These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7390#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 880 fasta sequence [AGATCNCCACGAGGTGNACATTTAAACGTTCGGCGGTTTGTTTACTGTTTCTAATTTTGTCCCGCCCTACCCCACAGACGGCAGTGGGTGTGAGGTGGTTGTGAGCAAAAAAGGAAAAAAAA--CAAAAAAAGCTGCAAGCT-CTAGGCCCCAGCTGTCCTCGTTTTAATTTCGGTCTCGGCCCAGCGCACACGCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCCGTGAAGGAGCTGATCGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGCGGCGCTACGCACCACCACGGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGAACGGCCGTTTGCAAAGCGATTAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGCCCCCT-GCGGTACCTGCCGT-CA-GA-CACTGGCGGAATTCA-GCGCCAAAGATATCCC-CATCTATCTAGTCAA-GCCTGCGCCGGTAAGGGTCATGATAACGTCGCTGTTCAAACTGCTGCCACACGCCTTTTCGCCCACCTTCCTGAACAACAAGTAAAGAAAAGAGAAGAAAACGTTTGGGGGCGCAACCCGGGGACGCACAAAACTTGTAACTTAAACTTAACGACGTTGTTGTG-CCCCCCTTCCCACGTTATCTGCACCATCAGGAAGCTATCTTATCCGATCCCGACCTCCACCCACCGCCTATTTTTTTCGCGTATAAAAATACACACATG] [+] EMBL BX466553 [AGATCNCCACGAGGTGNACATTTAAACGTTCGGCGGTTTGTTTACTGTTTCTAATTTTGTCCCGCCCTACCCCACAGACGGCAGTGGATGTGAGGTGGTTGTGAGCAAAAAAGGAAAAAAAA CAAAAAAAGCTGCAAGCT CTAGGCCCCAGCTGTCCTCGTTTTAATTTCGG CTCGGCCCAGCGCACACGCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCCGTGAAGGAGCTGATTGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGCGGCGCTACGCACCACCACAGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGGACGGCCGTTTGTAAAGCGATCAGCGAAGGACATCGGGAGTTTACCGGCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGGCCCCTGGCGGTACCTGCCGTGCAGGAGCACTGGCGGAATTCAGGCGCCAAAGATATCCCGCATCTATCTAGTCAANGCCTGNGCCAGTAAGGGTCATGATAACGTCngc ] [+] EMBL BX605233 [ TTTAAACGTTCGGCGGTTTGTTTACTGTTTCTAATTTTGTCCCGCCCTACCCCACAGACGGCAGTGGGTGTGAGGTGGTTGTGAGCAAAAAAGGAAAAAAAA GAAAAAAAGCTGCAAGCT CTAGGCCCCAGCTGTCCTCGTTTTAATTTCGGTCTCGGCCCAGCGCACACGCACCAGCACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCCGTGAAGGAGCTGATCGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGCGGCGCTACGCACCACCACGGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGAACGGCCGTTTGCAAAGCGATTAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGCCCCCT GCGGTACCTGCCGT CA GA CACTGGCGGAATTCA GCGCCAAAGATATCCC CATCTATCTAGTCAA GCCTGCGCCGGTAAGGGTCATGATAACGTCGCTGTTCAAACTGCTGCCACACGCCTTTTCGCCCACCTTCCTGAACAACAAGTAAAGAAAAGAGAAGAAAACGTTTGGGGGCGCAACCCGGGGACGCACAAAACTTGTAACTTAAACTTAACGACGTTGTTGTG CCCCCCTTCCCACGTTATCTGCA ] [+] EMBL BX627018 [ ACTGTTTCTAATTTTGTCCCGCCCTACCCCACAGACGGCAGTGGGTGTGAGGTGGTTGTGAGCAAAAAAGGAAAAAAAAACCAAAAAAAGCTGCAAGCT CTAGGCCCCAGCTGTCCTCGTTTTAATTTCGGTCTCGGCCCAGCGCACACGCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCCGAGAAGGAGCTGATCGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGCGGCGCTACGCACCACCACGGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGGACGGCCGTTTGCAAAGCGATTAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGCCCCCT GCGGTACCTGCCGT CA GA CACTGGCGGAATTCA GCGCCAAAGATATCCC CATCTATCTAGTCAA GCCTGCGCCGGTAAGGGTCATGATAACGTCGCTGNTCAAAC ] [+] EMBL CNS08LQG [ TGCAA CTGCTAGGCCCCAGCTGTCCTCGTTTTAATTTCGGTCTCGGCCCAGCGCACACGCACCAGCACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCCGTGAAGGAGCTGATCGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGCGGCGCTACGCACCACCACGGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCCCGTTCGGGCCGTCCGTGTGCGCCGAGCGAACGGCCGTTTGCAAAGCGATTAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGCCCCCT GCGGTACCTGCCGT CA GA CACTGGCGGAATTCA GCGCCAAAGATATCCC CATCTATCTAGTCAA GCCTGCGCCGGTAAGGGAAAAAATAACGTCGCTGTTCAAACTGCTGCCACACGCCTTTTCGCCCACCTTCCTGAACACCAcg ] [-] EMBL CNS08LQH [ TTCAGGTGCGCAAAAATGCCTACTGCCCGGACAGCAAATTTCCCGTCGGGGCGGC CAACGCACCACAACGGGCGAGATCTTTTTTTGCTGCAACGTGGAAAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGAACGGCCGTTTGCAAAGCGATTAGCGAAGGACATCGGGAGTTTACCGCCGTCGTTGTGGCGGCTTTTCAGGAGAATGAATTTACGG CCCCT GCGGTCCCTGCCGT CA GA AACTGGCGGAATTCA GCGCCAAAGATATCCC CATCTGCCTAGTCAA GCCTGCGCCGGTAAGGGTCATGATAACGTCGCTGTTCAAACTGCTGCTACACGCCTTTTCGCCCACCTTCCTGAACAACAAGTAAAGAAAAGAGAAGAAAACGTTTGGGGGCGCAACCCGGGGACGCACAAAACTTGTAACTTAAACTTAACGACGTTGTTGTGCCCCCCCTTCCCACGTTTTCTGCACCATCAGGAAGCTATCTTATCCGATCCCGACCTCCACCCACCGCCTATTTTTTTCGCGTATAAAAATACACACATG] consensusID : consensus_7390#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 715 fasta sequence [ATCGGCACGAGGGTTCTAATTTTGTCCCGCCCTACCCCACAGACGGCAGTGGATGT-GAGGT-GGTT-GTGAGCAAAAAAGGAAAAAAAACAAAAAAAGCTGCAAGCTCTAGGCCCCAGCTGTCCTCG-TTTTAATTTCGGTCTCGGCCCAGCGCACAC-GCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATA-GTTCCGTGAAGGAGCTGATTGAGGCGGCTATTCAGGTGC-GCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGC-GGCGCTACGCACCACCACAGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGGACGGCCGTTTGTAAAGCGATCAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGGCCCCTGCGGTACCTGCCGTCAGACACTGGCGGAATTCAGCGCCAAAGATATCCCCATCGTANTCTAGTCAAGCCTGCGCCAGTCAGGGTCAGTGATAACGTCGGCGTGTTTCAAACTGCTGCACACGGCNTTTTGCGGCCACCTTCTGAACAACAAGTAAGAANAGAGAGGAAACGTNTGGGGGCGCAACCCGGGGACGCAA] [+] EMBL BX469628 [ATCGGCACGAGGGTTCTAATTTTGTCCCGCCCTACCCCACAGACGGCAGTGGATGT GAGGT GGTT GTGAGCAAAAAAGGAAAAAAAACAAAAAAAGCTGCAAGCTCTAGGCCCCAGCTGTCCTCG TTTTAATTTCGGTCTCGGCCCAGCGCACAC GCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATA GTTCCGTGAAGGAGCTGATTGAGGCGGCTATTCAGGTGC GCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGC GGCGCTACGCACCACCACAGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGGACGGCCGTTTGTAAAGCGATCAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGGCCCCTGCGGTACCTGCCGTCAGACACTGGCGGAATTCAGCGCCAAAGATATCCCCATCGTANTCTAGTCAAGCCTGCGCCAGTCAGGGTCAGTGATAACGTCGGCGTGTTTCAAACTGCTGCACACGGCNTTTTGCGGCCACCTTCTGAACAACAAGTAAGAANAGAGAGGAAACGTNTGGGGGCGCAACCCGGGGACGCAA] [+] EMBL AL693447 [ TGTAGGGGTGGGTTGGTGAGCAAAAAAGGAAAAAAAACAAAAAAAGCTGC AGCTCTAGGCCCCAGCTGTCCTCGATTTTAATTTCGGTCTCGGCCCAGCGCACACTGCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATATGTTCCGTGAAGGAGCTGATTGAGGCGGCTATTCAGGTGCTGCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGCTGGCGCTACGCACCACCAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7390#0 AGATCNCCACGAGGTGNACATTTAAACGTTCGGCGGTTTGTTTACTGTTTCTAATTTTGT 60 consensus_7390#1 -----------------------------------ATCGGCACGAGGGTTCTAATTTTGT 25 * * * ************ consensus_7390#0 CCCGCCCTACCCCACAGACGGCAGTGGGTGTGAGGTGGTTGTGAGCAAAAAAGGAAAAAA 120 consensus_7390#1 CCCGCCCTACCCCACAGACGGCAGTGGATGTGAGGTGGTTGTGAGCAAAAAAGGAAAAAA 85 *************************** ******************************** consensus_7390#0 AACAAAAAAAGCTGCAAGCTCTAGGCCCCAGCTGTCCTCGTTTTAATTTCGGTCTCGGCC 180 consensus_7390#1 AACAAAAAAAGCTGCAAGCTCTAGGCCCCAGCTGTCCTCGTTTTAATTTCGGTCTCGGCC 145 ************************************************************ consensus_7390#0 CAGCGCACACGCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAAC 240 consensus_7390#1 CAGCGCACACGCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAAC 205 ************************************************************ consensus_7390#0 AACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCC 300 consensus_7390#1 AACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCC 265 ************************************************************ consensus_7390#0 GTGAAGGAGCTGATCGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGC 360 consensus_7390#1 GTGAAGGAGCTGATTGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGC 325 ************** ********************************************* consensus_7390#0 AACTTTCCCGTCGGGGCGGCGCTACGCACCACCACGGGCGAGATCGTGACCGGCTGCAAC 420 consensus_7390#1 AACTTTCCCGTCGGGGCGGCGCTACGCACCACCACAGGCGAGATCGTGACCGGCTGCAAC 385 *********************************** ************************ consensus_7390#0 GTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGAACGGCCGTTTGCAAAGCG 480 consensus_7390#1 GTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGGACGGCCGTTTGTAAAGCG 445 ***************************************** *********** ****** consensus_7390#0 ATTAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAA 540 consensus_7390#1 ATCAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAA 505 ** ********************************************************* consensus_7390#0 TTTACGGCCCCCTGCGGTACCTGCCGTCAGACACTGGCGGAATTCAGCGCCAAAGATATC 600 consensus_7390#1 TTTACGGGCCCCTGCGGTACCTGCCGTCAGACACTGGCGGAATTCAGCGCCAAAGATATC 565 ******* **************************************************** consensus_7390#0 CCCATCT--ATCTAGTCAAGCCTGCGCCGGTAAGGGTCA-TGATAACGTCGCTGT---TC 654 consensus_7390#1 CCCATCGTANTCTAGTCAAGCCTGCGCCAGTCAGGGTCAGTGATAACGTCGGCGTGTTTC 625 ****** ****************** ** ******* *********** ** ** consensus_7390#0 AAACTGCTGCCACACGCCTTTTCGC--CCACCTTCCTGAACAACAAGTAAAGAAAAGAGA 712 consensus_7390#1 AAACTGCTGC-ACACGGCNTTTTGCGGCCACCTTC-TGAACAACAAGTAA-GAANAGAGA 682 ********** ***** * *** ** ******** ************** *** ***** consensus_7390#0 AGAAAACGTTTGGGGGCGCAACCCGGGGACGCACAAAACTTGTAACTTAAACTTAACGAC 772 consensus_7390#1 GGAAA-CGTNTGGGGGCGCAACCCGGGGACGCAA-------------------------- 715 **** *** *********************** consensus_7390#0 GTTGTTGTGCCCCCCTTCCCACGTTATCTGCACCATCAGGAAGCTATCTTATCCGATCCC 832 consensus_7390#1 ------------------------------------------------------------ consensus_7390#0 GACCTCCACCCACCGCCTATTTTTTTCGCGTATAAAAATACACACATG 880 consensus_7390#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||