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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1453 fasta sequence
[CACATGCCTGCTCTTTTTTTTATTTTTTTTGACATTTTCATTCCTTAAGGTATTTTAAAACATTTCGTTTTATTATATCTTTCAGTAGTAGCTTACGAATAGTTATTACAAGTTATAGCTTTCAGTTGTAGCCCGTTTCTCTGCACTCTGTTCGTGATCTCCTTGCTCATCTTTCGGTCTCAGCACGAGACTGCTGACCTTGTAAATCCTCCGCAAGGACGTCAAGATTTCAATGTCAAATGATCGTATGAACACATAAAAAAAGGAATCATATCCCGCCCCTTGTTAATCCTCTCTCTCCCTCTCCATCTAGCGCGTTAAGAACTTTACAATA-TTTACGGCTGTACTGTAATGTAGCAACGGTTAAACATATAAAAGCGACAAAACAGAAAAAGCACAAAGAAAAAAGTCCGAATGAGGATGAGTAACGCTGATGAAATAGTTTATACGAGCTATTGGGTGAAAATACTCGACAACTAAACTAAACTAAAATATGGATGAAGAAATGTTTTGCAGAGGAAATGCACTGTCGCCACGATTGCTGAGAATTTGTTATTCCTTTCTATGACGTTTTCTCGGTAAACCCGGGCACTATAGCTGCAATAGTGTACCATCACCCCCTCTCTTTACAGATAACAACGGATAATTGTAATATGCCTTGTTTTCCTCTCTGTTCTCTTCGTTTTACAGTTTCTAAACAGCTGTAAGTACAACCTTGCAGCATCATTGCGTCCAACCAGAGCATGGTATAGGGGCCGCCACGTGTGGCACTGGCTCCACAATCAATCTTTACGTCCCCCTTTTCCATCCCTTTTGCAGTAGAGTGTGTGCAATACACAAACATTTGAGTGTGTTTTGTTGCAGTTGTTGCGCGATTTTACACGAATATCCCTCCCCCACTAAATTCCATCGGCTGTGAGCAACATTCGATTCCATGTCCATCGAATTTGTCAGAAATTATCCCCCGTTTTCCCACCACAATGGCGGCGGAGTGGTCCGCCGCCCTAATTCCATCCGTCTCAGTACGGTGCGTATCGATGGGTGGGCGACGGTCCGCGCAGCCCACGCCGATCGTCGAACGAGTCGCGGCTAAAGTCTTCGTACACGCCGAACCGGCTGATGCTGCTCGTACCGTTCCGGCTGGCCGGTGGTGGCGTTCGGCGGCTAAAGATCGCCTCGTAGCTGCTGCTGCTGGCCCGGCTGCTTTCCGTGACGCTGCGCCGCATCAGCGGCGGTATCGGCGGCATCGGTTCCCGCCTCATGGGGGGAAAATCACGTCCCCGGATGCCGTACCGGCGTTCGAACAGGTCGCGCGGATCCTCATACCGGTCGTAGTAGTCAAAGGTGTCCTTGCCGTACCAGCCGGGCGACAAATCGGAGGCACGTGAATGTAATTTACACCTGAAAAAGGGGCCCACAAATTTAAGCCCTTTTCCGAGATCGGCTTTTCCGG]
[+] EMBL BX466888 [CACATGCCTGCTCTTTTTTTTATTTTTTTTGACATTTTCATTCCTTAAGGTATTTTAAAACATTTCGTTTTATTATATCTTTCAGTAGTAGCTTACGAATAGTTATTACAAGTTATAGCTTTCAGTTGTAGCCCGTTTCTCTGCACTCTGTTCGTGATCTCCTTGCTCATCTTTCGGTCTCAGCACGAGACTGCTGACCTTGTAAATCCTCCGCAAGGACGTCAAGATTTCAATGTCAAATGATCGTATGAACACATAAAAAAAGGAATCATATCCCGCCCCTTGTTAATCCTCTCTCTCCCTCTCCATCTAGCGCGTTAAGAACTTTACAATATTTTACGGCTGTACTGTAATGTA CAACGGTTAAACATATAAAAGCGACAAAACAGAAAAAGCACAAAGAAAAAAGTCCGAATGAGGATGAGTAACGCTGATGAAATAGTTTATACGAGCTATTGGGTGAAAATACTC ]
[+] EMBL CNS08VXN [ ATTTTAAAACATTTCGTTTTATTATATCTTTCAGTAGTAGCTTACGAATAGTTATTACAAGTTATAGCTTTCAGTTGTAGCCCGTTTCTCTGCACTCTGTTCGTGATCTCCTTGCTCATCTTTCGGTCTCAGCACGAGACTGCTGACCTTGTAAATCCTCCGCAAGGACGTCAAGATTTCAATGTCAAATGATCGTATGAACACATAAAAAAAGGAATCATATCCCGCCCCTTGTTAATCCTCTCTCTCCCTCTCCATCTAGCGCGTTAAGAACTTTACAATA TTTACGGCTGTACTGTAATGTAGCAACGGTTAAACATATAAAAGCGACAAAACAGAAAAAGCACAAAGAAAAAAGTCCGAATGAGGATGAGTAACGCTGATGAAATAGTTTATACGAGCTATTGGGTGAAAATACTCGACAACTAAACTAAACTAAAATATGGATGAAGAAATGTTTTGCAGAGGAAATGCACTGTCGCCACGATTGCTGAGAATTTGTTATTCCTTTCTATGACGTTTTCTCGGTAAACCCGGGCACTATAGCTGCAATAGTGTACCATCACCCCCTCTCTTTACAGATAACAACGGATAATTGTAATATGCCTTGTTTTCCTCTCTGTTCTCTTCGTTTTACAGTTTCTAAACAGCTGTAAGTACAACCTTGCAGCATCATTGCGTCCAACCAGAGCATGGTATAGGGGCCGCCACGTGTGGCACTGGCTCCACAATCAATCTTTACGTCCCCCTTTTCCATCCCTTTTGCAGTAGAGTGTGTGCAATACACAAACATTTGAGTGTGTTTTGTTGCAGTTGTTGCGCGATTTTACACGAATATCCCTCCCCCACTAAATTCCATCGGCTGTGAGCAACATTCGATTCCATGTCCATCGAATTTGTCAGAAATTATCCCCCGTTTTCCCACCACAATGGCGGCGGAGTGGTCCGCCGCCCTAATTCCATCCGTCTCAGTACGGTGCGTATCGATGGGT ]
[+] EMBL CNS08WXH [ CATTTCGTTTTATTATATCTTTCAGTAGTAGCTTACGAATAGTTATTACAAGTTATAGCTTTCAGTTGTAGCCCGTTTCTCTGCACTCTGTTCGTGATCTCCTTGCTCATCTTTCGGTCTCAGCACGAGACTGCTGACCTTGTAAATCCTCCGCAAGGACGTCAAGATTTCAATGTCAAATGATCGTATGAACACATAAAAAAAGGAATCATATCCCGCCCCTTGTTAATCCTCTCTCTCCCTCTTCATCTAGCGCGTTAAGAACTTTACAATA TTTACGGCTGTACTGTAATGTAGCAACGGTTAAACATATAAAAGCGACAAAACAGAAAAAGCACAAAGAAAAAAGTCCGAATGAGGATGAGTAGCGCTGATGATTTAGTTTATACGAGCTATTGGGTGAAAATACTCGACAACTAAACTAAACTAAAATATGGATGAAGAAATGTTTTGCAGAGGAAATGCACTGTCGCCACGATTGCTGAGAATTTGTTATTCCTTTCTATAAAAAAAACTCGGTAAACCCGGGGACTATAGCTGCAATAGTGTACCATCCCCCCCTCTCTTTACAGTTTACAACGGATAATTGTAATATGCCTTGTTTTCCTCTCTGTTCTCTTCGTTTTACAGTTTCTAAACAGCTGTAAGTACAACCTTGCAGCATCATTGCGTCCAACCAGAGCATGGTATAGGGGCCGCCACGTGTGGCACTGGCTCCACAATCAATCTTTACGTCCCCCTTTTCCATCCCTTTTGCAGTAGAGTGTGTTCAATACACAAACATTTGAGTGTGTTTTGTTGCAGTTGTTGCGCGATTTTACACGAATATCCCTCCCCCACTAAATTCCATCGGCTGTGAGCAACATTCGATTCCATGTCCATCGAATTTGTCAGAAATTATCCCCCGTTTTCCCACCACAAT ]
[-] EMBL CNS08VXM [ ATACGAGCTATTGGGTGAAAATACTCGACAACTAAACTAAACTAAAATATGGATGAAGAAATGTTTTGCAGAGGAAATGCACTGTCGCCACGATTGCTGAGAATTTGTTATTCCTTTCTATGACGTTTTCTCGGTAAACCCGGGCACTATAGCTGCAATAGTGTACCATCACCCCCTCTCTTTACAGATAACAACGGATAATTGTAATATGCCTTGTTTTCCTCTCTGTTCTCTTCGTTTTACAGTTTCTAAACAGCTGTAAGTACAACCTTGCAGCATCATTGCGTCCAACCAGAGCATGGTATAGGGGCCGCCACGTGTGGCACTGGCTCCACAATCAATCTTTACGTCCCCCTTTTCCATCCCTTTTGCAGTAGAGTGTGTGCAATACACAAACATTTGAGTGTGTTTTGTTGCAGTTGTTGCGCGATTTTACACGAATATCCCTCCCCCACTAAATTCCATCGGCTGTGAGCAACATTCGATTCCATGTCCATCGAATTTGTCAGAAATTATCCCCCGTTTTCCCACCACAATGGCGGCGGAGTGGTCCGCCGCCCTAATTCCATCCGTCTCAGTACGGTGCGTATCGATGGGTGGGCGACGGTCCGCGCAGCCCACGCCGATCGTCGAACGAGTCGCGGCTAAAGTCTTCGTACACGCCGAACCGGCTGATGCTGCTCGTA ]
[-] EMBL BM590129 [ GACGGTCCGCGCAGCCCACGCCGATCGTCGAACGAGTCGCGGCTAAAGTCTTCGTACACGCCGAACCGGCTGATGCTGCTCGTACCGTTCCGGCTGGCCGGTGGTGGCGTTCGGCGGCTAAAGATCGCCTCGTAGCTGCTGCTGCTGGCCCGGCTGCTTTCCGTGACGCTGCGCCGCATCAGCGGCGGTATCGGCGGCATCGGTTCCCGCCTCATGGGGGGAAAATCACGTCCCCGGATGCCGTACCGGCGTTCGAACAGGTCGCGCGGATCCTCATACCGGTCGTAGTAGTCAAAGGTGTCCTTGCCGTACCAGCCGGGCGACAAATCGGAGGCACGTGAATGTAATTTACACCTGAAAAAGGGGCCCACAAATTTAAGCCCTTTTCCGAGATCGGCTTTTCCGG]
[+] EMBL CNS09JIR [ AACATCGCCTCGTAGCTGCTGCTGCTGGCCCGGCTGCTTTCCGTGACGCTGCGCCGCATCAGCGGGGGTATCGGCGGCATCGGTTC ]
consensusID : consensus_7379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 950 fasta sequence
[AGAAAAAGCACAAAGAAAAAAGTCCGAATGAGGATGAGTAGCGCTGATGAAATAGTTTATACGAGCTATTGGGTGAAAATACTCGACAACTAAACTAAACTAAAATATGGATGAAGAAATGTTTTGCAGAGGAAATGCACTGTCGCCACGATTGCTGAGAATTTGTTATTCCTTTCTATGACGTTTTCTCGGTAAACCCGGGCACTATAGCTGCAATAGTGTACCATCACCCCCTCTCTTTACAGATAACAACGGATAATTGTAATATGCCTTGTTTTCCTCTCTGTTCTCTTCGTTTTACAGTTTCTAAACAGCTGTAAGTACAACCTTGCAGCATCATTGCGTCCAACCAGAGCATGGTATAGGGGCCGCCACGTGTGGCACTGGCTCCAAAATCAAGCTTTACGTCCCCCTTGGCCATCCCTTTTGCAGTAGAGTGTGTGCAATACACAAATTTTTTTGTGTGTTTTGTTGCAGTTGTTGCGCGATTTTACACGAATATCCCTCCCCCACTAAATTCCATCGGCTGTGAGCAACATTCGATTCCATGTCCATCGAATTTGTCAGAAATTATCCCCCGTTTAAACACCACAATGGCGGCGGGGTGGTCCGCCGCCCTAATTCCATCCGTCTCAGTACGGTGCGCATCGATGGGTGGGCGACGGTCCGCGCAGCCCACGCCGATCGTCGAACGAGTCGCGGCTAAAGTCTTCGTACACGCCGAACCGGCTGATGCTGCTCGTACGTTCCGGCTGGCGGCATCGGTTCCCGCCTCATGGGGGGAAAATCACGTCCCCGGATGCGTACCGGCGTTCGAACAGGTCGCGCGGATCCTCATACCGGTCGTAGTAGTCAAAGGTGTCCTTGCCGTACCAGCCGGGCGACAAATTGGAGGCACGTGAATGTAATTTACACGTGAAAAAGGGCCCACAATTTTAAGCCCTTTTCCG]
[-] EMBL CNS08WXG [AGAAAAAGCACAAAGAAAAAAGTCCGAATGAGGATGAGTAGCGCTGATGAAATAGTTTATACGAGCTATTGGGTGAAAATACTCGACAACTAAACTAAACTAAAATATGGATGAAGAAATGTTTTGCAGAGGAAATGCACTGTCGCCACGATTGCTGAGAATTTGTTATTCCTTTCTATGACGTTTTCTCGGTAAACCCGGGCACTATAGCTGCAATAGTGTACCATCACCCCCTCTCTTTACAGATAACAACGGATAATTGTAATATGCCTTGTTTTCCTCTCTGTTCTCTTCGTTTTACAGTTTCTAAACAGCTGTAAGTACAACCTTGCAGCATCATTGCGTCCAACCAGAGCATGGTATAGGGGCCGCCACGTGTGGCACTGGCTCCAAAATCAAGCTTTACGTCCCCCTTGGCCATCCCTTTTGCAGTAGAGTGTGTGCAATACACAAATTTTTTTGTGTGTTTTGTTGCAGTTGTTGCGCGATTTTACACGAATATCCCTCCCCCACTAAATTCCATCGGCTGTGAGCAACATTCGATTCCATGTCCATCGAATTTGTCAGAAATTATCCCCCGTTTAAACACCACAATGGCGGCGGGGTGGTCCGCCGCCCTAATTCCATCCGTCTCAGTACGGTGCGCATCGATGGGTGGGCGACGGTCCGCGCAGCCCACGCCGATCGTCGAACGAGTCGCGGCTAAAGTCTTCGTACACGCCGAACCGGCTGATGCTGCTCGTACGTTCCGGCTGGCGGCATCGGTTCCCGCCTCATGGGGGGAAAATCACGTCCCCGGATGCGTACCGGCGTTCGAACAGGTCGCGCGGATCCTCATACCGGTCGTAGTAGTCAAAGGTGTCCTTGCCGTACCAGCCGGGCGACAAATTGGAGGCACGTGAATGTAATTTACACGTGAAAAAGGGCCCACAATTTTAAGCCCTTTTCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7379#0 CACATGCCTGCTCTTTTTTTTATTTTTTTTGACATTTTCATTCCTTAAGGTATTTTAAAA 60
consensus_7379#1 ------------------------------------------------------------
consensus_7379#0 CATTTCGTTTTATTATATCTTTCAGTAGTAGCTTACGAATAGTTATTACAAGTTATAGCT 120
consensus_7379#1 ------------------------------------------------------------
consensus_7379#0 TTCAGTTGTAGCCCGTTTCTCTGCACTCTGTTCGTGATCTCCTTGCTCATCTTTCGGTCT 180
consensus_7379#1 ------------------------------------------------------------
consensus_7379#0 CAGCACGAGACTGCTGACCTTGTAAATCCTCCGCAAGGACGTCAAGATTTCAATGTCAAA 240
consensus_7379#1 ------------------------------------------------------------
consensus_7379#0 TGATCGTATGAACACATAAAAAAAGGAATCATATCCCGCCCCTTGTTAATCCTCTCTCTC 300
consensus_7379#1 ------------------------------------------------------------
consensus_7379#0 CCTCTCCATCTAGCGCGTTAAGAACTTTACAATATTTACGGCTGTACTGTAATGTAGCAA 360
consensus_7379#1 ------------------------------------------------------------
consensus_7379#0 CGGTTAAACATATAAAAGCGACAAAACAGAAAAAGCACAAAGAAAAAAGTCCGAATGAGG 420
consensus_7379#1 ---------------------------AGAAAAAGCACAAAGAAAAAAGTCCGAATGAGG 33
*********************************
consensus_7379#0 ATGAGTAACGCTGATGAAATAGTTTATACGAGCTATTGGGTGAAAATACTCGACAACTAA 480
consensus_7379#1 ATGAGTAGCGCTGATGAAATAGTTTATACGAGCTATTGGGTGAAAATACTCGACAACTAA 93
******* ****************************************************
consensus_7379#0 ACTAAACTAAAATATGGATGAAGAAATGTTTTGCAGAGGAAATGCACTGTCGCCACGATT 540
consensus_7379#1 ACTAAACTAAAATATGGATGAAGAAATGTTTTGCAGAGGAAATGCACTGTCGCCACGATT 153
************************************************************
consensus_7379#0 GCTGAGAATTTGTTATTCCTTTCTATGACGTTTTCTCGGTAAACCCGGGCACTATAGCTG 600
consensus_7379#1 GCTGAGAATTTGTTATTCCTTTCTATGACGTTTTCTCGGTAAACCCGGGCACTATAGCTG 213
************************************************************
consensus_7379#0 CAATAGTGTACCATCACCCCCTCTCTTTACAGATAACAACGGATAATTGTAATATGCCTT 660
consensus_7379#1 CAATAGTGTACCATCACCCCCTCTCTTTACAGATAACAACGGATAATTGTAATATGCCTT 273
************************************************************
consensus_7379#0 GTTTTCCTCTCTGTTCTCTTCGTTTTACAGTTTCTAAACAGCTGTAAGTACAACCTTGCA 720
consensus_7379#1 GTTTTCCTCTCTGTTCTCTTCGTTTTACAGTTTCTAAACAGCTGTAAGTACAACCTTGCA 333
************************************************************
consensus_7379#0 GCATCATTGCGTCCAACCAGAGCATGGTATAGGGGCCGCCACGTGTGGCACTGGCTCCAC 780
consensus_7379#1 GCATCATTGCGTCCAACCAGAGCATGGTATAGGGGCCGCCACGTGTGGCACTGGCTCCAA 393
***********************************************************
consensus_7379#0 AATCAATCTTTACGTCCCCCTTTTCCATCCCTTTTGCAGTAGAGTGTGTGCAATACACAA 840
consensus_7379#1 AATCAAGCTTTACGTCCCCCTTGGCCATCCCTTTTGCAGTAGAGTGTGTGCAATACACAA 453
****** *************** ************************************
consensus_7379#0 ACATTTGAGTGTGTTTTGTTGCAGTTGTTGCGCGATTTTACACGAATATCCCTCCCCCAC 900
consensus_7379#1 ATTTTTTTGTGTGTTTTGTTGCAGTTGTTGCGCGATTTTACACGAATATCCCTCCCCCAC 513
* *** ****************************************************
consensus_7379#0 TAAATTCCATCGGCTGTGAGCAACATTCGATTCCATGTCCATCGAATTTGTCAGAAATTA 960
consensus_7379#1 TAAATTCCATCGGCTGTGAGCAACATTCGATTCCATGTCCATCGAATTTGTCAGAAATTA 573
************************************************************
consensus_7379#0 TCCCCCGTTTTCCCACCACAATGGCGGCGGAGTGGTCCGCCGCCCTAATTCCATCCGTCT 1020
consensus_7379#1 TCCCCCGTTTAAACACCACAATGGCGGCGGGGTGGTCCGCCGCCCTAATTCCATCCGTCT 633
********** ***************** *****************************
consensus_7379#0 CAGTACGGTGCGTATCGATGGGTGGGCGACGGTCCGCGCAGCCCACGCCGATCGTCGAAC 1080
consensus_7379#1 CAGTACGGTGCGCATCGATGGGTGGGCGACGGTCCGCGCAGCCCACGCCGATCGTCGAAC 693
************ ***********************************************
consensus_7379#0 GAGTCGCGGCTAAAGTCTTCGTACACGCCGAACCGGCTGATGCTGCTCGTACCGTTCCGG 1140
consensus_7379#1 GAGTCGCGGCTAAAGTCTTCGTACACGCCGAACCGGCTGATGCTGCTCGTAC-GTTCCGG 752
**************************************************** *******
consensus_7379#0 CTGGCCGGTGGTGGCGTTCGGCGGCTAAAGATCGCCTCGTAGCTGCTGCTGCTGGCCCGG 1200
consensus_7379#1 CTGGC------------------------------------------------------- 757
*****
consensus_7379#0 CTGCTTTCCGTGACGCTGCGCCGCATCAGCGGCGGTATCGGCGGCATCGGTTCCCGCCTC 1260
consensus_7379#1 ------------------------------------------GGCATCGGTTCCCGCCTC 775
******************
consensus_7379#0 ATGGGGGGAAAATCACGTCCCCGGATGCCGTACCGGCGTTCGAACAGGTCGCGCGGATCC 1320
consensus_7379#1 ATGGGGGGAAAATCACGTCCCCGGATGC-GTACCGGCGTTCGAACAGGTCGCGCGGATCC 834
**************************** *******************************
consensus_7379#0 TCATACCGGTCGTAGTAGTCAAAGGTGTCCTTGCCGTACCAGCCGGGCGACAAATCGGAG 1380
consensus_7379#1 TCATACCGGTCGTAGTAGTCAAAGGTGTCCTTGCCGTACCAGCCGGGCGACAAATTGGAG 894
******************************************************* ****
consensus_7379#0 GCACGTGAATGTAATTTACACCTGAAAAAGGGGCCCACAAATTTAAGCCCTTTTCCGAGA 1440
consensus_7379#1 GCACGTGAATGTAATTTACACGTGAAAAAGGG-CCCACAATTTTAAGCCCTTTTCCG--- 950
********************* ********** ******* ****************
consensus_7379#0 TCGGCTTTTCCGG 1453
consensus_7379#1 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||