|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7385#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1101 fasta sequence
[GGCCGACACTTCCATGAACGCGAGAAACTCCTCGTCCAGCTCGTCTCGCTCTTCCTCCTCTCCGGTGGTTTGTTGTCGTTGCGACCGTTGATGTCGCTCTCCGCATCCTTCTGTTGCTGCAAAGAGAATGGGGGAAAAAGGATTGGTTGCATATGCAGACGGAACCCATTCGTCTTGAGAGAAATAAAATTTATTTTATTTCTACCCTTCTCGTCCTCTCTTCTTTTCGCCCATCACGCGTGGTACAGACACGCAAAACACGCAAGT-TGCGGGTGGCCAATGGAAAGGTGCTACAATGACTCGCGCATAACGCAATCCAATTTCAAGCCCCAATTCATCCCATTACACTTCCGTTTGCATTCCCCTGAATAGACTCCTTTCACCAGCTGCTCCCCAAAGGCTTACCGTCCGTGCTTTCATCCTCGGTGTCACCGAACGGATCGTCCTCAGCTTGATAATCCTGCTCGGAATCGCTACTGTCGGCTGCCTCCCTGGCAGTTCTGCCGCCGGCGGCCAGCACGGAACGCTTCAGGCGATCGTTTTCCGCTCTCAGCTGCTGGGCACATTGCTTCCAGTAGTTGGTTTGGTGCTTGGTGTGCCATTTTACCACCCGATGGTACGCCCGGATCCACATGTTCTGGGCATGCTTAAGACGTATATCGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCACACCAGCGGCTGGATGTCGCGGGTCGTAGTGATGCTGTACTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGCGCTTAATCGTGCGGGCATTTTTCTTGCGCTTGCACTTTCGCTTGTTGCGGGAACGAATCGTTTTGTCTCGCGACTTCCCGATGGGTACATTTTTGTACTCTACATCCAACACACGCTTCATGTTGGTTA-CTCAAGTTGCGTTGCTTGTGCAGGTAGGAAGGTTTTTCGATAATTTAATTTAACATTATTAGTTCATACAATTCTATGTTGTTTATTCAAAACTAAAGAAAGTACTTTCACTAAACACACATTTGCTTATTCAAAGCTTCGTCTGATTGTGAGATTGTAAAACACTTTTTTGTGTGTTTCGTTTATGCATCT]
[+] EMBL CNS09N6O [GGCCGACACTTCCATGAACGCGAGAAACTCCTCGTCCAGCTCGTCTCGCTCTTCCTCCTCTCCGGTGGTTTGTTGTCGTTGCGACCGTTGATGTCGCTCTCCGCATCCTTCTGTTGCTGCAAAGAGAATGGGGGAAAAAGGATTGGTTGCATATGCAGACGGAACCCATTCGTCTTGAGAGAAATAAAATTTATTTTATTTCTACCCTTCTCGTCCTCTCTTCTTTTCGCCCATCACGCGTGGTACAGACACGCAAAACACGCAAGT TGCGGGTGGCCAATGGAAAGGTGCTACAATGACTCGCGCATAACGCAATCCAATTTCAAGCCCCAATTCATCCCATTACACTTCCGTTTGCATTCCCCTGAATAGACTCCTTTCACCAGCTGCTCCCCAAAGGCTTACCGTCCGTGCTTTCATCCTCGGTGTCACCGAACGGATCGTCCTCAGCTTGATAATCCTGCTCGGAATCGCTACTGTCGGCTGCCTCCCTGGCAGTTCTGCCGCCGGCGGCCAGCACGGAACGCTTCAGGCGATCGTTTTCCGCTCTCAGCTGCTGGGCACATTGCTTCCAGTAGTTGGTTTGGTGCTTGGTGTGCCATTTTACCACCCGATGGTACGCCCGGATCCACATGTTCTGGGCATGCTTAAGACGTATATCGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCACACCAGCGGCTGGATGTCGCGGGTCGTAGTGATGCTGTACTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGCGCTTAATCGTGCGGGCATTTTTCTTGCGCTTGCACTTTCGCTTGTTGCGGGAACGAATCGTTT ]
[+] EMBL CNS09CD8 [GGCCGACACTTCCATGAACGCGAGAAACTCCTCGTCCAGCTCGTCTCGCTCTTCCTCCTCTCCGGTGGTTTGTTGTCGTTGCGACCGTTGATGTCGCTCTCCGCATCCTTCTGTTGCTGCAAAGAGAATGGGGGAAAAAGGATTGGTTGCATATGCAGACGGAACCCATTCGTCTTGAGAGAAATAAAATTTATTTTATTTCTACCCTTCTCGTCCTCTCTTCTTTTCGCCCATCACGCGTGGTACAGACACGCAAAACACGCAAGT TGCGGGTTGCCAATGGAAAGGTGCTACAATGACTCGCGCATCACGCAATCCAATTTCAAGCCCCAATTCATCCCATTACACTTCCGTTTGCATTCCCCTGAATAGACTCCTTTCACCAGCTGCTCCCCAAAGGCTTACCGTCCGTGCTTTCATCCTCGGTGTCACCGAACGGATCGTCCTCAGCTTGATAATCCTGCTCGGAATCGCTACTGTCGGCTGCCTCCCTGGCAGTTCTGCCGCCGGCGGCCACCACGGAACGCTTCAGGCGATCGTTTTCCGCTCTCAGCTGCTGGGCACATTGCTTCCAGTAGTTGGTTTGGTGCTTGGTGTGCCATTTTACCACCCGATGGTACGCCCGGATCCACATGTTCTGGGCATGCTTAAGACGTATATCGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCACACCAGCGGCTGGATGTCGCGGGTCGTAGTGATGCTGTACTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGCGCTTAATCGTGCGGG ]
[-] EMBL CNS09N6N [ CGCAAAACACGCAAGTGTGCGGGTGGCCAATGGAAAGGTGCTACAATGACTCGCGCATTACGCAATCCAATTTCAAGCCCCAATTCATCCCATTACACTTCCGTTTGCATTCCCCTGAATAGACTCCTTTCACCAGCTGCTCCCCAAAGGCTTACCGTCCGTGCTTTCATCCTCGGTGTCACCGAACGGATCGTCCTCAGCTTGATAATCCTGCTCGGAATCGCTACTGTCGGCTGCCTCCCTGGCAGTGCTGCCGCCGGCGGCCAGCACGGAACGCTTCAGGCGATCGTTTTCCGCTCTCAGCTGCTGGGCACATTGCTTCCAGTAGTTGGTTTGGTGCTTGGTGTGCCATTTTACCACCCGATGGTACGCCCGGATCCACATGTTCTGGGCATGCTTAAGACGTATATCGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCACACCAGCGGCTGGATGTCGCGGGTCGTAGTGATGCTGTACTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGCGCTTAATCGTGCGGGCATTTTTCTTGCGCTTGCACTTTCGCTTGTTGCGGGAACGAATCGTTTTGTCTCGCGACTTCCCGATGGGTACATTTTTGTACTCTACATCCAACACACGCTTCATGTTGGTTATCTCAAGTTGCGTTGCTTGTGCAGGTAGGAAGGTTTTTCGATAATTTAATTTAACATTATTAGTTCATACAATTCTATGTTGTTTATTCAAAACTAAAGAAAGTACTTTCACTAAACACACATTTGCTTATTCAAAGCTTCGTCTGATTGTGAGATTGTAAAACACTTTTTTGTG ]
[-] EMBL CNS09CD7 [ ACCAGCTGCTCCCCAAAGGCTTACCGTCCGTGCTTTCATCCTCGGTGTCACCGAACGGATCGTCCTCAGCTTGATAATCCTGCTCGGAATCGCTACTGTCGGCTGCCTCCCTGGCAGTGCTGCCGCCGGCGGCCAGCACGGAACGCTTCAGGCGATCGTTTTCCGCTCTCAGCTGCTGGGCACATTGCTTCCAGTAGTTGGTTTGGTGCTTGGTGTGCCATTTTACCACCCGATGGTACGCCCGGATCCACATGTTCTGGGCATGCTTAAGACGTATATCGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCACACCAGCGGCAAGATGTCGCGGGTCGTAGTGATGCTGTACTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGCGCTTAATCGTGCGGGCATTTTTCTTGCGCTTGCACTTTCGCTTGTTGCGGGAACGAATCGTTTTGTCTCGCGACTTCCCGACGGGTACATTTTTGTACTCTACATCCAACACACGCTTCATGTTGGTTA CTCAAGTTGCGTTGCTTGTGCAGGTAGGAAGGTTTTTCGATAATTTAATTTAACATTATTAGTTCATACAATTCTATGTTGTTTATTCAAAACTAAAGAAAGTACTTTCACTAAACACACATTTGCTTATTCAAAGCTTCGTCTGATTGTGAGATTGTAAAACACTTTTTTGTGTGTTTCGTTTATGCATCT]
consensusID : consensus_7385#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 787 fasta sequence
[CGAGAAACTCNTCGTCCAGCTCGTCTCGCTCTTCCTCCTCTGCGGTGGTTCGTTGTCGCGACCGTTGATGTCGCTCTCCGCATCCTTCGTCCGTGCTTTCATCCTCGGTGTCACCGAACGGATCGTCCTCAGCTAGATAATCTTGCTCGGAATCGCTACTGTCGGCTGCCTCCCTGGCAGTGCTGCCGCCGGCGGCCAGCACGGAACGCTTCAGGCGATCGTTTTCCGCTCTCAGCTGCTGGGCACATTGCTTCCAGTAGTTGGTTTGGTGCTTGGTGT-GCCATT-TTACCACCCGATGGTACGCTCGGATCCACATGTTCTGGGCATGCTTAAGACGTATATCGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCATAGCAGCGGCTGGATGTCGCGGGTCGTAGTGATGCTGTGCTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGCGCTTAATCGTGCGGGCATTTTTCTTGCGCTTGCACTTTCGCTTGTTGCGGGAACGAATCGTTTTATCACGCGACTTCCCGACGGGCACATTTTTGTACTCTACA-TCCAACACACGCTTCATGTTGGTTACTCAAGTTGCGTTGCTTGTGCAGGTAGGAAGGTTTGTCGATAATTTAATTTAACATCATTAGTTCATACAATTCTATGTTGTTTATTCCAAACTAAAGAAAGTACTATCACGTAAACACACATTTGCTTATTCAAAGCTTCGTCTGATTGTGAGATTGTAAAACACTTTTTTGTGTGTTTCGTCCTCGGGCCGATT]
[-] EMBL BX624396 [CGAGAAACTCNTCGTCCAGCTCGTCTCGCTCTTCCTCCTCTGCGGTGGTTCGTTGTCGCGACCGTTGATGTCGCTCTCCGCATCCTTCGTCCGTGCTTTCATCCTCGGTGTCACCGAACGGATCGTCCTCAGCTAGATAATCTTGCTCGGAATCGCTACTGTCGGCTGCCTCCCTGGCAGTGCTGCCGCCGGCGGCCAGCACGGAACGCTTCAGGCGATCGTTTTCCGCTCTCAGCTGCTGGGCACATTGCTTCCAGTAGTTGGTTTGGTGCTTGGTGT GCCATT TTACCACCCGATGGTACGCTCGGATCCACATGTTCTGGGCATGCTTAAGACGTATATCGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCATAGCAGCGGCTGGATGTCGCGGGTCGTAGTGATGCTGTGCTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGCGCTTAATCGTGCGGGCATTTTTCTTGCGCTTGCACTTTCGCTTGTTGCGGGAACGAATCGTTTTATCACGCGACTTCCCGACGGGCACATTTTTGTACTCTACA TCCAACACACGCTTCATGTTGGTTACTCAAGTTGCGTTGCTTGTGCAGGTAGGAAGGTTTGTCGATAATTTAATTTAACATCATTAGTTCATACAAT ]
[-] EMBL AL934961 [ GCTTCAGGCGATCGTTTTCCGCTCTCAGCTGCTGGGCACATTGCTTCCAGTAGTTGGTTTGGTGCTTGGTGTGGCCATTGTTACCACCCGATGGTACGCTCGGATCCACATGTTCTGGGCATGCTTAAGACGTATATCGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCATAGCAGCGGCTGGATGTCGCGGGTCGTAGTGATGCTGTGCTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGCGCTTAATCGTGCGGGCATTTTTCTTGCGCTTGCACTTTCGCTTGTTGCGGGAACGAATCGTTTTATCACGCGACTTCCCGACGGGCACATTTTTGTACTCTACAGTCCAACACACGCTTCATGTTGGTTACTCAAGTTGCGTTGCTTGTGCAGGTAGGAAGGTTTGTCGATAATTTAATTTAACATCATTAGTTCATACAATTCTATGTTGTTTATTCCAAACTAAAGAAAGTACTATCACGTAAACACACATTTGCTTATTCAAAGCTTCGTCTGATTGTGAGATTGTAAAACACTTTTTTGTGTGTTTCGTCCTCGGGCCGATT]
[-] EMBL BM638784 [ CTTCCAGTAGTTGGTTTGGTGCTTGGTGT GCCATT TTACCACCCGATGGTACGCTCGAATCCACATGTTCTGGGCATGCTTAAGACGTATATCGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCATAGCAGCGGCTGGATGTCGCGGGTCGTAGTGATGCTGTGCTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGCGCTTAATCGTGCGGGCATTTTTCTTGCGCTTGCACTTTCGCTTGTTGCGGGAGCGAATCGTTTTATCACGCGACTTCCCGACGGGCACATTTTTGTACTCTACA TCCAACACACGCTTCATGTTGGTTACTCAAGTTGCGTTGCTTGTGCAGGTAGGAAGGTTTGTCGATAATTTAATTTAACATCATTAGTTCATACAATTCTATGTTGTTTATTCCAAACTAAAGAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7385#0 GGCCGACACTTCCATGAACGCGAGAAACTCCTCGTCCAGCTCGTCTCGCTCTTCCTCCTC 60
consensus_7385#1 ------------------------------------------------------------
consensus_7385#0 TCCGGTGGTTTGTTGTCGTTGCGACCGTTGATGTCGCTCTCCGCATCCTTCTGTTGCTGC 120
consensus_7385#1 ------------------------------------------------------------
consensus_7385#0 AAAGAGAATGGGGGAAAAAGGATTGGTTGCATATGCAGACGGAACCCATTCGTCTTGAGA 180
consensus_7385#1 ------------------------------------------------------------
consensus_7385#0 GAAATAAAATTTATTTTATTTCTACCCTTCTCGTCCTCTCTTCTTTTCGCCCATCACGCG 240
consensus_7385#1 ------------------------------------------------------------
consensus_7385#0 TGGTACAGACACGCAAAACACGCAAGTTGCGGGTGGCCAATGGAAAGGTGCTACAATGAC 300
consensus_7385#1 ------------------------------------------------------------
consensus_7385#0 TCGCGCATAACGCAATCCAATTTCAAGCCCCAATTCATCCCATTACACTTCCGTTTGCAT 360
consensus_7385#1 ------------CGA--GAAACTCNTCGTCCAGCTCGTCTCGCTCTTCCTCCTCTGCGGT 46
* * ** ** *** ** ** * * * *** * *
consensus_7385#0 TCCCCTGAATAGACTCCTTTCACCAGCTGCTCCCCAAAGGCTTACCGTCCGTGCTTTCAT 420
consensus_7385#1 GGTTCGTTGTCGCGACCGTTGAT--GTCGCTCTCCGCATCCTT--CGTCCGTGCTTTCAT 102
* * * ** ** * * **** ** * *** ***************
consensus_7385#0 CCTCGGTGTCACCGAACGGATCGTCCTCAGCTTGATAATCCTGCTCGGAATCGCTACTGT 480
consensus_7385#1 CCTCGGTGTCACCGAACGGATCGTCCTCAGCTAGATAATCTTGCTCGGAATCGCTACTGT 162
******************************** ******* *******************
consensus_7385#0 CGGCTGCCTCCCTGGCAGTTCTGCCGCCGGCGGCCAGCACGGAACGCTTCAGGCGATCGT 540
consensus_7385#1 CGGCTGCCTCCCTGGCAGTGCTGCCGCCGGCGGCCAGCACGGAACGCTTCAGGCGATCGT 222
******************* ****************************************
consensus_7385#0 TTTCCGCTCTCAGCTGCTGGGCACATTGCTTCCAGTAGTTGGTTTGGTGCTTGGTGTGCC 600
consensus_7385#1 TTTCCGCTCTCAGCTGCTGGGCACATTGCTTCCAGTAGTTGGTTTGGTGCTTGGTGTGCC 282
************************************************************
consensus_7385#0 ATTTTACCACCCGATGGTACGCCCGGATCCACATGTTCTGGGCATGCTTAAGACGTATAT 660
consensus_7385#1 ATTTTACCACCCGATGGTACGCTCGGATCCACATGTTCTGGGCATGCTTAAGACGTATAT 342
********************** *************************************
consensus_7385#0 CGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCACACCAGCGGCTGGATGTCGCGGGT 720
consensus_7385#1 CGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCATAGCAGCGGCTGGATGTCGCGGGT 402
************************************ * *********************
consensus_7385#0 CGTAGTGATGCTGTACTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGC 780
consensus_7385#1 CGTAGTGATGCTGTGCTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGC 462
************** *********************************************
consensus_7385#0 GCTTAATCGTGCGGGCATTTTTCTTGCGCTTGCACTTTCGCTTGTTGCGGGAACGAATCG 840
consensus_7385#1 GCTTAATCGTGCGGGCATTTTTCTTGCGCTTGCACTTTCGCTTGTTGCGGGAACGAATCG 522
************************************************************
consensus_7385#0 TTTTGTCTCGCGACTTCCCGATGGGTACATTTTTGTACTCTACATCCAACACACGCTTCA 900
consensus_7385#1 TTTTATCACGCGACTTCCCGACGGGCACATTTTTGTACTCTACATCCAACACACGCTTCA 582
**** ** ************* *** **********************************
consensus_7385#0 TGTTGGTTACTCAAGTTGCGTTGCTTGTGCAGGTAGGAAGGTTTTTCGATAATTTAATTT 960
consensus_7385#1 TGTTGGTTACTCAAGTTGCGTTGCTTGTGCAGGTAGGAAGGTTTGTCGATAATTTAATTT 642
******************************************** ***************
consensus_7385#0 AACATTATTAGTTCATACAATTCTATGTTGTTTATTCAAAACTAAAGAAAGTACTTTCAC 1020
consensus_7385#1 AACATCATTAGTTCATACAATTCTATGTTGTTTATTCCAAACTAAAGAAAGTACTATCAC 702
***** ******************************* ***************** ****
consensus_7385#0 -TAAACACACATTTGCTTATTCAAAGCTTCGTCTGATTGTGAGATTGTAAAACACTTTTT 1079
consensus_7385#1 GTAAACACACATTTGCTTATTCAAAGCTTCGTCTGATTGTGAGATTGTAAAACACTTTTT 762
***********************************************************
consensus_7385#0 TGTGTGTTTCGTTTATGCATCT--- 1101
consensus_7385#1 TGTGTGTTTCGTCCTCGGGCCGATT 787
************ * *
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||