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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7370#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1164 fasta sequence
[CATTGGTGCTGATTCAAATCGTTGCGTTTTTTGTATGTACCATCTACATATACAATGCCGAATAATAGTCGAAGCATAAAGCGGGCATGCACAAGTTTAACGAAAATGATAGGGCGAACCTTTGTAACTACGGGACGATACGAAGTGCAGAGGAAAGCGAAACACCGATAGATGGTTAGAGTGTATTAACTTAACGACAAACTAAGTATAGGTGCATTTCATTTGCATTAGCCGTTTATTATTATGATTGTAGTAATTAGTTTTATGTTTAATTCGTACTCTGCTATCTAAGCGACATACACCACCTTGAAAAAAGCTCGAATTGAACGCAATTCAATTAGCAGCAAACACTTGAACGCTACCGTACACTCTCCGTGGGAAGCCAATGGGCAAATGCGCAGGTGTCACACAGGTCGAGGCCAACCTTCTGACAACGGTTGTGCCAAAAACCATTTACAAAGGAAGCAGTTTGGTCCGTTTTATTGCAACGTTGTGTGTGGCCATTATCATAAGCCTACATTATAAGTGTGGAGTGGGTTCTTTCAATGCTCCTTACACAGGAAACAAGGGAGAATCATACAACAACACACTCCCCGTTGACCGAATATCGGCACTCCCATGTCCTTT--CCCCCCCCTCCCTAATGNCAGTGTAAAATTCTCCCGACTGCGATGCTCTTTTAGTGTATTGAGTAAAAAAAACGATTTTTGGGAAAGGAAAGTATAACCCAGTAAAGGCTTCCTAAAGCTAACTCCGCGGAAAACGAACGGGAACTGAAAAAAGAGATGTTTCTTTACCGTCTTTGGTCGTTAGCCATTAGATTGCACTGCTCTCGATGGAGCAGCATCGATTAAAAGAAGCATCTACCTGTAAATAGACACTTTTAAATGTTACAATTCAAATCGTCATATGCATGCGGCCTTTACAGGGCGGCGCACCATTACATTCTAATTATCACCGTTGTAAAAAAAAGAACAGTATAAAGTACAGCTCACACATGATCCACAGCAAATACGCCGGTTACATCAAGCTGGAGGGAGAAGAAAGGTAGAATTTAATTTCATCATTGATTAATGAAGAAAAAGGAAAACACACACTGAGAAGTTCTGAATACATGCGCGATTACAGAAAATAAATAATTTAAAGAACATTGAAAGTAGTTAATA]
[+] EMBL BX623770 [CATTGGTGCTGATTCAAATCGTTGCGTTTTTTGTATGTACCATCTACATATACAATGCCGAATAATAGTCGAAGCATAAAGCGGGCATGCACAAGTTTAACGAAAATGATAGGGCGAACCTTTGTAACTACGGGACGATACGAAGTGCAGAGGAAAGCGAAACACCGATAGATGGTTAGAGTGTATTAACTTAACGACAAACTAAGTATAGGTGCATTTCATTTGCATTAGCCGTTTATTATTATGATTGTAGTAATTAGTTTTATGTTTAATTCGTACTCTGCTATCTAAGCGACATACACCACCTTGAAAAAAGCTCGAATTGAACGCAATTCAATTAGCAGCAAACACTTGAACGCTACCGTACACTCTCCGTGGGAAGCCAATGGGCAAATGCGCAGGTGTCACACAGGTCGAGGCCAACCTTCTGACAACGGTTGTGCCAAAAACCATTTACAAAGGAAGCAGTTTGGTCCGTTTTATTGCAACGTTGTGTGTGGCCATTATCATAAGCCTACATTATAAGTGTGGAGTGGGTTCTTTCAATGCTCCTTACACAGG AACAAGGGAGAATCATACAACAACACACTCCCCGTTGACCGAATATCGGCACTCCCATGTCCTTT CCCCCCCCTCCCTAATGNCAGTGTAAAATTCTCCCGACTGCGATGCTCTTTT ]
[+] EMBL BX627452 [ TGCGTTTTTTGTATGTACCATCTACATATACAATGCCGAATAATAGTCGAAGCATGAAGCGGGCATGCACAAGTTTAACGAAAATGATAGGGCGAACCTTTGTAACTACGGGACGATACGAAGTGCAGAGGAAAGCGAAACACCGATAGATGGTTAGAGTGTATTAACTTAACGACAAACTAAGTATAGGTGCATTTCATTTGCATTAGCCGTTTATTATTATGATTGTAGTAATTAATTTTATGTTTAATTCGTACTCTGCTATCTAAGCGACATACACCACCTTTAAAAACGCTCGAATTGAACGCAATTCAATTAGCAGCAAACACTTGAACGCTACCGTACACTCTCCTTGGGAAGCCAATGGGTAAATGGGCAGGTGTCACACAGGTCGAGGCCAACCTTCTGACAACGGTTGTGCCAAAAACCATTTACAAAGGAAGCAGATTGGTCCGTTTTATTGCAACGTTGTGTGTGGCCATTATCATAAGCCTACATTATAAGTGTGGAGTGGGTTCTTTCAATGCTCCTTACACAGGANACACGGGAGAATCATACAACAACACACTCCCCGTTGACCGAATATCGGCACTCCCATGTCCTTTCCCCCCCCCCTCCCTAATGNCAGTGTAAAATTCTCCCGACTGCGATGCTCTTTTAGTGTATTGAGTAAAAAAAACGATTTTTGGGAAAGGAAAGTATAA ]
[+] EMBL BX612405 [ ACCTTTGTAACTACGGGACTATACGAAGTGCAGATGAAAGCGAAACACCGATAGATGGTTAGAGTGTATTAACTTAACGACAAACTAAGTATAGGTGCATTTCATTTGCATTAGCCGTTTATTATTATGATTGTAGTAATTAGTTTTATGTTTAATTCGTACTCTGCTATCTAAGCGACATACACCACCTTGAAAAAAGCTCGAATTGAACGCAATTCAATTAGCAGCAAACACTTGAACGCTACCGTACACTCTCCGTGGGAAGCCAATGGGCAAATGCGCAGGTGTCACACAGGTCGAGGCCAACCTTCTGACAACGGTTGTGCCAAAAACCATTTACAAAGGAAGCAGTTTGGTCCGTTTTATTGCAACGTTGTGTGTGGCCATTATCATAAGCCTACATTATAAGTGTGGAGTGGGTTCTTTCAATGCTCCTTACACAGGAAACAAGGGAGAATCATACAACAACACACTCCCCGTTGACCAAATATCGGCACTCCCATGTCCTTT CCCCCCCCTCCCTAATGCCAGTGTAAAATT ]
[-] EMBL BX624670 [ AACGCAATTCAATTAGCAGCAAACACTTGAACGCTACCGTACACTCTCNTTGGGAAGCCAATGGGTAAATGGGCAGGTGTCACACAGGTCGAGGCCAACNTTCTGACAACGGTTGTGCCAAAAACCATTTACAAAGGAAGCAGATTGGTCCGTTTTATTGCAACGTTGTGTGTGGCCATTATCATAAGCCTACATTATAAGTGTGGAGTGGGTTCTTTCAATGCTCCTTACACAGGAAACACGGGAGAATCATACAACAACACACTCCCCGTTGACCGAATATCGGCACTCCCATGTCCTTTCCCCCCCCCCTCCCTAATGCCAGTGTAAAATTCTCCCGACTGCGATGCTCTTTTAGTGTATTGAGTAAAAAAAACGATTTTTGGGAAAGGAAAGTATAACCCAGTAAAGGCTTCCTAAAGCTAACTCCGCGGAAAACGAACGGGAACTGAAAAAAGAGATGTTTCTTTACCGTCTTTGGTCGTTAGCCATTAGATTGCACTGCTCTCGATGGAGCAGCATCGATTAAAAGAAGCATCTACCTGTAAATAGACACTTTTAAATGTTACAATTCAAATCGTCATATGCATGCGGCCTTTACAGGGCGGCGCACCATTACATTCTAATTATCACCGTTGTAAAAAAAAGAACAGTATAAAGTACAGCTCACACATGATCCACAGCAAATACGCCGGTTACATCAAGCTGGAGGGAGAAGAAAGGTAGAATTTAATTTCATCATTGATTAATGAAGAAAAAGGAAAACACACAC ]
[+] EMBL BM643868 [ AAAGCTAACTCCGCGGAAAACGAACGGGAACTGAAAAAAGAGATGTTTCTTTACCGTCTTTGGTCGTTAGCCATTAGATTGCACTGCTCTCGATGGAGCAGCATCGATTAAAAGAAGCATCTACCTGTAAATAGACACTTTTAAATGTTACAATTCAAATCGTCATATGCATGCGGCCTTTACAGGGCGGCGCACCATTACATTCTAATTATCACCGTTGTAAAAAAAAGAACAGTATAAAGTACAGCTCACACATGATCCACAGCAAATACGCCGGTTACATCAAGCTGGAGGGAGAAGAAAGGTAGAATTTAATTTCATCATTGATTAATGAAGAAAAAGGAAAACACACACTGAGAAGTTCTGAATACATGCGCGATTACAGAAAATAAATAATTTAAAGAACATTGAAAGTAGTTAATA]
consensusID : consensus_7370#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 776 fasta sequence
[AGAATCGCCCGAGGTNACAACTAAGTATAGGTGCATTTCATTTGCATTAGCCGTTTATTATTATGATTGTAGTAATTAATTTTATGTTTAATTCGTACTCTGCTATCTAAGCGACATACACCACCTTTAAAAACGCTCGAATTGAACGCAATTCAATTAGCAGCAAACACTTGAACGCTACCGTACACTCTCCTTGGGAAGCCAATGGGTAAATGGGCAGGTGTCACACAGGTCGAGGCCAACCTTCTGACAACGGTTGTGCCAAAAACCATTTACAAAGGAAGCAGATTGGTCCGTTTTATTGCAACGTTGTGTGTGGCCATTATCATAAGCCTACATTATAAGTGTGGAGTGGGTTCTTTCAATGCTCCTTACACAGGAAACACGGGAGAATCATACAACAACACACTCCCCGTTGACCGAATATCGGACTCCCATGTACCTTTACCCCCCACCCCTCCCTAATGCCAGTGTAAANATTCTCCCGACTGCGATGCTCTTTTAGTGTATTNGAGTAAACAAAAACGATTCNATGGGAANAGGAAAGTATAACCCAGTAAAGGCTTCCTAAAGCTAACTCCGCGGCAAAACGAACGGGAACTGANAAAAGAGATGTNCTTATACCCGGCCTNAGGTCGAAGCCCANATAGATTGCACTGCTCTCNATGGNGCAGCNATCGAATCTAANAGACGCATCTACCTGTCACAATANACNCNTTTAAANNTGGTCACACATTCAACATCGTCCATATGCTGCGGCCTTACACGGCGGCACA]
[+] EMBL AL931313 [AGAATCGCCCGAGGTNACAACTAAGTATAGGTGCATTTCATTTGCATTAGCCGTTTATTATTATGATTGTAGTAATTAATTTTATGTTTAATTCGTACTCTGCTATCTAAGCGACATACACCACCTTTAAAAACGCTCGAATTGAACGCAATTCAATTAGCAGCAAACACTTGAACGCTACCGTACACTCTCCTTGGGAAGCCAATGGGTAAATGGGCAGGTGTCACACAGGTCGAGGCCAACCTTCTGACAACGGTTGTGCCAAAAACCATTTACAAAGGAAGCAGATTGGTCCGTTTTATTGCAACGTTGTGTGTGGCCATTATCATAAGCCTACATTATAAGTGTGGAGTGGGTTCTTTCAATGCTCCTTACACAGGAAACACGGGAGAATCATACAACAACACACTCCCCGTTGACCGAATATCGGACTCCCATGTACCTTTACCCCCCACCCCTCCCTAATGCCAGTGTAAANATTCTCCCGACTGCGATGCTCTTTTAGTGTATTNGAGTAAACAAAAACGATTCNATGGGAANAGGAAAGTATAACCCAGTAAAGGCTTCCTAAAGCTAACTCCGCGGCAAAACGAACGGGAACTGANAAAAGAGATGTNCTTATACCCGGCCTNAGGTCGAAGCCCANATAGATTGCACTGCTCTCNATGGNGCAGCNATCGAATCTAANAGACGCATCTACCTGTCACAATANACNCNTTTAAANNTGGTCACACATTCAACATCGTCCATATGCTGCGGCCTTACACGGCGGCACA]
consensusID : consensus_7370#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 709 fasta sequence
[TCAGCAGAATCGCCCCGACGGTGTATATTATTATGATTGTAGTAACTTAATTTTATGTTTAATTCGTACTCTGCTATCTAAGCGACATACACCACCTTTAAAAACGCTCGAATTGAACGCAATTCAATTAGCAGCAAACACTTGAACGCTACCGTACACTCTCCTTGGGAAGCCAATGGGTAAATGGGCAGGTGTCACACAGGTCGAGGCCAACCTTCTGACAACGGTTGTGCCAAAAACCATTTACAAAGGAAGCAGATTGGTCCGTTTTATTGCAACGTTGTGTGTGGCATTATCATAAGCCTACATTATAAGTGTGGAGTGGGTTCTTTCAATGCTCCTTACACAGGAAACACGGGAGAATCATACAAAAANACAATCCCCGGTTGACCGAATATCGGCACTCCCATGTCCTTTCACCACCCGCCACTNCCTAATGCCAGGTGTAAAANTCTCCCGAATTGCGATGCTCTNCTTCAGGGGTGANTNCGGACGTCTACCACATCACACACAACAGGACAGCNNCCACGGAGGGCAACACACGGGGACACACAGGTCAGTAAAACCCCCAGGGTAAAACGGGGGTANACCCTAAAAAAAGGCCTAAAAAACTNCCCCGGGCGGGACACAACACCGGAACACCGGGGAAACACTTGGAACACACAAGAAGGCAATCGCTCGACCCCATCTAAACCNCGGGCCANCATAC]
[+] EMBL AL696855 [TCAGCAGAATCGCCCCGACGGTGTATATTATTATGATTGTAGTAACTTAATTTTATGTTTAATTCGTACTCTGCTATCTAAGCGACATACACCACCTTTAAAAACGCTCGAATTGAACGCAATTCAATTAGCAGCAAACACTTGAACGCTACCGTACACTCTCCTTGGGAAGCCAATGGGTAAATGGGCAGGTGTCACACAGGTCGAGGCCAACCTTCTGACAACGGTTGTGCCAAAAACCATTTACAAAGGAAGCAGATTGGTCCGTTTTATTGCAACGTTGTGTGTGGCATTATCATAAGCCTACATTATAAGTGTGGAGTGGGTTCTTTCAATGCTCCTTACACAGGAAACACGGGAGAATCATACAAAAANACAATCCCCGGTTGACCGAATATCGGCACTCCCATGTCCTTTCACCACCCGCCACTNCCTAATGCCAGGTGTAAAANTCTCCCGAATTGCGATGCTCTNCTTCAGGGGTGANTNCGGACGTCTACCACATCACACACAACAGGACAGCNNCCACGGAGGGCAACACACGGGGACACACAGGTCAGTAAAACCCCCAGGGTAAAACGGGGGTANACCCTAAAAAAAGGCCTAAAAAACTNCCCCGGGCGGGACACAACACCGGAACACCGGGGAAACACTTGGAACACACAAGAAGGCAATCGCTCGACCCCATCTAAACCNCGGGCCANCATAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7370#0 CATTGGTGCTGATTCAAATCGTTGCGTTTTTTGTATGTACCATCTACATATACAATGCCG 60
consensus_7370#1 ------------------------------------------------------------
consensus_7370#2 ------------------------------------------------------------
consensus_7370#0 AATAATAGTCGAAGCATAAAGCGGGCATGCACAAGTTTAACGAAAATGATAGGGCGAACC 120
consensus_7370#1 ------------------------------------------------------------
consensus_7370#2 ------------------------------------------------------------
consensus_7370#0 TTTGTAACTACGGGACGATACGAAGTGCAGAGGAAAGCGAAACACCGATAGATGGTTAGA 180
consensus_7370#1 ---------------------------------------------------------AGA 3
consensus_7370#2 ------------------------------------------------------------
consensus_7370#0 GTGTATTAACTTAACGACAAACTAAGTATAGGTGCATTTCATTTGCATTAGC--CGTTTA 238
consensus_7370#1 ATCGCCCGAGGTNAC----AACTAAGTATAGGTGCATTTCATTTGCATTAGC--CGTTTA 57
consensus_7370#2 ---------------------------------TCAGCAGAATCGCCCCGACGGTGTATA 27
** * * ** * ** **
consensus_7370#0 TTATTATGATTGTAGTAA-TTAGTTTTATGTTTAATTCGTACTCTGCTATCTAAGCGACA 297
consensus_7370#1 TTATTATGATTGTAGTAA-TTAATTTTATGTTTAATTCGTACTCTGCTATCTAAGCGACA 116
consensus_7370#2 TTATTATGATTGTAGTAACTTAATTTTATGTTTAATTCGTACTCTGCTATCTAAGCGACA 87
****************** *** *************************************
consensus_7370#0 TACACCACCTTGAAAAAAGCTCGAATTGAACGCAATTCAATTAGCAGCAAACACTTGAAC 357
consensus_7370#1 TACACCACCTTTAAAAACGCTCGAATTGAACGCAATTCAATTAGCAGCAAACACTTGAAC 176
consensus_7370#2 TACACCACCTTTAAAAACGCTCGAATTGAACGCAATTCAATTAGCAGCAAACACTTGAAC 147
*********** ***** ******************************************
consensus_7370#0 GCTACCGTACACTCTCCGTGGGAAGCCAATGGGCAAATGCGCAGGTGTCACACAGGTCGA 417
consensus_7370#1 GCTACCGTACACTCTCCTTGGGAAGCCAATGGGTAAATGGGCAGGTGTCACACAGGTCGA 236
consensus_7370#2 GCTACCGTACACTCTCCTTGGGAAGCCAATGGGTAAATGGGCAGGTGTCACACAGGTCGA 207
***************** *************** ***** ********************
consensus_7370#0 GGCCAACCTTCTGACAACGGTTGTGCCAAAAACCATTTACAAAGGAAGCAGTTTGGTCCG 477
consensus_7370#1 GGCCAACCTTCTGACAACGGTTGTGCCAAAAACCATTTACAAAGGAAGCAGATTGGTCCG 296
consensus_7370#2 GGCCAACCTTCTGACAACGGTTGTGCCAAAAACCATTTACAAAGGAAGCAGATTGGTCCG 267
*************************************************** ********
consensus_7370#0 TTTTATTGCAACGTTGTGTGTGGCCATTATCATAAGCCTACATTATAAGTGTGGAGTGGG 537
consensus_7370#1 TTTTATTGCAACGTTGTGTGTGGCCATTATCATAAGCCTACATTATAAGTGTGGAGTGGG 356
consensus_7370#2 TTTTATTGCAACGTTGTGTGTGGC-ATTATCATAAGCCTACATTATAAGTGTGGAGTGGG 326
************************ ***********************************
consensus_7370#0 TTCTTTCAATGCTCCTTACACAGGAAACAAGGGAGAATCATACAACAACACACTCCCCG- 596
consensus_7370#1 TTCTTTCAATGCTCCTTACACAGGAAACACGGGAGAATCATACAACAACACACTCCCCG- 415
consensus_7370#2 TTCTTTCAATGCTCCTTACACAGGAAACACGGGAGAATCATACAAAAANACAATCCCCGG 386
***************************** *************** ** *** ******
consensus_7370#0 TTGACCGAATATCGGCACTCCCATGTCCTTT-----CCCCCCCCTCCCTAATGNCAG-TG 650
consensus_7370#1 TTGACCGAATATCGG-ACTCCCATGTACCTTTACCCCCCACCCCTCCCTAATGCCAG-TG 473
consensus_7370#2 TTGACCGAATATCGGCACTCCCATGTCCTTTCACCACCCGCCACTNCCTAATGCCAGGTG 446
*************** ********** * ** *** ** ** ******* *** **
consensus_7370#0 TAAAA-TTCTCCCGACTGCGATGCTCTTTTAGTGTATTG-AGTAAA-AAAAACGATTTTT 707
consensus_7370#1 TAAANATTCTCCCGACTGCGATGCTCTTTTAGTGTATTNGAGTAAACAAAAACGATTCNA 533
consensus_7370#2 TAAAANTCTCCCGAATTGCGATGCTCTNCTTCAGGGGTG-ANTNCGGACGTCTACCACAT 505
**** * ** * *********** * * * * * *
consensus_7370#0 --GGGAAAGGAAAGTATAACCCAGTAAAGGCTTCCTAAAGCTAACTCCGCGG-AAAACGA 764
consensus_7370#1 TGGGAANAGGAAAGTATAACCCAGTAAAGGCTTCCTAAAGCTAACTCCGCGGCAAAACGA 593
consensus_7370#2 CACACACAACAGGACAGCNNCCACGGAGGGCAACACACGG--GGACACACAG----GTCA 559
* * * * *** * *** * * * * * * *
consensus_7370#0 ACGGGAACTGAAAAAAGAGATGTTTCTTTACC--GTCTTTGGTCGTTAGCCAT-TAGATT 821
consensus_7370#1 ACGGGAACTGANAAAAGAGATGTNCTTATACCCGGCCTNAGGTCGAAGCCCANATAGATT 653
consensus_7370#2 GTAAAACCCCCAGGGTAAAACGGGGGTANACC----CTAAAA--AAAGGCCTAAAAAACT 613
* * * * * * *** ** ** * * *
consensus_7370#0 GCACTGCTCTCGATGGAGCAGCA-TCGA--TTAAAAGAAGCATCTACCTGTAA--ATAGA 876
consensus_7370#1 GCACTGCTCTCNATGGNGCAGCNATCGAATCTAANAGACGCATCTACCTGTCACAATANA 713
consensus_7370#2 NCCCCGGGCGGGACACAACACCG---GAACACCGGGGAAACACTTG-----------GAA 659
* * * * * ** * ** ** ** * *
consensus_7370#0 CACTTTTAAATGT---TACA-ATTCAA-ATCGTC-ATATGCATGCGGCCTTTACAGGGCG 930
consensus_7370#1 CNCNTTTAAANNTGGTCACACATTCAACATCGTCCATATGC-TGCGGCCTT-ACACGGCG 771
consensus_7370#2 CACACAAGAAGGC----AATCGCTCGACCCCATC--TAAACCNCGGGCCANCATAC---- 709
* * ** * ** * * ** ** * **** * *
consensus_7370#0 GCGCACCATTACATTCTAATTATCACCGTTGTAAAAAAAAGAACAGTATAAAGTACAGCT 990
consensus_7370#1 GCACA------------------------------------------------------- 776
consensus_7370#2 ------------------------------------------------------------
consensus_7370#0 CACACATGATCCACAGCAAATACGCCGGTTACATCAAGCTGGAGGGAGAAGAAAGGTAGA 1050
consensus_7370#1 ------------------------------------------------------------
consensus_7370#2 ------------------------------------------------------------
consensus_7370#0 ATTTAATTTCATCATTGATTAATGAAGAAAAAGGAAAACACACACTGAGAAGTTCTGAAT 1110
consensus_7370#1 ------------------------------------------------------------
consensus_7370#2 ------------------------------------------------------------
consensus_7370#0 ACATGCGCGATTACAGAAAATAAATAATTTAAAGAACATTGAAAGTAGTTAATA 1164
consensus_7370#1 ------------------------------------------------------
consensus_7370#2 ------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||