These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7374#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 931 fasta sequence [CCGAAGCGCCAACGGTACGGATCGCTTTCCACACAGTTCGTTGCAAG-AATCGGTTCGTCGTTTTCCACGCCACTAGCGCATTGTTTTGTGTGCGTCGTGGTCGTCTGTTTTAATTACAATCCCGTGCTGAA-GGGCTCCAACGGGAAATTGTGTTGCTAAAAATTGCCACAAAAAGAAAAAAAGAAAACGCAATAATGGTTTAAAAGTTTTTTGTTTGTTAAACATGTTTGTGAGATTCGAACCACCGCGTACCACCGTCGTCATCAACAGCAGTAGCATTAAACGCAACAGTAGTGCAGCATCCAACCAAGCCCGTAGTGGTGCATCGGCCGTGTGATCGAATGTGTTTTCGAGCAATAGTAATACATCCAAGCAAGCCATACTAGAGCAAGAGAAGAAGAAG-AAAAAAATGCGTCTTTCCGCGCGCATCAAGTGTTTCAAGTATTTAGTGTACGCATATGTTATTCTAATATCGATATGTGGCGGTGCACAGCTAGTAATCGGAGCATTCCTACTCTGGACCCATAAGCAGTACGCGCCGATCGTAAAGAATCAGTTCTGGGAACCGTTTGCCGTGCTGATCGGGCTCGGCATAATCTCCCAAGCCCTCTGCTACCTTGGCTGGACGTCCACGAGCCGG-AAGCAGCGGTGTTACTTAGGATTGTTCTGCGCATTTTTAGTGCTCTTCATTGTGATCTTATTCTTAGTGAGTGGGTGGTCGGTCGCCACCAAGGCGCATCTGATCGTACCGGCCGAGGTGGCGATCGAGACGAGCTTTACCGAGTTTCTGGCAAAAGACAACACGAACGATCAGACGCACATCTGGAACCGATTGCAGCGGGATTTCCGTTGCTGCGGGTACAATGAGCATCCATGACTACAAGAAGAACAAGCAGATGGGGCTTCCCCTGGTCCTGCTACGATCCGATCG] [+] EMBL BM632247 [CCGAAGCGCCAACGGTACGGATCGCTTTCCACACAGTTCGTTGCAAG AATCGGTTCGTCGTTTTCCACGCCACTAGCGCATTGTTTTGTGTGCGTCGTGGTCGTCTGTTTTAATTACAATCCCGTGCTGAA GGGCTCCAACGGGAAATTGTGTTGCTAAAAATTGCCACAAAAAGAAAAAAAGAAAACGCAATAATGGTTTAAAAGTTTTTTGTTTGTTAAACATGTTTGTGAGATTCGAACCACCGCGTACCACCGTCGTCATCAACAGCAGTAGCATTAAACGCAACAGTAGTGCAGCATCCAACCAAGCCCGTAGTGGTGCATCGGCCGTGTGATCGAATGTGTTTTCGAGCAATAGTAATACATCCAAGCAAGCCATACTAGAGCAAGAGAAGAAGAAG AAAAAAATGCGTCTTTCCGCGCGCATCAAGTGTTTCAAGTATTTAGTGTACGCATATGTTATTCTAATATCGATATGTGGCGGTGCACAGCTAGTAATCGGAGCATTCCTACTCTGGACCCATAAGCAGTACGCGCCGATCGTAAAGAATCAGTTCTGGGAACCGTTTGCCGTGCTGATCGGGCTCGGCATAATCTCCCAAGCCCTCTGCTACCTTGGCTGGACGTCCACGAGCCGGAAAGCAGCGGTGTTACTTAGGATTG ] [+] EMBL BM643225 [ ccgGTTCGTTGCAAGAAATCGGTTCGTCGTTTTCCACGCCACTAGCGCATTGTTTTGTGTGCGTGGTGGTCGTCTGTTTTAATTGCCATCCCATGC GAACGGGCTCTAACGGGAAATTGTGTTATTAAAAATTGCCACAAAAAGAAAAAAAAGAAACGCAATAATGGTTTAAAAGTTTTTTGTTTGTTAAACATGTTTGTGAGATTCGAACCACCGCGTACCACCGTCGTCATCAACAGCAGTAGCATTAAACGCAACAGTAGTGCAGCATCCAACCAAGCCCGTAGTGGTGCATCGACCGTGTGATCGAATGTGTTTTCCAGCAATAATAATACATCCAAGCAAGCCATACTAGAGCAAGAGAAGAAGAAG AAAAAAATGCGTCTTTCCGCGCGCATCAAGTGTTTCAAGTATTTAGTGTACGCATATGTTATTCTAATATCGATATGTGGCGGTGCACAGCTAGTAATTGGAGCATTCCTACTCTGGACCCATAAGCAGTACGCGCCGATCGTAAAGAATCAGTTCTGGGAACCGTTTGCCGTGCTGATCGGGCTCGGCATAATCTCCCAAGCCCTCTGCTACCTTGG ] [+] EMBL BX623405 [ TTAACCATGTTTGTGAGATTCGAACCACCGCGTACCACCGTCGTCATCAACAGCAGTAGCATTAAACGCAACAGTAGTGCAGCATCCAACCAAGCCCGTAGTGGTGCATCGGCCGTGTGATCGAATGTGTTTTCGAGCAATAGTAATACATCCAAGCAAGCCATACTAGAGCAAGAGAAGAATAAG AAAAAAATGCGTCTTTCCGCGCGCATCAAGTGTTTCAAGTATTTAGTGTACGCATATGTTATTCTAATATCGATATGTGGCGGTGCACAGCTAGTAATCGGAGCATTCCTACTCTGGACCCATAAGCAGTACGCGCCGATCGTAAAGAATCAGTTCTGGGAACCGNTTGCCGTGCTGATCGGGCTCGGCATAATCTCCCAAGCCCTCTGCTACCTTGGCTGGACGTCCA ] [+] EMBL BM585448 [ ccgAACATGTTTGTGAGATTCGAACCACCGCGTACCACCGTCGTCATCAACAGCAGTAGCATTAAACGCAACAGTAGTGCAGCATCCAACCAAGCCCGTAGTGGTGCATCGGCCGTGTGATCGAATGTGTTTTCGAGCAATAGTAATACATCCAAGCAAGCCATACTAGAGCGAGAGAAGAAGAAG AAAAAAATGCGTCTTTCCGCGCGCATCAAGTGTTTCAAGTATTTAGTGTACGCATATGTTATTCTAATATCGATATGTGGCGGTGCACAGCTAGTAATCGGAGCATTCCTACTCTGGACCCATAAGCAGTACGCGCCGATCGTAAAGAATCAGTTCTGGGAACCGTTTGCCGTGCTGATCGGGCTCGGCATAATCTCCCAAGCCCTCTGCTACCTTGGCTGGACGTCCACGAGCCGG AAGCAGCGGTGTTACTTAGGATTGTTCTGCGCATTTTTAGTGCTCTTCATTGTGATCTTATTCTTAGTGAGTGGGTGGTCGGTCGCCACCAAGGCGCATCTGATCGTACCGGCCGAGGTGGCGATCGAGACGAGCTTTACCGAGTTTCTGGCAAAAGACAACACGAACGATCAGACGCACATCTGGAACCGATTGCAGCGGGATTTCCGTTGCTGCGGGTACAATGAGCATCCATGACTACAAGAAGAACAAGCAGATGGGGCTTCCCCTGGTCCTGCTACGATCCGATCG] [+] EMBL BM635514 [ ccgCGAACCACCGCGTACCACCGTCGTCATCAACAGCAGTAGCATTAAACGCAACAGTAGTGCAGCATCCAACCAAGCCCGTAGTGGTGCATCGGCCGTGTGATCGAATGTGTTTTCGAGCAATAGTAATACATCCAAGCAAGCCATACTAGAGCGAGAGAAGAAGAAGAAAAAAAATGCGTCTTTCCGCGCGCATCAAGTGTTTCAAGTATTTAGTGTACGCATATGTTATTCTAATATCGATATGTGGCGGTGCACAGCTAGTAATCGGAGCATTCCTACTCTGGACCCATAAGCAGTACGCGCCGATCGTAAAGAATCAGTTCTGGGAACCGTTTGCCGTGCTGATCGGGCTCGGCATAATCTCCCAAGCCCTCTGCTACCTTGGCTGGACGTCCACGAGCCGG AAGCAGCGGTGTTACTTAGGATTGTTCTGCGCATTTTTAGTGCTCTTCATTGTGATCTTATTCTTAGTGAGTGGGTGGTCGGTCGCCACCAAGGCGCATCTGATCGTACCGGCCGAGGTGGCGATCGAGACGAGCTTTACCGAGTTTCTGGCAAAAGACAACACGAACGATCAGACGCACATCTGGAACCGATTGCAGCGGGATTTCCGTTGCTGCGGGTACAATG GCATCCATGACTACAAGAAGAACAAGCAGATGGG ] consensusID : consensus_7374#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCAAGAGAAGAAGAAGAAAAAAATGCGTCTTTCCGCGCGCATCAAGTGTTTCAAGTATTTAGTGTACGCATATGTTATTCTAATATCGATATGTGGCGGTGCACAGCTAGTAATCGGAGCATTCCTACTCTGGACCCATAAGCAGTACGCGCCGATCGTAAAGAATCAGTTCTGGGAACCGTTTGCCGTGCTGATCGGGCTCGGCATAATCTCCCAAGCCCTCTGCTACCTTGGCTGGACGTCCACGAGCCGGAAGCAGCGGTGTTACTTAGGATTGTTCTGCGCATTTTTAGTGCTCTTCATTGTGATCTTATTCTTAGTGAGTGGGTGGTCGGTCGCCACCAAGGCGCATCTGATCGTACCGGCCGAGGTGGCGATCGAGACGAGCTTTACCGAGTTTCTGGCAAAAGACAACACGAACGATCAGACGCACATCTGGAACCGATTGCAGCGGGATTTCCGTTGCTGCGGGTACAATGGCATCCATGACTACAAGAAGAACAAGCAGATGGGCTTCCCCTGGTCCTGCTACGATCCGATCGACACGAAAGTCTTCAACACCGGCTGCATGCACGTG] [+] EMBL BM591072 [CCGCCCACGCGTCCGCCCACGCGTCCGGCAAGAGAAGAAGAAGAAAAAAATGCGTCTTTCCGCGCGCATCAAGTGTTTCAAGTATTTAGTGTACGCATATGTTATTCTAATATCGATATGTGGCGGTGCACAGCTAGTAATCGGAGCATTCCTACTCTGGACCCATAAGCAGTACGCGCCGATCGTAAAGAATCAGTTCTGGGAACCGTTTGCCGTGCTGATCGGGCTCGGCATAATCTCCCAAGCCCTCTGCTACCTTGGCTGGACGTCCACGAGCCGGAAGCAGCGGTGTTACTTAGGATTGTTCTGCGCATTTTTAGTGCTCTTCATTGTGATCTTATTCTTAGTGAGTGGGTGGTCGGTCGCCACCAAGGCGCATCTGATCGTACCGGCCGAGGTGGCGATCGAGACGAGCTTTACCGAGTTTCTGGCAAAAGACAACACGAACGATCAGACGCACATCTGGAACCGATTGCAGCGGGATTTCCGTTGCTGCGGGTACAATGGCATCCATGACTACAAGAAGAACAAGCAGATGGGCTTCCCCTGGTCCTGCTACGATCCGATCGACACGAAAGTCTTCAACACCGGCTGCATGCACGTG] consensusID : consensus_7374#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence [CCCCGAGGTNGTTCGTCGTTTCCACGCCACTAGCGCATTGTTTTGTGTGCGTCGTGGTCGTCTGTTTTAATTGCCGTCCCGTGCGGAAGGGCTCCAACGGGAAATTGTGTTATTAAAAATTGCCACAGAAAAGAAAAAAAGGAAACGCAATAATGGTTTAAAAGTTTGTTGTTTGTAANCATGTGTGAGATTCGAACCACCGAGTACCACCGTCGTCATCAANAGCAGTAGCATTAAACGCAACAGTAGTGNAGCATCCAACAAGCCCGAGTGGTGCATCGCGCCGTGTGATCGAATGTGTNTCTCGAGCCAATAGTGATCTACATCCACAGCGAAGCCATANNAGAGCCACAGGAGAAGAAGATGAATNCAATGCGTCTTTCCGGCGCGCATCAAGTGTTTCAAGTATTTGAGTGTACGCATATGTTATTCTAATATCGATATGTGGGGGTGCATCATGCTAGTAAATCGGAGCATTCNCTACTCTGGACCCATAATCAGTACGCGCCGNTCGTCTGGGAATCAGTTCTGGGAACCG] [+] EMBL AL931119 [CCCCGAGGTNGTTCGTCGTTTCCACGCCACTAGCGCATTGTTTTGTGTGCGTCGTGGTCGTCTGTTTTAATTGCCGTCCCGTGCGGAAGGGCTCCAACGGGAAATTGTGTTATTAAAAATTGCCACAGAAAAGAAAAAAAGGAAACGCAATAATGGTTTAAAAGTTTGTTGTTTGTAANCATGTGTGAGATTCGAACCACCGAGTACCACCGTCGTCATCAANAGCAGTAGCATTAAACGCAACAGTAGTGNAGCATCCAACAAGCCCGAGTGGTGCATCGCGCCGTGTGATCGAATGTGTNTCTCGAGCCAATAGTGATCTACATCCACAGCGAAGCCATANNAGAGCCACAGGAGAAGAAGATGAATNCAATGCGTCTTTCCGGCGCGCATCAAGTGTTTCAAGTATTTGAGTGTACGCATATGTTATTCTAATATCGATATGTGGGGGTGCATCATGCTAGTAAATCGGAGCATTCNCTACTCTGGACCCATAATCAGTACGCGCCGNTCGTCTGGGAATCAGTTCTGGGAACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7374#0 CCGAAGCGCCAACGGTACGGATCGCTTTCCACACAGTTCGTTGCAAGAATCGGTTCGTCG 60 consensus_7374#2 ------------------------------------------CCCCGAGGTNGTTCGTCG 18 consensus_7374#1 --------------------------CCGCCCACGCGTCCGCCCACGCGTCCGGCAAGAG 34 * * * * consensus_7374#0 TTTTCCACGCCACTAGCGCATTGTTTTGTGTGCGTCGTG-GTCGTCTGT-TTTAAT---- 114 consensus_7374#2 TTT-CCACGCCACTAGCGCATTGTTTTGTGTGCGTCGTG-GTCGTCTGT-TTTAAT---- 71 consensus_7374#1 AAGAAGAAGAAAAAAATGCGTCTTTCCGCGCGCATCAAGTGTTTCAAGTATTTAGTGTAC 94 * * * * ** * ** * * ** ** * ** ** **** * consensus_7374#0 -----TACAATCCCG-TGCTGAAGGGCTCCAACGGGAAATTGTGTTGCTAAAA-ATTGCC 167 consensus_7374#2 -----TGCCGTCCCG-TGCGGAAGGGCTCCAACGGGAAATTGTGTTATTAAAA-ATTGCC 124 consensus_7374#1 GCATATGTTATTCTAATATCGATATGTGGCGGTGCACAGCTA-GTAATCGGAGCATTCCT 153 * * * * ** * * * * * ** * *** * consensus_7374#0 ACA-AAAAGAAAAAAAGAAAACGCAATAATGGTTTAAAAG----TTTTTTGTTTGTTAAA 222 consensus_7374#2 ACAGAAAAGAAAAAAAGGAAACGCAATAATGGTTTAAAAG----TTTGTTGTTTGT-AAN 179 consensus_7374#1 ACTCTGGACCCATAAGCAGTACGCGCCGATCGTAAAGAATCAGTTCTGGGAACCGTTTGC 213 ** * * ** **** ** ** * ** * * ** consensus_7374#0 CATGTTTGTGAGATTCG----AACCACCGCGTACCACCGTCGTCATCAACAGCAGTAGCA 278 consensus_7374#2 CATG--TGTGAGATTCG----AACCACCGAGTACCACCGTCGTCATCAANAGCAGTAGCA 233 consensus_7374#1 CGTGCTGATCGGGCTCGGCATAATCTCCCAAGCCCTCTGCTACCTTGGCTGGACGTC-CA 272 * ** * * *** ** * ** ** * * * * * ** ** consensus_7374#0 TTAAACGCAA-CAGTAGTGCAGCATCCAACCAAGCC-CGTAGTGGT-GCATCG-GCCGTG 334 consensus_7374#2 TTAAACGCAA-CAGTAGTGNAGCATCCAAC-AAGCC-CG-AGTGGT-GCATCGCGCCGTG 288 consensus_7374#1 CGAGCCGGAAGCAGCGGTGTTACTTAGGATTGTTCTGCGCATTTTTAGTGCTCTTCATTG 332 * ** ** *** *** * * * * ** * * * * * ** consensus_7374#0 TGATCGAATGTGTTT-TCGAGC-AATAGTAAT--ACATCCA-AGC-AAGCC-ATACTAGA 387 consensus_7374#2 TGATCGAATGTGTNTCTCGAGCCAATAGTGATCTACATCCACAGCGAAGCC-ATANNAGA 347 consensus_7374#1 TGATCTTATTCTTAG--TGAGTGGGTGGTCGGTCGCCACCAAGGCGCATCTGATCGTACC 390 ***** ** * *** * ** * *** ** * * ** * consensus_7374#0 GC---AAGAGAAGA---AGAAGAAAAAAATGCGTCTTTCCG-CGCGCATCAAGTGTTTCA 440 consensus_7374#2 GCCACAGGAGAAGA---AGATGAATNCAATGCGTCTTTCCGGCGCGCATCAAGTGTTTCA 404 consensus_7374#1 GGCCGAGGTGGCGATCGAGACGAGCTTTAC-CGAGTTTCTGGCAAAAGACAACACGAACG 449 * * * * ** *** ** * ** **** * * *** * consensus_7374#0 AGTATTT-AGTGTACGCATATGTT---ATTCTAATATCGATATGTGGCGGTGCA------ 490 consensus_7374#2 AGTATTTGAGTGTACGCATATGTT---ATTCTAATATCGATATGTGGGGGTGCA------ 455 consensus_7374#1 ATCAGACGCACATCTGGAACCGATTGCAGCGGGATTTCCGTTGCTGCGGGTACAATGGCA 509 * * * * * * * * ** ** * ** *** ** consensus_7374#0 -CA--GCTAGTAA-TCGGAGCATTCC-TACTCTGGACCCATAAGCAGTACGCGCCGATCG 545 consensus_7374#2 -TCATGCTAGTAAATCGGAGCATTCNCTACTCTGGACCCATAATCAGTACGCGCCGNTCG 514 consensus_7374#1 TCCATGACTACAAGAAGAACAAGCAGATGGGCTTCCCCTGGTCCTGCTACGATCCGATCG 569 * ** * * * * ** ** **** *** *** consensus_7374#0 TA-AAGAATCAGTTCTGGGAACCGTTTGCCGTGCTGATCGGGCTCGGCATAATCTCCCAA 604 consensus_7374#2 TCTGGGAATCAGTTCTGGGAACCG------------------------------------ 538 consensus_7374#1 ACACGAAA---GTCTTCAACACCGGCTGCATGCACGTG---------------------- 604 ** ** * **** consensus_7374#0 GCCCTCTGCTACCTTGGCTGGACGTCCACGAGCCGGAAGCAGCGGTGTTACTTAGGATTG 664 consensus_7374#2 ------------------------------------------------------------ consensus_7374#1 ------------------------------------------------------------ consensus_7374#0 TTCTGCGCATTTTTAGTGCTCTTCATTGTGATCTTATTCTTAGTGAGTGGGTGGTCGGTC 724 consensus_7374#2 ------------------------------------------------------------ consensus_7374#1 ------------------------------------------------------------ consensus_7374#0 GCCACCAAGGCGCATCTGATCGTACCGGCCGAGGTGGCGATCGAGACGAGCTTTACCGAG 784 consensus_7374#2 ------------------------------------------------------------ consensus_7374#1 ------------------------------------------------------------ consensus_7374#0 TTTCTGGCAAAAGACAACACGAACGATCAGACGCACATCTGGAACCGATTGCAGCGGGAT 844 consensus_7374#2 ------------------------------------------------------------ consensus_7374#1 ------------------------------------------------------------ consensus_7374#0 TTCCGTTGCTGCGGGTACAATGAGCATCCATGACTACAAGAAGAACAAGCAGATGGGGCT 904 consensus_7374#2 ------------------------------------------------------------ consensus_7374#1 ------------------------------------------------------------ consensus_7374#0 TCCCCTGGTCCTGCTACGATCCGATCG 931 consensus_7374#2 --------------------------- consensus_7374#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||