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Anopheles gambiae
cluster # 7390 cluster # 7390       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7390#0 length = 880 sequences # 5  
consensus_7390#1 length = 715 sequences # 2  

consensusID : consensus_7390#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 880
fasta sequence
                              [AGATCNCCACGAGGTGNACATTTAAACGTTCGGCGGTTTGTTTACTGTTTCTAATTTTGTCCCGCCCTACCCCACAGACGGCAGTGGGTGTGAGGTGGTTGTGAGCAAAAAAGGAAAAAAAA--CAAAAAAAGCTGCAAGCT-CTAGGCCCCAGCTGTCCTCGTTTTAATTTCGGTCTCGGCCCAGCGCACACGCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCCGTGAAGGAGCTGATCGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGCGGCGCTACGCACCACCACGGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGAACGGCCGTTTGCAAAGCGATTAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGCCCCCT-GCGGTACCTGCCGT-CA-GA-CACTGGCGGAATTCA-GCGCCAAAGATATCCC-CATCTATCTAGTCAA-GCCTGCGCCGGTAAGGGTCATGATAACGTCGCTGTTCAAACTGCTGCCACACGCCTTTTCGCCCACCTTCCTGAACAACAAGTAAAGAAAAGAGAAGAAAACGTTTGGGGGCGCAACCCGGGGACGCACAAAACTTGTAACTTAAACTTAACGACGTTGTTGTG-CCCCCCTTCCCACGTTATCTGCACCATCAGGAAGCTATCTTATCCGATCCCGACCTCCACCCACCGCCTATTTTTTTCGCGTATAAAAATACACACATG]

[+] EMBL BX466553             [AGATCNCCACGAGGTGNACATTTAAACGTTCGGCGGTTTGTTTACTGTTTCTAATTTTGTCCCGCCCTACCCCACAGACGGCAGTGGATGTGAGGTGGTTGTGAGCAAAAAAGGAAAAAAAA  CAAAAAAAGCTGCAAGCT CTAGGCCCCAGCTGTCCTCGTTTTAATTTCGG CTCGGCCCAGCGCACACGCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCCGTGAAGGAGCTGATTGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGCGGCGCTACGCACCACCACAGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGGACGGCCGTTTGTAAAGCGATCAGCGAAGGACATCGGGAGTTTACCGGCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGGCCCCTGGCGGTACCTGCCGTGCAGGAGCACTGGCGGAATTCAGGCGCCAAAGATATCCCGCATCTATCTAGTCAANGCCTGNGCCAGTAAGGGTCATGATAACGTCngc                                                                                                                                                                                                                                       ]
[+] EMBL BX605233             [                    TTTAAACGTTCGGCGGTTTGTTTACTGTTTCTAATTTTGTCCCGCCCTACCCCACAGACGGCAGTGGGTGTGAGGTGGTTGTGAGCAAAAAAGGAAAAAAAA  GAAAAAAAGCTGCAAGCT CTAGGCCCCAGCTGTCCTCGTTTTAATTTCGGTCTCGGCCCAGCGCACACGCACCAGCACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCCGTGAAGGAGCTGATCGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGCGGCGCTACGCACCACCACGGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGAACGGCCGTTTGCAAAGCGATTAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGCCCCCT GCGGTACCTGCCGT CA GA CACTGGCGGAATTCA GCGCCAAAGATATCCC CATCTATCTAGTCAA GCCTGCGCCGGTAAGGGTCATGATAACGTCGCTGTTCAAACTGCTGCCACACGCCTTTTCGCCCACCTTCCTGAACAACAAGTAAAGAAAAGAGAAGAAAACGTTTGGGGGCGCAACCCGGGGACGCACAAAACTTGTAACTTAAACTTAACGACGTTGTTGTG CCCCCCTTCCCACGTTATCTGCA                                                                            ]
[+] EMBL BX627018             [                                           ACTGTTTCTAATTTTGTCCCGCCCTACCCCACAGACGGCAGTGGGTGTGAGGTGGTTGTGAGCAAAAAAGGAAAAAAAAACCAAAAAAAGCTGCAAGCT CTAGGCCCCAGCTGTCCTCGTTTTAATTTCGGTCTCGGCCCAGCGCACACGCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCCGAGAAGGAGCTGATCGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGCGGCGCTACGCACCACCACGGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGGACGGCCGTTTGCAAAGCGATTAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGCCCCCT GCGGTACCTGCCGT CA GA CACTGGCGGAATTCA GCGCCAAAGATATCCC CATCTATCTAGTCAA GCCTGCGCCGGTAAGGGTCATGATAACGTCGCTGNTCAAAC                                                                                                                                                                                                                               ]
[+] EMBL CNS08LQG             [                                                                                                                                      TGCAA CTGCTAGGCCCCAGCTGTCCTCGTTTTAATTTCGGTCTCGGCCCAGCGCACACGCACCAGCACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCCGTGAAGGAGCTGATCGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGCGGCGCTACGCACCACCACGGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCCCGTTCGGGCCGTCCGTGTGCGCCGAGCGAACGGCCGTTTGCAAAGCGATTAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGCCCCCT GCGGTACCTGCCGT CA GA CACTGGCGGAATTCA GCGCCAAAGATATCCC CATCTATCTAGTCAA GCCTGCGCCGGTAAGGGAAAAAATAACGTCGCTGTTCAAACTGCTGCCACACGCCTTTTCGCCCACCTTCCTGAACACCAcg                                                                                                                                                                                      ]
[-] EMBL CNS08LQH             [                                                                                                                                                                                                                                                                                                                                        TTCAGGTGCGCAAAAATGCCTACTGCCCGGACAGCAAATTTCCCGTCGGGGCGGC CAACGCACCACAACGGGCGAGATCTTTTTTTGCTGCAACGTGGAAAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGAACGGCCGTTTGCAAAGCGATTAGCGAAGGACATCGGGAGTTTACCGCCGTCGTTGTGGCGGCTTTTCAGGAGAATGAATTTACGG CCCCT GCGGTCCCTGCCGT CA GA AACTGGCGGAATTCA GCGCCAAAGATATCCC CATCTGCCTAGTCAA GCCTGCGCCGGTAAGGGTCATGATAACGTCGCTGTTCAAACTGCTGCTACACGCCTTTTCGCCCACCTTCCTGAACAACAAGTAAAGAAAAGAGAAGAAAACGTTTGGGGGCGCAACCCGGGGACGCACAAAACTTGTAACTTAAACTTAACGACGTTGTTGTGCCCCCCCTTCCCACGTTTTCTGCACCATCAGGAAGCTATCTTATCCGATCCCGACCTCCACCCACCGCCTATTTTTTTCGCGTATAAAAATACACACATG]


>consensus_7390#0 AGATCNCCACGAGGTGNACATTTAAACGTTCGGCGGTTTGTTTACTGTTTCTAATTTTGT CCCGCCCTACCCCACAGACGGCAGTGGGTGTGAGGTGGTTGTGAGCAAAAAAGGAAAAAA AACAAAAAAAGCTGCAAGCTCTAGGCCCCAGCTGTCCTCGTTTTAATTTCGGTCTCGGCC CAGCGCACACGCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAAC AACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCC GTGAAGGAGCTGATCGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGC AACTTTCCCGTCGGGGCGGCGCTACGCACCACCACGGGCGAGATCGTGACCGGCTGCAAC GTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGAACGGCCGTTTGCAAAGCG ATTAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAA TTTACGGCCCCCTGCGGTACCTGCCGTCAGACACTGGCGGAATTCAGCGCCAAAGATATC CCCATCTATCTAGTCAAGCCTGCGCCGGTAAGGGTCATGATAACGTCGCTGTTCAAACTG CTGCCACACGCCTTTTCGCCCACCTTCCTGAACAACAAGTAAAGAAAAGAGAAGAAAACG TTTGGGGGCGCAACCCGGGGACGCACAAAACTTGTAACTTAAACTTAACGACGTTGTTGT GCCCCCCTTCCCACGTTATCTGCACCATCAGGAAGCTATCTTATCCGATCCCGACCTCCA CCCACCGCCTATTTTTTTCGCGTATAAAAATACACACATG



consensusID : consensus_7390#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 715
fasta sequence
                              [ATCGGCACGAGGGTTCTAATTTTGTCCCGCCCTACCCCACAGACGGCAGTGGATGT-GAGGT-GGTT-GTGAGCAAAAAAGGAAAAAAAACAAAAAAAGCTGCAAGCTCTAGGCCCCAGCTGTCCTCG-TTTTAATTTCGGTCTCGGCCCAGCGCACAC-GCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATA-GTTCCGTGAAGGAGCTGATTGAGGCGGCTATTCAGGTGC-GCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGC-GGCGCTACGCACCACCACAGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGGACGGCCGTTTGTAAAGCGATCAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGGCCCCTGCGGTACCTGCCGTCAGACACTGGCGGAATTCAGCGCCAAAGATATCCCCATCGTANTCTAGTCAAGCCTGCGCCAGTCAGGGTCAGTGATAACGTCGGCGTGTTTCAAACTGCTGCACACGGCNTTTTGCGGCCACCTTCTGAACAACAAGTAAGAANAGAGAGGAAACGTNTGGGGGCGCAACCCGGGGACGCAA]

[+] EMBL BX469628             [ATCGGCACGAGGGTTCTAATTTTGTCCCGCCCTACCCCACAGACGGCAGTGGATGT GAGGT GGTT GTGAGCAAAAAAGGAAAAAAAACAAAAAAAGCTGCAAGCTCTAGGCCCCAGCTGTCCTCG TTTTAATTTCGGTCTCGGCCCAGCGCACAC GCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATA GTTCCGTGAAGGAGCTGATTGAGGCGGCTATTCAGGTGC GCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGC GGCGCTACGCACCACCACAGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGGACGGCCGTTTGTAAAGCGATCAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGGCCCCTGCGGTACCTGCCGTCAGACACTGGCGGAATTCAGCGCCAAAGATATCCCCATCGTANTCTAGTCAAGCCTGCGCCAGTCAGGGTCAGTGATAACGTCGGCGTGTTTCAAACTGCTGCACACGGCNTTTTGCGGCCACCTTCTGAACAACAAGTAAGAANAGAGAGGAAACGTNTGGGGGCGCAACCCGGGGACGCAA]
[+] EMBL AL693447             [                                                     TGTAGGGGTGGGTTGGTGAGCAAAAAAGGAAAAAAAACAAAAAAAGCTGC AGCTCTAGGCCCCAGCTGTCCTCGATTTTAATTTCGGTCTCGGCCCAGCGCACACTGCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATATGTTCCGTGAAGGAGCTGATTGAGGCGGCTATTCAGGTGCTGCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGCTGGCGCTACGCACCACCAC                                                                                                                                                                                                                                                                                                                                                                   ]


>consensus_7390#1 ATCGGCACGAGGGTTCTAATTTTGTCCCGCCCTACCCCACAGACGGCAGTGGATGTGAGG TGGTTGTGAGCAAAAAAGGAAAAAAAACAAAAAAAGCTGCAAGCTCTAGGCCCCAGCTGT CCTCGTTTTAATTTCGGTCTCGGCCCAGCGCACACGCACCAACACGCCAAACGGGAGAGG AGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGT CGAATATTCTACCGTAGATAGTTCCGTGAAGGAGCTGATTGAGGCGGCTATTCAGGTGCG CAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGCGGCGCTACGCACCACCAC AGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGC CGAGCGGACGGCCGTTTGTAAAGCGATCAGCGAAGGACATCGGGAGTTTACCGCCGTCGC TGTGGCGGCTTATCAGGAGAATGAATTTACGGGCCCCTGCGGTACCTGCCGTCAGACACT GGCGGAATTCAGCGCCAAAGATATCCCCATCGTANTCTAGTCAAGCCTGCGCCAGTCAGG GTCAGTGATAACGTCGGCGTGTTTCAAACTGCTGCACACGGCNTTTTGCGGCCACCTTCT GAACAACAAGTAAGAANAGAGAGGAAACGTNTGGGGGCGCAACCCGGGGACGCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7390#0      AGATCNCCACGAGGTGNACATTTAAACGTTCGGCGGTTTGTTTACTGTTTCTAATTTTGT 60
consensus_7390#1      -----------------------------------ATCGGCACGAGGGTTCTAATTTTGT 25
                                                          *  *      * ************

consensus_7390#0      CCCGCCCTACCCCACAGACGGCAGTGGGTGTGAGGTGGTTGTGAGCAAAAAAGGAAAAAA 120
consensus_7390#1      CCCGCCCTACCCCACAGACGGCAGTGGATGTGAGGTGGTTGTGAGCAAAAAAGGAAAAAA 85
                      *************************** ********************************

consensus_7390#0      AACAAAAAAAGCTGCAAGCTCTAGGCCCCAGCTGTCCTCGTTTTAATTTCGGTCTCGGCC 180
consensus_7390#1      AACAAAAAAAGCTGCAAGCTCTAGGCCCCAGCTGTCCTCGTTTTAATTTCGGTCTCGGCC 145
                      ************************************************************

consensus_7390#0      CAGCGCACACGCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAAC 240
consensus_7390#1      CAGCGCACACGCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAAC 205
                      ************************************************************

consensus_7390#0      AACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCC 300
consensus_7390#1      AACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCC 265
                      ************************************************************

consensus_7390#0      GTGAAGGAGCTGATCGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGC 360
consensus_7390#1      GTGAAGGAGCTGATTGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGC 325
                      ************** *********************************************

consensus_7390#0      AACTTTCCCGTCGGGGCGGCGCTACGCACCACCACGGGCGAGATCGTGACCGGCTGCAAC 420
consensus_7390#1      AACTTTCCCGTCGGGGCGGCGCTACGCACCACCACAGGCGAGATCGTGACCGGCTGCAAC 385
                      *********************************** ************************

consensus_7390#0      GTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGAACGGCCGTTTGCAAAGCG 480
consensus_7390#1      GTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGGACGGCCGTTTGTAAAGCG 445
                      ***************************************** *********** ******

consensus_7390#0      ATTAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAA 540
consensus_7390#1      ATCAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAA 505
                      ** *********************************************************

consensus_7390#0      TTTACGGCCCCCTGCGGTACCTGCCGTCAGACACTGGCGGAATTCAGCGCCAAAGATATC 600
consensus_7390#1      TTTACGGGCCCCTGCGGTACCTGCCGTCAGACACTGGCGGAATTCAGCGCCAAAGATATC 565
                      ******* ****************************************************

consensus_7390#0      CCCATCT--ATCTAGTCAAGCCTGCGCCGGTAAGGGTCA-TGATAACGTCGCTGT---TC 654
consensus_7390#1      CCCATCGTANTCTAGTCAAGCCTGCGCCAGTCAGGGTCAGTGATAACGTCGGCGTGTTTC 625
                      ******    ****************** ** ******* ***********  **   **

consensus_7390#0      AAACTGCTGCCACACGCCTTTTCGC--CCACCTTCCTGAACAACAAGTAAAGAAAAGAGA 712
consensus_7390#1      AAACTGCTGC-ACACGGCNTTTTGCGGCCACCTTC-TGAACAACAAGTAA-GAANAGAGA 682
                      ********** ***** * *** **  ******** ************** *** *****

consensus_7390#0      AGAAAACGTTTGGGGGCGCAACCCGGGGACGCACAAAACTTGTAACTTAAACTTAACGAC 772
consensus_7390#1      GGAAA-CGTNTGGGGGCGCAACCCGGGGACGCAA-------------------------- 715
                       **** *** ***********************                           

consensus_7390#0      GTTGTTGTGCCCCCCTTCCCACGTTATCTGCACCATCAGGAAGCTATCTTATCCGATCCC 832
consensus_7390#1      ------------------------------------------------------------
                                                                                  

consensus_7390#0      GACCTCCACCCACCGCCTATTTTTTTCGCGTATAAAAATACACACATG 880
consensus_7390#1      ------------------------------------------------
                                                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)