These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7387#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1492 fasta sequence [CCGGGCCGCCCTGCAGCAGGAGCACGTGGAGGCTCTAGCATTGTGTTGGGTGAGTCCACCATTGATAGTAGCTCTTCCAAGCGACAGCAGACAAGCACCACCACCAAGCTGATTGGAGGAAAGCTCGTCCACGTGACAAACGCCAGCGATAGCAATAACAACAGTTCCG--GGCA-AAGCGTC--CCCAGAACGCATCGAATGCTCACCACTCTTCGCTGCAGGAGCAGCTGT-CTCCCAGACCGCGT-CTCCACATCCACAGCCTCGAACGTGATGAAGTCGAGCCGAACGAGTGAATCAAGCACCACCCGCAACACGAGCACGA-TCGGACAGCAGTCC-TCCAC-GTCACAGCAGC-AGCAGCAGCAGCA-GTACAAT-CGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAA-CTCGATCCTCTGCCGACCGGCGCAAACGTCCACCGCCACCACAA-CGCAGCACGCCGCCAATGGGGTGGCCGGTGGCAT-GAGCGTATCCGGC-TCGAT-CCAGCGCAAGAGCATCTCGAACCTGAACGACAGCGCCATGTACTCGACGACGAACCGCACCAGCTACAG-CT-C-GC-TGCACCGCCGCGGCAAGGAATCGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCA-CCAACC-GGACGGTGCGTGGCCAACCGTGTCCA-CCACCGACGCTGGCCGGTACGGGTCTATCGAACAGCAGTAGCACCGTGACCGCGAGCTCCTCCACCAGTATGTCGGCG-GCGAATCAGAAATC-GCTGCGAGACTACCACTCCGCCATGAAC-GTCACGCGCAGCTCGTCGACCAAAGCGAACGCGTCCAACATCTC-GTTC-GGGGAC-GACAAGTTCCAC-GGTACCAGCTCGTACAA-GGTGCAGTACATCCAGCAGCACGAAGGGCGCTGCCCGGCCGCCGCACATGACAACATGAAGCTGTCGAAGGTCACCAAACAGCACACGTACTATGTGC-GGGACA-AGAAGTGCTAGGCGGAGCATCGTTAGAGTTGCAGTGGCATAAATGTTTTGGATTATTTGTTTATTCTAATAATATTGTATCTGTTCTCCAATGCTTCTACATATCGTTTTGGNTGTGATCCAGTGTNACAGTCTGATACACACATGCGTNNAAGCACTTTCAGTGAACATATATACATCGACTCATTATTACANCGAANCGCGTGGAAGGAGCGTTGGTCACGTGCGCANCTCTTCAGAGGAAGACGTAAATCACGGGTCGCANACGGCATAATTAACGGGCTATACCCCATATAATANTACCCTAAGCATCAACTATTTACTACAAAAAANTGGGTCAGTTCATACGCTTAATTGGCTNTNGTCTGTACNTNTACNANAAACGCGAACAACAGTAACTANANAAGACAAAAGAGCANACACAACAGAGGGCNTTTTTGCCGGNNGNGAAGCATTATTCCNTNCGGGCGGGGTNACTCTACTATGGGATGCCCGNCTGANC] [+] EMBL BM575504 [CCGGGCCGCCCTGCAGCAGGAGCACGTGGAGGCTCTAGCATTGTGTTGGGTGAGTCCACCATTGATAGTAGCTCTTCCAAGCGACAGCAGACAAGCACCACCACCAAGCTGATTGGAGGAAAGCTCGTCCACGTGACAAACGCCAGCGATAGCAATAACAACAGTTCCGCCGGCA AAGCGTCTGCCCAGAACGCATCGAATGCTCACCACTCTTCGCTGCAGGAGCAGCTGTCCTCCCAGACCGCGTCCTCCACATCCACAGCCTCGAACGTGATGAAGTCGAGCCGAACGAGTGAATCAAGCACCACCCGCAACACGAGCACGA TCGGACAGCAGTCC TCCAC GTCACAGCAGC AGCAGCAGCAGCA GTACAAT CGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAA CTCGATCCTCTGCCGACCGGCGCAAACGTCCACCGCCACCACAA CGCAGCACGCCGCCAATGGGGTGGCCGGTGGCATGGAGCGTATCCGGC TCGAT CCAGCGCAAGAGCATCTCGAACCTGAACGACAGCGCCATGTACTCGACGACGAACCGCACCAGCTACAG CT C GC TGCACCGCCGCGGCAAGGAATCGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCACCCAACCGGGACGGTGCGTGGCCAACCGTGTCCACCCACCGACGCTtgg ] [+] EMBL BX466598 [ GGCAGAATCGCC ACGAGGNNANATCGAATGCTCACCACTCTTCGCTGCAGGAGCAGCTGT CTCCCAGACCGCGT CTCCACATCCACAGCCTCGAACGTGATGAAGTCGAGCCGAACGAGTGAATCAAGCACCACCCGCAACACGAGCACGAGTCGGACAGCAGTCCGTCCACGGTCACAGCAGCGAGCAGCAGCAGCAGGTACAAT CGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAAGCTCGATCCTCTGCCGACCGGCGCAAACGTCCACCGGCACCACAAGCGCAGCACGCCG CAATGGGGTGGCCGGTGGCAT GAGCGTATCCGGCGTCGATACCAGCGCAAGAGCATCTCGAACCTGAACGACAGCGCCATGTACTCGACGACGAACCGNACCAGCTACAGACTACGGCGTGCACCGCCGCGGCAAGGAAT ] [+] EMBL BX615018 [ AC GTCACAGCAGC AGCAGCAGCAGCA GTACAAT CGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAA CTCGATCCTCTGCCGACCGGCGCAAACGTCCACCGCCACCACAA CGCAGCACGCCGCCAATGGGGTGGCCGGTGGCAT GAGCGTATCCGGC TCGAT CCAGCGCAAGAGCATCTCGAACCTGAACGACAGCGCCATGTACTCGACGACGAACCGCACCAGCTACAG CT C GC TGCACCGCCGCGGCAAGGAATCGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCA CCAACC GGACGGTGCGTGGCCAACCGTGTCCA CCACCGACGCTGGCCGGTACCGGGCTGTCGAACAGCAGTAGCACCGTGACCGCGAGCTCCTCCACCAGCATGTCGGCG GCGAATCAGAAATC GCTGCGCGACTACCACTCCGCCATGAAC GTCACGCGCAGCTCGTCGACCAAAGCGAACGCGTCCAGCATCTC GTTC GGGGAC GACAAGTTCCAC GGCACCAGCTCGTACAA GGTGCAGTACATCCAGCAGCACGAAGGGCGCTGCCCGGCCGCCGCACATGACAACATGAAGCTGTCGAAGGTCACCAAACAGCACACGTACTATGTGC GGGACA AGAAGT ] [+] EMBL AL930450 [ aagattc ccACGATNCGGAAGAACA CTTCGCGTCGTCAGAGAACGTGAACAA CTCGATCCTCTGCCGACCGGCGCAAACGTCCACCGCCACCACAA CGCAGCACGCCGCCAATGGGGTGGCCGGTGGCAT GAGCGTATCCGGC TCGAT CCAGCGCAAGAGCATCTCGAACCTGAACGACAGCGCCATGTACTCGACGACGAACCGCACCAGCTACAG CT C GC TGCACCGCCGCGGCAAGGAATCGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCA CCAACC GGACGGTGCGTGGCCAACCGTGTCCA CCACCGACGCTGGCCGGTACGGGTCTATCGAACAGCAGTAGCACCGTGACCGCGAGCTCCTCCACCAGTATGTCGGCG GCGAATCAGAAATC GCTGCGAGACTACCACTCCGCCATGAAC GTCACGCGCAGCTCGTCGACCAAAGCGAACGCGTCCAACATCTCGGTTC GGGGAC GACAAGTTCCACGGGTACCAGCT ] [+] EMBL AL930443 [ CAA GAATCCCCCGAGGTTAAAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCA CCAACC GGACGGTGCGTNGCCAACCGTGTCCA CCACCGACGCTGGCCGGTACGGGTCTATCGAACAGCAGTAGCACCGTGACCGCGAGCTCCTCCACCAGTATGTCGGCGTGCGAATCAGAAATCTGCTGCGAGACTACCACTCCGCCATGAACTGTCACGCGCAGCTCGTCGACCAAAGCGAACGCGTCCAACATCTC GTTCTGGGGACTGACAAGTTCCAC GGTACCAGCTCGTACAANTGTGCAGTACATCCAGCAGCACGAAGGGCGCTGCCCGGCCGCCGCACACGACAACATGAAGCTGTCGAAGGTCACCAAACAGCACACGTACTATGTGCTGGGACACATNA AGCTAGGCGGAGCATCGTTAGAGTTGCAGTGGCATAAATGTTTTGGATTATTTGTTTATTCTAATAATATTGTATCTGTTCTCCAATGCTTCTACATATCGTTTTGGNTGTGATCCAGTGTNACAGTCTGATACACACATGCGTNNAAGCACTTTCAGTGAACATATATACATCGACTCATTATTACANCGAANCGCGTGGAAGGAGCGTTGGTCACGTGCGCANCTCTTCAGAGGAAGACGTAAATCACGGGTCGCANACGGCATAATTAACGGGCTATACCCCATATAATANTACCCTAAGCATCAACTATTTACTACAAAAAANTGGGTCAGTTCATACGCTTAATTGGCTNTNGTCTGTACNTNTACNANAAACGCGAACAACAGTAACTANANAAGACAAAAGAGCANACACAACAGAGGGCNTTTTTGCCGGNNGNGAAGCATTATTCCNTNCGGGCGGGGTNACTCTACTATGGGATGCCCGNCTGANC] consensusID : consensus_7387#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGAGTGAATCAAGCACCACCCGCAACACGAGCACGATCGGACAGCAGTCCTCCACGTCACAGCAGCAGCAGCAGCAGCAGTACAATCGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAACTCGATCCTCTGCCGACCGGCGCAAACGTCCACCGCCACCACAACGCAGCACGCCGCCAATGGGGTGGCCGGTGGCATGAGCGTATCCGGCTCGATCCAGCGCAAGAGCATCTCGAACCTGAACGACAGCGCCATGTACTCGACGACGAACCGCACCAGCTACAGCTCGCTGCACCGCCGCGGCAAGGAATCGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCACCAACCGGACGGTGCGTGGCCAACCGTGTCCACCACCGACGCTGGCCGGTACGGGTCTATCGAACAGCAGTAGCACCGTGACCGCGAGCTCCTCCACCAGTATGTCGGCGGCGAATCAGAAATCGCTGCGAGACTACCACTCCGCCATGAACGTCACGCGCAGCTCGTCGACCAAAGCGAACGCGTCCAACATCTCGTTCGGGGACAACAAGTTCCACGGTACCAGCTCGTACAAGGTGCAGTACATCCACCAGCACGAAGGGCGCTGCCCGGCTCGC] [+] EMBL BM589389 [CCGCCCACGCGTCCGCCCACGCGTCCGGAGTGAATCAAGCACCACCCGCAACACGAGCACGATCGGACAGCAGTCCTCCACGTCACAGCAGCAGCAGCAGCAGCAGTACAATCGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAACTCGATCCTCTGCCGACCGGCGCAAACGTCCACCGCCACCACAACGCAGCACGCCGCCAATGGGGTGGCCGGTGGCATGAGCGTATCCGGCTCGATCCAGCGCAAGAGCATCTCGAACCTGAACGACAGCGCCATGTACTCGACGACGAACCGCACCAGCTACAGCTCGCTGCACCGCCGCGGCAAGGAATCGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCACCAACCGGACGGTGCGTGGCCAACCGTGTCCACCACCGACGCTGGCCGGTACGGGTCTATCGAACAGCAGTAGCACCGTGACCGCGAGCTCCTCCACCAGTATGTCGGCGGCGAATCAGAAATCGCTGCGAGACTACCACTCCGCCATGAACGTCACGCGCAGCTCGTCGACCAAAGCGAACGCGTCCAACATCTCGTTCGGGGACAACAAGTTCCACGGTACCAGCTCGTACAAGGTGCAGTACATCCACCAGCACGAAGGGCGCTGCCCGGCTCGC] consensusID : consensus_7387#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence [AATTGCCCCGAGGNTTACACCCGCAACACGAGCACGATCGGACAGCAGTCCTCCACGTCACAGCAGCAGCAGCAGCAGCAGTACAATCGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAACTCGATCCTCTGCCGACCGGCGCAAACGTCCACCGCCACCACAACGCAGCACGCCGCCAATGGGGTGGGCGGTGGCATGAGCGTATCCGGCTCGATCCAGCGCAAGAGCATCTCGAACCTGAACGACAGCGCCATGTACTCGACGACGAACCGCACCAGCTACAGCTCGCTGCACCGCCGCGGCAAGGAATCGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCACCAACCGGACGGTGCGTGGCCAACCGTGTCACCACCGACGCTGGCCGGTACGGGTCTATCGAACAGCAGTAGCACCGTGACCGCGAGC] [+] EMBL AL693437 [AATTGCCCCGAGGNTTACACCCGCAACACGAGCACGATCGGACAGCAGTCCTCCACGTCACAGCAGCAGCAGCAGCAGCAGTACAATCGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAACTCGATCCTCTGCCGACCGGCGCAAACGTCCACCGCCACCACAACGCAGCACGCCGCCAATGGGGTGGGCGGTGGCATGAGCGTATCCGGCTCGATCCAGCGCAAGAGCATCTCGAACCTGAACGACAGCGCCATGTACTCGACGACGAACCGCACCAGCTACAGCTCGCTGCACCGCCGCGGCAAGGAATCGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCACCAACCGGACGGTGCGTGGCCAACCGTGTCACCACCGACGCTGGCCGGTACGGGTCTATCGAACAGCAGTAGCACCGTGACCGCGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7387#1 ------------------------------------------------------------ consensus_7387#2 ------------------------------------------------------------ consensus_7387#0 CCGGGCCGCCCTGCAGCAGGAGCACGTGGAGGCTCTAGCATTGTGTTGGGTGAGTCCACC 60 consensus_7387#1 ------------------------------------------------------------ consensus_7387#2 ------------------------------------------------------------ consensus_7387#0 ATTGATAGTAGCTCTTCCAAGCGACAGCAGACAAGCACCACCACCAAGCTGATTGGAGGA 120 consensus_7387#1 ------------------------------------------------------------ consensus_7387#2 ------------------------------------------------------------ consensus_7387#0 AAGCTCGTCCACGTGACAAACGCCAGCGATAGCAATAACAACAGTTCCGGGCAAAGCGTC 180 consensus_7387#1 ------------------------------------------------------------ consensus_7387#2 ------------------------------------------------------------ consensus_7387#0 CCCAGAACGCATCGAATGCTCACCACTCTTCGCTGCAGGAGCAGCTGTCTCCCAGACCGC 240 consensus_7387#1 ----------------CCGCCCACGCG-TCCGCCCACGCGTCCGGAGTGAATCAAGCAC- 42 consensus_7387#2 --------------------------------------------AATTGCCCCGAGGNTT 16 consensus_7387#0 GTCTCCACATCCACAGCCTCGAACGTGATGAAGTCGAGCCGAACGAGTGAATCAAGCAC- 299 * ** * ** consensus_7387#1 -CACCCGCAACACGAGCACGATCGGACAGCAGTCCTCCACGTCACAGCAGCAGCAGCAGC 101 consensus_7387#2 ACACCCGCAACACGAGCACGATCGGACAGCAGTCCTCCACGTCACAGCAGCAGCAGCAGC 76 consensus_7387#0 -CACCCGCAACACGAGCACGATCGGACAGCAGTCCTCCACGTCACAGCAGCAGCAGCAGC 358 *********************************************************** consensus_7387#1 AGCAGTACAATCGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAACTCGATCCTCT 161 consensus_7387#2 AGCAGTACAATCGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAACTCGATCCTCT 136 consensus_7387#0 AGCAGTACAATCGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAACTCGATCCTCT 418 ************************************************************ consensus_7387#1 GCCGACCGGCGCAAACGTCCACCGCCACCACAACGCAGCACGCCGCCAATGGGGTGGCCG 221 consensus_7387#2 GCCGACCGGCGCAAACGTCCACCGCCACCACAACGCAGCACGCCGCCAATGGGGTGGGCG 196 consensus_7387#0 GCCGACCGGCGCAAACGTCCACCGCCACCACAACGCAGCACGCCGCCAATGGGGTGGCCG 478 ********************************************************* ** consensus_7387#1 GTGGCATGAGCGTATCCGGCTCGATCCAGCGCAAGAGCATCTCGAACCTGAACGACAGCG 281 consensus_7387#2 GTGGCATGAGCGTATCCGGCTCGATCCAGCGCAAGAGCATCTCGAACCTGAACGACAGCG 256 consensus_7387#0 GTGGCATGAGCGTATCCGGCTCGATCCAGCGCAAGAGCATCTCGAACCTGAACGACAGCG 538 ************************************************************ consensus_7387#1 CCATGTACTCGACGACGAACCGCACCAGCTACAGCTCGCTGCACCGCCGCGGCAAGGAAT 341 consensus_7387#2 CCATGTACTCGACGACGAACCGCACCAGCTACAGCTCGCTGCACCGCCGCGGCAAGGAAT 316 consensus_7387#0 CCATGTACTCGACGACGAACCGCACCAGCTACAGCTCGCTGCACCGCCGCGGCAAGGAAT 598 ************************************************************ consensus_7387#1 CGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCACCAACC 401 consensus_7387#2 CGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCACCAACC 376 consensus_7387#0 CGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCACCAACC 658 ************************************************************ consensus_7387#1 GGACGGTGCGTGGCCAACCGTGTCCACCACCGACGCTGGCCGGTACGGGTCTATCGAACA 461 consensus_7387#2 GGACGGTGCGTGGCCAACCGTGTC-ACCACCGACGCTGGCCGGTACGGGTCTATCGAACA 435 consensus_7387#0 GGACGGTGCGTGGCCAACCGTGTCCACCACCGACGCTGGCCGGTACGGGTCTATCGAACA 718 ************************ *********************************** consensus_7387#1 GCAGTAGCACCGTGACCGCGAGCTCCTCCACCAGTATGTCGGCGGCGAATCAGAAATCGC 521 consensus_7387#2 GCAGTAGCACCGTGACCGCGAGC------------------------------------- 458 consensus_7387#0 GCAGTAGCACCGTGACCGCGAGCTCCTCCACCAGTATGTCGGCGGCGAATCAGAAATCGC 778 *********************** consensus_7387#1 TGCGAGACTACCACTCCGCCATGAACGTCACGCGCAGCTCGTCGACCAAAGCGAACGCGT 581 consensus_7387#2 ------------------------------------------------------------ consensus_7387#0 TGCGAGACTACCACTCCGCCATGAACGTCACGCGCAGCTCGTCGACCAAAGCGAACGCGT 838 consensus_7387#1 CCAACATCTCGTTCGGGGACAACAAGTTCCACGGTACCAGCTCGTACAAGGTGCAGTACA 641 consensus_7387#2 ------------------------------------------------------------ consensus_7387#0 CCAACATCTCGTTCGGGGACGACAAGTTCCACGGTACCAGCTCGTACAAGGTGCAGTACA 898 consensus_7387#1 TCCACCAGCACGAAGGGCGCTGCCCGGCTCGC---------------------------- 673 consensus_7387#2 ------------------------------------------------------------ consensus_7387#0 TCCAGCAGCACGAAGGGCGCTGCCCGGCCGCCGCACATGACAACATGAAGCTGTCGAAGG 958 consensus_7387#1 ------------------------------------------------------------ consensus_7387#2 ------------------------------------------------------------ consensus_7387#0 TCACCAAACAGCACACGTACTATGTGCGGGACAAGAAGTGCTAGGCGGAGCATCGTTAGA 1018 consensus_7387#1 ------------------------------------------------------------ consensus_7387#2 ------------------------------------------------------------ consensus_7387#0 GTTGCAGTGGCATAAATGTTTTGGATTATTTGTTTATTCTAATAATATTGTATCTGTTCT 1078 consensus_7387#1 ------------------------------------------------------------ consensus_7387#2 ------------------------------------------------------------ consensus_7387#0 CCAATGCTTCTACATATCGTTTTGGNTGTGATCCAGTGTNACAGTCTGATACACACATGC 1138 consensus_7387#1 ------------------------------------------------------------ consensus_7387#2 ------------------------------------------------------------ consensus_7387#0 GTNNAAGCACTTTCAGTGAACATATATACATCGACTCATTATTACANCGAANCGCGTGGA 1198 consensus_7387#1 ------------------------------------------------------------ consensus_7387#2 ------------------------------------------------------------ consensus_7387#0 AGGAGCGTTGGTCACGTGCGCANCTCTTCAGAGGAAGACGTAAATCACGGGTCGCANACG 1258 consensus_7387#1 ------------------------------------------------------------ consensus_7387#2 ------------------------------------------------------------ consensus_7387#0 GCATAATTAACGGGCTATACCCCATATAATANTACCCTAAGCATCAACTATTTACTACAA 1318 consensus_7387#1 ------------------------------------------------------------ consensus_7387#2 ------------------------------------------------------------ consensus_7387#0 AAAANTGGGTCAGTTCATACGCTTAATTGGCTNTNGTCTGTACNTNTACNANAAACGCGA 1378 consensus_7387#1 ------------------------------------------------------------ consensus_7387#2 ------------------------------------------------------------ consensus_7387#0 ACAACAGTAACTANANAAGACAAAAGAGCANACACAACAGAGGGCNTTTTTGCCGGNNGN 1438 consensus_7387#1 ------------------------------------------------------ consensus_7387#2 ------------------------------------------------------ consensus_7387#0 GAAGCATTATTCCNTNCGGGCGGGGTNACTCTACTATGGGATGCCCGNCTGANC 1492 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||