These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7376#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 840 fasta sequence [CCGCGAAAACGGGCCGTCTATATATGGATTTCCTGCTTGTTCCCGCACACTCCTGTCGGCCATGTTTTCGGACGGCGCAGTCCTTTATAAGTTCTAAACAAAGTGTAACCCGCTCCGCCATCAACCGTCGGTGCCGTAGGTGTGATTGCAA-GAACCTCCGCCCGCTGCAGAACGACCGGAAG-AAGCGCACAAAATGCGGCACGGAACTGGCTCGCCTCCAGTCCGTCCTTGCTGAGCAGCTGCTGCGCCATCAGAAACACAACACAACTCCAGCGTCATCG-TCGCCG-TCTCGCCTTCGACAAGCGTAAATCAGGTGTGAAAATCGGAGAGTCCGTCGATTGTTGTTCTAGCGGTGTAACGCCCTGCTTCGTTAGAACGGAATAACAGCACAGCGACAACTGGTCGGACGGAAACCCCGTCCCGCGGGGACCTGTCTATTTGGTCGGCTGAAGTGAAA-C---C--CCCGC--CCCATCGAACAGCATCAGTTCATCTAAGTATGCTCTCCAGCAGTAGAAGCATAGCGACAAAGAAAGCGTAGAACGGTCCCGGATCATCTAGTCAGCGGA-ATCATAACAATCGACTAGCAGCAGCAGCAGTCCACGGCTTTGCAGAAAGAACACAGCCAAGATGAGCCTACAGAACGGTAGCGGCAATCGTGGCCACCACGGCAAGGATTCGGCCAAGCGGTTCTCCATACACGACGCGTTCGAGGAGGAAACGGACGAGGTAATTAAGGTGTACGGCTCGACCGTCATCAGTACACCGATGCGGGCGAAGGCGCGCTCCCCGGACGATGTGTCGATTAGAATACACGATCAAAGGGATAGTGATTCGCTGATACAG] [+] EMBL BM614728 [CCGCGAAAACGGGCCGTCTATATATGGATTTCCTGCTTGTTCCCGCACACTCCTGTCGGCCATGTTTTCGGACGGCGCAGTCCTTTATAAGTTCTAAACAAAGTGTAACCCGCTCCGCCATCAACCGTCGGTGCCGTAGGTGTGATTGCAA GAACCTCCGCCCGCTGCAGAACGACCGGAAG AAGCGCACAAAATGCGGCACGGAACTGGCTCGCCTCCAGTCCGTCCTTGCTGAGCAGCTGCTGCGCCATCAGAAACACAACACAACTCCAGCGTCATCG TCGCCG TCTCGCCTTCGACAAGCGTAAATCAGGTGTGAAAATCGGAGAGTCCGTCGATTGTTGTTCTAGCGGTGTAACGCCCTGCTTCGTTAGAACGGAATAACAGCACAGCGACAACTGGTCGGACGGAAACCCCGTCCCGCGGGGACCTGTCTATTTGGTCGGCTGAAGTGAAA C C CCCGC CCCATCGAACAGCATCAGTTCATCTAAGTATGCTCTCCAGCAGTAGAAGCATAGCGACAAAGAAAGCGTAGAACGGTCCCGGATCATCTAGTCAGCGGA ATCATAACAATCGACTAGCAGCAGCAGCAGTCCACGGCTTTGCAGAAAGAA ] [+] EMBL AL934878 [ gcccgaggtAAC AAGTGTAACCCGCTCCGCCATC ACCGTTGGTGCCGTANGTGCGATTGCAACGAACCTCCGCCCGCTGCAGAACGACCGGAAGCAAGCGCACAAAATGCGGCACGGAACTGGCTCGCCTCCAGTCCGTCCTTGCTGAGCAGCTGCNGCGCCATCAGAAACACAACACTACTCCAGCGTCATCGCTCGCCGCTCTCGCCTTCGACAAGCGTAAATCAGGTGTGAAAATCG GAGTCCGTCGA TTGTTCTAGCGGTGTAACGCCCTGCTTCGTTACAACGGAATAACAGCGCAGCAACAACTGGTCGGACGGAAACCACGTCCCGCGGGGACCTGCCTATTTGGTCGGCTGAAGTGAAA T CAAACAGCCACCCATCAAACAGCATCAGTTCATCTAAGTATGCTCTCCAGCAGTTGAAGCATAGCGACAAAGAAAGCGTAGAACGGTCCCGGATCATCTAGTCAGCGAACATCAGTACAATCGACTAGCAGCAGCAGCAGTCCACGGCTTCGCAGAAAGAACACAG CAAGATGAGCCTACAGAACGGTAGCGGCAATCGTGGCCACCACGGCAAGGA TCGGCCAAGCGGTTCTCCATACACGACGCG TCGAGGAGG AACGGACGAGGTAA TAAGGTGTACG ] [+] EMBL BM606648 [ ccgCGCTGCAGAACGACCGGAAG AAGCGCACAAAATGCGGCACGGAACTGGCTCGCCTCCAGTCCGTCCTTGCTGAGCAGCTGCTGCGCCATCAGAAACACAACACAACTCCAGCGTCATCG TCGCCG TCTCGCCTTCGACAAGCGTAAATCAGGTGTGAAAATCGGAGAGTCCGTCGATTGTTGTTCTAGCGGTGTAACGCCCTGCTTCGTTAGAACGGAATAACAGCACAGCGACAACTGGTCGGACGGAAACCCCGTCCCGCGGGGACCTGTCTATTTGGTCGGCTGAAGTGAAA C C CCCGC CCCATCGAACAGCATCAGTTCATCTAAGTATGCTCTCCAGCAGTAGAAGCATAGCGACAAAGAAAGCGTAGAACGGTCCCGGATCATCTAGTCAGCGGA ATCATAACAATCGACTAGCAGCAGCAGCAGTCCACGGCTTTGCAGAAAGAACACAGCCAAGATGAGCCTACAGAACGGTAGCGGCAATCGTGGCCACCACGGCAAGGATTCGGCCAAGCGGTTCTCCATACACGACGCGTTCGAGGAGGAAACGGACGAGGTAATTAAGGTGTACGGCTCGACCGTCATCAGTACACCGATGCGGGCGAAGGCGCGCTCCCCGGACGATGTGTCGATTAGAATACACGATCAAAGGGATAGTGATTCGCTGATACAG] [+] EMBL BM619203 [ ccgG TCGCCG TCTCGCCGTCAACAAGCGTAAATCAGGTGTGAAAATCG GAGTCCGTCGA TTGTTCTAGCGGTGTAACGCCCTGCTTCGTTACAACGGAATAACAGCGCAGCGACAACTGGTCGGACGGAAACCACGTCCCGCGGGGGCCTGCCTATTTGTTCGGCTGAAGTGAAATCAAAC AGCCC CCCATCAAACAGCATCAGTTCATCTAAGTATGCTCTCCAGCAGTTGAAGCATAGCGACAAAGAAAGCGTAGAACGGTCCCGGATCATCTAGTCAGCGGA ATCAGAACAATCGACTAGCAGCAGCAGCAGTCCACGGCTTCGCAGAAAGAACACAGCCAAGATGAGCCTACAGAACGGTAGCGGCAATCGTGGCCACCACGGCAAGGATTCGGCCAAGCGGTTCTCCATACACGACGCGTTCGAGGAGGAAACGGACGAGGTAATTAAGGTGTACGGCTCG ] consensusID : consensus_7376#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 822 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGAAACGGACGAGGTAATTAAGGTGTACGGCTCGACCGTCATCAGTACACCGATGCGGGCGAAGGCGCGCTCCCCGGACGATGTGTCGATTAGAATACACGATCAAAGGGATAGTGATTCGCTGATACAGGAGTACGGGCACCTGTCGGCGAGCGAATCGTACACCTACTGCTGGCGGCACCCGAAGGTGCGGGAAAACTGGCGCACGGTGCTGGCCGCATTCGCCCTGCTGATCATCGGCATCGGACTGATCGTGATGGGTGCGTACGCGCTGGTCGAACCACACAACGGATCGCAGGCGGCCGTGTTTTTCGTCGCCGGCTTCATCTGCTTCGTCCCCGGCGCGTACCACGTCGTGTACATCTGGCTGGCGGCCCGCGGCTACCGAGGATTTGACTTCTACCACCTACCGCTTTTCACGTAATAAGTGTGTGTGTGTGTGGAAAATAGAACACCAGCGCGGGAAGGAAGTACACCGGCAGTAAGAGGTGAGACCGAATTTTCGACTGTGCGTTCGGGGTTTCGGGGGAAGGCCAGGGTCAACGGCGGCAGGGGCCACGCCATTTAGCTTAGTTTTTTGCGGCAGTTTTATAGAATTACTTACGATAACAACGGGCAAAAGACTTGCGAACAAGCGGTTTGTTCGCGGTTTACCTTTTTCTACGCTACGCTATCTTGTTTTCGTATGCCGAGAAAGGATCTAGTAGGCTAGTAGTGAGAGAAAACATGTAGAAGATTCATCACGTTTTCCTTTCCCAAAGCATAATGTGAAGAATAGCGAATGATGATGATGATGA] [+] EMBL BM576895 [CCGCCCACGCGTCCGCCCACGCGTCCGAAACGGACGAGGTAATTAAGGTGTACGGCTCGACCGTCATCAGTACACCGATGCGGGCGAAGGCGCGCTCCCCGGACGATGTGTCGATTAGAATACACGATCAAAGGGATAGTGATTCGCTGATACAGGAGTACGGGCACCTGTCGGCGAGCGAATCGTACACCTACTGCTGGCGGCACCCGAAGGTGCGGGAAAACTGGCGCACGGTGCTGGCCGCATTCGCCCTGCTGATCATCGGCATCGGACTGATCGTGATGGGTGCGTACGCGCTGGTCGAACCACACAACGGATCGCAGGCGGCCGTGTTTTTCGTCGCCGGCTTCATCTGCTTCGTCCCCGGCGCGTACCACGTCGTGTACATCTGGCTGGCGGCCCGCGGCTACCGAGGATTTGACTTCTACCACCTACCGCTTTTCACGTAATAAGTGTGTGTGTGTGTGGAAAATAGAACACCAGCGCGGGAAGGAAGTACACCGGCAGTAAGAGGTGAGACCGAATTTTCGACTGTGCGTTCGGGGTTTCGGGGGAAGGCCAGGGTCAACGGCGGCAGGGGCCACGCCATTTAGCTTAGTTTTTTGCGGCAGTTTTATAGAATT ] [+] EMBL BX628309 [ CGGGCACCTGTCGGCGAGCGAATCGTACACCTACTGCTGGCGGCACCCGAAGGTGCGGGAAAACTGGCGCACGGTGCTGGCCGCATTCGCCCTGCTGATCATCGGCATCGGACTGATCGTGATGGGTGCGTACGCGCTGGTCGAACCACACAACGGATCGCAGGCGGCCGTGTTTTTCGTCGCCGGCTTCATCTGCTTCGTCCCCGGCGCGTACCACGTCGTGTACATCTGGCTGGCGGCCCGCGGCTACCGAGGATTTGACTTCTACCACCTACCGCTTTTCACGTAATAAGTGTGTGTGTGTGTGGAAAATAGAACACCAGCGCGGGAAGGAAGTACACCGGCAGTAAGAGGTGAGACCGAATTTTCGACTGTGCGTTCGGGGTTTCGGGGGAAGGCCAGGGTCAACGGCGGCAGGGGCCACGCCATTTAGCTTAG TTTTTGCGGCAGTTTTATAGAATTACTTACGATAACAACGGGCAAAAGACTTGCGAACAAGCGGTTTGTTCGCGGTTTACCTTTTTCTACGCTACGCTATCTTGTTTTCGTATGCCGAGAAAGGATCTAGTAGGCTAGTAGTGAGAGAAAACATGTAGAAGATTCATCACGTTTTCCTTTCCCAAAGCATAATGTGAAGAATAGCGAATGATGATGATGATGA] consensusID : consensus_7376#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [CCGAGAACGCACAAAATGCGGCACGGAACTGGCTCGCCTCCAGCCCGTCCTTGCTGAGCAGCTGCTGCGCCATCAGAAACACAACACAACTCCAGCGTCATCGTCGCCGTCTCGCCGTCAACAAGCGTAAATGTATGTTAATGAGCCTCTTCATCTGCCGCTCCGTTTAGCGTACAGCGTTTCCTCTGTCCCACTACAGCAGGTGTGAAAATCGGAGTCCGTCGATTGTTCTAGCGGTGTAACGCCCTGCTTCGTTACAACGGAATAACAGCGCAGCGACAACTGGTCGGACGGAAACCACGTCCCGCGGGGGCCTGCCTATTTGTTCGGCTGAAGTGAAATCAAACAGCCCCCCATCAAACAGCATCAGTTCATCTAAGTATGCTCTCCAGCAGTTGAAGCATAGCGACAAAGAAAGCGTAGAACGGTCCCGGATCATCTAGTCAGCGGAATCAGAACAATCGACTAGCAGCAGCAGCAGTCCACGGCTTCGCAGAAAGAACACAGCCAAGATGAGCCTACAGAACGGTAGCGGCAATCGTGGCCACCACGGCAAGGATTCCGGCCAAGCGGTTCTCCATACACGACGCGTTCGAGGAGGAAACGGACGAGGTAATTTAAGGTGTACGGCTCGACCGTCATCAGTACACCGATGCGGGCGAAGG] [+] EMBL BM601718 [CCGAGAACGCACAAAATGCGGCACGGAACTGGCTCGCCTCCAGCCCGTCCTTGCTGAGCAGCTGCTGCGCCATCAGAAACACAACACAACTCCAGCGTCATCGTCGCCGTCTCGCCGTCAACAAGCGTAAATGTATGTTAATGAGCCTCTTCATCTGCCGCTCCGTTTAGCGTACAGCGTTTCCTCTGTCCCACTACAGCAGGTGTGAAAATCGGAGTCCGTCGATTGTTCTAGCGGTGTAACGCCCTGCTTCGTTACAACGGAATAACAGCGCAGCGACAACTGGTCGGACGGAAACCACGTCCCGCGGGGGCCTGCCTATTTGTTCGGCTGAAGTGAAATCAAACAGCCCCCCATCAAACAGCATCAGTTCATCTAAGTATGCTCTCCAGCAGTTGAAGCATAGCGACAAAGAAAGCGTAGAACGGTCCCGGATCATCTAGTCAGCGGAATCAGAACAATCGACTAGCAGCAGCAGCAGTCCACGGCTTCGCAGAAAGAACACAGCCAAGATGAGCCTACAGAACGGTAGCGGCAATCGTGGCCACCACGGCAAGGATTCCGGCCAAGCGGTTCTCCATACACGACGCGTTCGAGGAGGAAACGGACGAGGTAATTTAAGGTGTACGGCTCGACCGTCATCAGTACACCGATGCGGGCGAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7376#0 CCGCGAAAACGGGCCGTCTATATATGGATTTCCTGCTTGTTCCCGCACACTCCTGTCGGC 60 consensus_7376#2 ------------------------------------------------------------ consensus_7376#1 -----------------CCGCCCACGCGTCCGCCCACGCGTCCGAAACGGACGAGGTAAT 43 consensus_7376#0 CATGTTTTCGGACGGCGCAGTCCTTTATAAGTTCTAAACAAAGTGTAACCCGCTCCGCCA 120 consensus_7376#2 ------------------------------------------------------------ consensus_7376#1 TAAGGTGTACGGCTCGACCGTCATCAGTACAC-CGATGCGGGCGAAGGCGCGCTCCCCGG 102 consensus_7376#0 TCAACCGTCGGTGCCGTAGGTGTGATTGCAAGAACCTCCGCCCGCTGCAGAACGACCGGA 180 consensus_7376#2 ----------------------------------------------------------CC 2 consensus_7376#1 ACGATGTGTCGATTAGAATACACGATCAAAGGGATAGTGATTCGCTGATACAGGAGTACG 162 consensus_7376#0 AGAAGCGCACAAAATGCGGCACGGAACTGGCTCGCCTCCAGT--CCGTCCTTGCTGAGCA 238 consensus_7376#2 GAGAACGCACAAAATGCGGCACGGAACTGGCTCGCCTCCAGC--CCGTCCTTGCTGAGCA 60 consensus_7376#1 GGCACCTGTCGGCGAGCGAATCGTACACCTACTGCTGGCGGCACCCGAAGGTGCGGGAAA 222 * * * *** ** * ** * * *** *** * * consensus_7376#0 GCTGCTGCGCCATCAGAAACACAACACAACTCCAGCGTCATCGTCGCCGTCTCGCCTTCG 298 consensus_7376#2 GCTGCTGCGCCATCAGAAACACAACACAACTCCAGCGTCATCGTCGCCGTCTCGCCGTCA 120 consensus_7376#1 ACTGGCGCACGGTGCTGGCCGCATTCGCCCTGCTG-ATCATCGGCATCGGACTGATCGTG 281 *** ** * * * ** ** * * ****** * ** * consensus_7376#0 ACAAGCGTAAAT------------------------------------------------ 310 consensus_7376#2 ACAAGCGTAAATGTATGTTAATGAGCCTCTTCATCTGCCGCTCCGTTTAGCGTACAGCGT 180 consensus_7376#1 ATGGGTGCGTACG------------------CGCTGGTCGAACCACACAACGGATCGCA- 322 * * * * consensus_7376#0 -------------------CAGGTGTGAAAATCGGAGAGTCCGTCGATTGTTGTTCTAGC 351 consensus_7376#2 TTCCTCTGTCCCACTACAGCAGGTGTGAAAATCGGAG--TCCGTCGATTG---TTCTAGC 235 consensus_7376#1 -----------------GGCGGCCGTGTTTTTCGTCGCCGGCTTCATCTG---CTTCGTC 362 * * *** *** * * ** ** * * consensus_7376#0 GGTGTAACGCCCTGCTTCGT-TAGAACGGAATAACAGC--ACAGCGACAACTGGTCGGAC 408 consensus_7376#2 GGTGTAACGCCCTGCTTCGT-TACAACGGAATAACAGC--GCAGCGACAACTGGTCGGAC 292 consensus_7376#1 CCCGGCGCGTACCACGTCGTGTACATCTGGCTGGCGGCCCGCGGCTACCGAGGATTTGAC 422 * ** * * **** ** * * * * * ** * ** ** * * *** consensus_7376#0 GGAAACCCCGTCCCGCG------GGGACCTGTCTATTTGGTCGGCTGAAGTGAAACCCC- 461 consensus_7376#2 GGAAACCACGTCCCGCG------GGGGCCTGCCTATTTGTTCGGCTGAAGTGAAATCAAA 346 consensus_7376#1 TTCTACCACCTACCGCTTTTCACGTAATAAGTGTGTGTGTGTGTGGAAAATAGAACACC- 481 *** * * **** * * * * ** * ** * ** consensus_7376#0 ---CGCCCCATCGAACAGCATCAGTTCATCTAAGTATGCTCTCCAGCAGTAGAAGCATAG 518 consensus_7376#2 CAGCCCCCCATCAAACAGCATCAGTTCATCTAAGTATGCTCTCCAGCAGTTGAAGCATAG 406 consensus_7376#1 -AGCGCGGGAAGGAAGTACACCGG--CAGTAAGAGGTGAGACCGAATTTTCGA--CTGTG 536 * * * ** ** * * ** * ** * * * ** * * consensus_7376#0 CGACAAAGAAAGCGTAGAACGGTCCCGGATCATCTAGTCAGCGGAATCATAACAATCGAC 578 consensus_7376#2 CGACAAAGAAAGCGTAGAACGGTCCCGGATCATCTAGTCAGCGGAATCAGAACAATCGAC 466 consensus_7376#1 CGTTCGGGGTTTCGGGGGAAGG-CCAGGGTCAAC-GGCGGCAGGGGCCACGCCATTTAGC 594 ** * ** * * ** ** ** *** * * ** ** ** * * consensus_7376#0 TAG--CAGCAGCAGCAGTCC-ACGGCTTTGCAGAAAGAACACAGCCAAGATGAGCCTACA 635 consensus_7376#2 TAG--CAGCAGCAGCAGTCC-ACGGCTTCGCAGAAAGAACACAGCCAAGATGAGCCTACA 523 consensus_7376#1 TTAGTTTTTTGCGGCAGTTTTATAGAATTACTTAC-GATAACAACGGGCAAAAGACTTGC 653 * ** ***** * * * * * ** *** * * ** ** consensus_7376#0 GAACGGTAGCGGCAATCGTGGCCACCACGGCAAGGATTC-GGCCAAGCGGTTCTC-CATA 693 consensus_7376#2 GAACGGTAGCGGCAATCGTGGCCACCACGGCAAGGATTCCGGCCAAGCGGTTCTC-CATA 582 consensus_7376#1 GAACAAGCGGTTTGTTCGCGGTTTACCTTTTTCTACGCTACGCTATCTTGTTTTCGTATG 713 **** * *** ** * ** * *** ** ** consensus_7376#0 C-ACGACGCGTTCGAGGAGGAAACGGACGAGGTAA------TT-AAGGTGTACGGC-TCG 744 consensus_7376#2 C-ACGACGCGTTCGAGGAGGAAACGGACGAGGTAA------TTTAAGGTGTACGGC-TCG 634 consensus_7376#1 CCGAGAAAGGATCTAGTAGGCTAGTAGTGAGAGAAAACATGTAGAAGATTCATCACGTTT 773 * ** * ** ** *** * *** ** * *** * * * * consensus_7376#0 ACCGTCATCAGTACACCGATGCGGGCGAAGGCGCGCTCCCCGGACGATGTGTCGATTAGA 804 consensus_7376#2 ACCGTCATCAGTACACCGATGCGGGCGAAGG----------------------------- 665 consensus_7376#1 TCCTTTCCCAAAGCAT-AATGTGAAGAATAGCGAATGATGATGATGATGA---------- 822 ** * ** ** *** * * * consensus_7376#0 ATACACGATCAAAGGGATAGTGATTCGCTGATACAG 840 consensus_7376#2 ------------------------------------ consensus_7376#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||