGGTTGCTACACCAGTTGCTGCACTATTATCACTGTTCATTAATTGTATCGCAAAGCAGATGAGAAGCTAGAATATCGAAGAAGGCATTGAAAATGCGAAATAGGTAGTAGGATTACACAAACACAAAAACACATACACACACACACACTGTTGGCAGGAAAGAAACTTTCTAAGCTCAACACACACACATACACTCACATATATACACAAGCAAACCGATGGTTGGCAAACAATTAGACTGCTGCTGTTGTTGGTTTTAAACACAATATTATGTTATTTTCATCGGTTCGTTAGTTTTTCCGTAAGTTTGGAATG] consensusID : consensus_7369#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [GAATGCCCCGAGGGTNAGAAACGACGGCACGACGAACACCACCAGCACCGCCGGTAACACGACCAGCAGTTCCGCGACGGAAAACATCCACTCGATGACGGCTGACGAGCTGTGGCAGCATTACGACGCGACGCGCGAAGAGAAGAAGGAGCTGCGCCGCACGATCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAAGATGCTGAAATCGGACCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCTGATCGATGCGCTCTTTAAGAAGCAAATGCAAGCCGTCTAGGGGCCGGGCAGCGCCTGGGTGCTGCGGCTCGTGCGGGCATTTGAACGCATGCCGGGCCGGTTT] [+] EMBL AL934784 [GAATGCCCCGAGGGTNAGAAACGACGGCACGACGAACACCACCAGCACCGCCGGTAACACGACCAGCAGTTCCGCGACGGAAAACATCCACTCGATGACGGCTGACGAGCTGTGGCAGCATTACGACGCGACGCGCGAAGAGAAGAAGGAGCTGCGCCGCACGATCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAAGATGCTGAAATCGGACCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCTGATCGATGCGCTCTTTAAGAAGCAAATGCAAGCCGTCTAGGGGCCGGGCAGCGCCTGGGTGCTGCGGCTCGTGCGGGCATTTGAACGCATGCCGGGCCGGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7369#1 CCGACCACACCGTCCACCGATATCTCGCCGCCGTCGGCCACCTCCATGCTGCAGTCGCCC 60 consensus_7369#3 ------------------------------------------------------------ consensus_7369#0 --------------------------------------------------------CCGC 4 consensus_7369#2 ------------------------------------------------------------ consensus_7369#1 ACGGACACGATGACCACGCCGAGCAGCAGCAGCAGCATCTCCACATCCAACCAGCTGCCG 120 consensus_7369#3 ----------------------------------------------------GAATGCC- 7 consensus_7369#0 ACGGACACGATGACCACGCCGAGCAGCAGCAGCAGCATCTCCACATCCAACCAGCTGGCG 64 consensus_7369#2 ------------------CCGCAAAAACACGAATCTTTTCCTGCAATGCGCCGACGAACG 42 * consensus_7369#1 GCGG--CAGACGATTCCGAAGAAACGACGGCAA-CGACGAACACAAC----CACCAGCAC 173 consensus_7369#3 ------CCGAGGGTN----AGAAACGACGGCA--CGACGAACAC-------CACCAGCAC 48 consensus_7369#0 G-----CAGACGATTCCGAAGAAACGACGGCAA-CGACGAACAC-------CACCAGCAC 111 consensus_7369#2 GGCTTTTTAAGGATATTACATGCACGGTGGTGCGCGGTTGTTACAGCTTGTGCTTTTCGT 102 * * * * *** ** ** ** * consensus_7369#1 CGCCGGCAACACGACCAG--CAGTTCCGCGACGGAAAAGATCCACTCGATGACGGCGGAC 231 consensus_7369#3 CGCCGGTAACACGACCAG--CAGTTCCGCGACGGAAAACATCCACTCGATGACGGCTGAC 106 consensus_7369#0 CGCCGGTAACACGACCAG--CAGTTCCGCGACGGAAAACATCCACTCGATGACGGCTGAC 169 consensus_7369#2 TTTCGTTTTGCTGATCGTTTCAGTTCTGCTTCTTCTTCTTTCTGCCTAACACTAGCGGGA 162 ** ** * ****** ** * ** * * ** * consensus_7369#1 G-AGCTGTGGCAGCA-TTACGACGCGACGCGTGAAGAGAAGAAGGAGCTGCGCCGCACGA 289 consensus_7369#3 G-AGCTGTGGCAGCA-TTACGACGCGACGCGCGAAGAGAAGAAGGAGCTGCGCCGCACGA 164 consensus_7369#0 G-AGCTGTGGCAGCA-TTACGACGCGACGCGCGAAGAGAAGAAGGAGCTGCGCCGCACGA 227 consensus_7369#2 GCGGTTGCTACACCAGTTGCTGCACTATTATCACTGTTCATTAATTGTATCGCAAAGCAG 222 * * ** ** ** ** * * * * * * * * *** * consensus_7369#1 TCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAA--GATGCTGAAATCGGA 347 consensus_7369#3 TCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAA--GATGCTGAAATCGGA 222 consensus_7369#0 TCAAGGACTTTGAGCAGCAGTTCGAGGAGACGACCGGGCGCAA--GATGCTGAAATCGGA 285 consensus_7369#2 ATGAGAAGCTAGAATATCGAAG-AAGGCATTGAAAATGCGAAATAGGTAGTAGGATTACA 281 ** * * ** * * *** ** *** ** * * * ** * consensus_7369#1 CCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCT 407 consensus_7369#3 CCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCT 282 consensus_7369#0 CCGCAAATCGATCGAGGACACGTACGCTCTCTACAAGCAGAAGAAGGCCAAGCTGCGGCT 345 consensus_7369#2 CAAACACAAAAACACATACACACACACACACTGTTGGCAGGAAAGAAACTTTCTAAGCTC 341 * * * * **** ** * * ** **** * * * ** * consensus_7369#1 GATCGATGCGCT--CTTTAAGAAGCAAATGCAAGCCGTCTAGGAGCCGGG-AGCGCCTGG 464 consensus_7369#3 GATCGATGCGCT--CTTTAAGAAGCAAATGCAAGCCGTCTAGGGGCCGGGCAGCGCCTGG 340 consensus_7369#0 GATCGATGCGCT--CTTTAAGAAGCAAATGCAAGCCGTCTAGGGGCCGGG-AGCGCCTGG 402 consensus_7369#2 AACACACACACATACACTCACATATATACACAAGCAAACCGATGGTTGGCAAACAATTAG 401 * * * * * * * * * * ***** * * ** * * * * consensus_7369#1 GTGCTGCGG-TCGTGCGGG-ATTTGAACG--ATGCCGGGCCGGTTTTGGTATTATTGTTT 520 consensus_7369#3 GTGCTGCGGCTCGTGCGGGCATTTGAACGC-ATGCCGGGCCGGTTT-------------- 385 consensus_7369#0 GTGCTGCGG-TCGTGCGGG-ATTTGAACG--ATGCCGGGCCGGTTTTGGTATTATTGTTT 458 consensus_7369#2 A--CTGCTGCTGTTGTTGG-TTTTAAACACAATATTATGTTATTTTC------ATCGGTT 452 **** * * ** ** *** *** ** * *** consensus_7369#1 TGTAGTTTATGCCGGCAAAAGACCATGTTGATGTCGTATGTTGATTTTGAAGATCATAAC 580 consensus_7369#3 ------------------------------------------------------------ consensus_7369#0 TGAAGTTTATGTCGGCAAAAGACCATGTTGATGTCGTATGTTGATTTTGATGATCATAAC 518 consensus_7369#2 CGTTAGTTTTTCCGTAAGTTTGGAATG--------------------------------- 479 consensus_7369#1 ACGCTGTTGTCTTGCGCAGCTGCCGATCCTCGCACGAGAAGACGAACAACC--------- 631 consensus_7369#3 ------------------------------------------------------------ consensus_7369#0 ACGCTGTTGTCTTGCGCAGCTGCCGATCCTCGCACGAGAAGAAGAACAACCCCTGTCGAA 578 consensus_7369#2 ------------------------------------------------------------ consensus_7369#1 ----GTCGGCAAAGGAGAAAAATAACGAACCGAACACGTACCCAAAAGTGAAAACTTAAT 687 consensus_7369#3 ------------------------------------------------------------ consensus_7369#0 AACAGTCGGCAAACGAGAAAAATAACGAACCGAACGCGTACCCAAAAGTGAAAACTTAAT 638 consensus_7369#2 ------------------------------------------------------------ consensus_7369#1 CAAAA------------------------------------------------------- 692 consensus_7369#3 ------------------------------------------------------------ consensus_7369#0 CAAAAACACGAATCTTTTCCGGCAATCCGCCGACGAACGGGCTTTTTAAGGATATATTAC 698 consensus_7369#2 ------------------------------------------------------------ consensus_7369#1 ------------------------------------------------------------ consensus_7369#3 ------------------------------------------------------------ consensus_7369#0 ATGCACGGTGGTGCGCGGATGTTACAGCTCGTGCTTTTCGTTTTCGTTTTGCTGATCGGT 758 consensus_7369#2 ------------------------------------------------------------ consensus_7369#1 ------------------------------------------------------------ consensus_7369#3 ------------------------------------------------------------ consensus_7369#0 TCAGTTCTGCTGCTGCACTATTATCACTGTTCATTAATTGTATCGCAAAGCAGATGAGAA 818 consensus_7369#2 ------------------------------------------------------------ consensus_7369#1 ------------------------------------------------------------ consensus_7369#3 ------------------------------------------------------------ consensus_7369#0 GCTAGAATATCGAAGAAGGCATTGAAAATGCGAAATAGTTGGTAGGATTACACAAACACA 878 consensus_7369#2 ------------------------------------------------------------ consensus_7369#1 ------------------------------------------------------------ consensus_7369#3 ------------------------------------------------------------ consensus_7369#0 TAAAACACATACACACACACACACTGTTGGCAGGAAAGAAACTTTCTAAGCTCAACGCAC 938 consensus_7369#2 ------------------------------------------------------------ consensus_7369#1 ------------ consensus_7369#3 ------------ consensus_7369#0 ACACACACACAC 950 consensus_7369#2 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||