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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7391#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 990 fasta sequence
[CCGCAAAACACTAACGTATGTACGCAAACAATACAGTGTCACAAGGAAACGTTTTGTTCTTTAATTTAAGTAGATAGTTTTTTAATGGTAGCGATAGTGAAGCTGCTGCGTGTGCACTCAGGCACAACGTTGGCTTCAGCCCCCCCACAAAACAGTAAGGTAAAACACCATAGTAAGCAGCTGTCCGGATGGCCAAATCACCAAATCACCAACAGAGGGAGACGGCGTTAGGTGGAAATGCCAATTGTGACACTATTATAGTTTACAGACCGAAAGGAGAAAGTTAAGACACTTGTTTAGGGTGTGTACTTTTGGATAGTGAGTTCTAGGATTTATAGGTTTAACAGATCTTTTAATATTGTTTTAATTTCATTTATAAGCGCAAACTGTAAACAAAAATTGTAGCAAATTGAAACGAGTTCGTACTCGTACTCGTACTGTGGAGCAAGCAGAAGCAGAAGCTTATTTATGAAACATTAGTTCGAAAATAACCAACACAACAGCTACTTCCTATTACTGTGAGTATGTAAGACGTTTGTTTATTCCAA-TTTAAACCACCACCCAATTAGAATCTGCAGGACTGCACTCTATTCCAATTCTCTTCTATTCCAATTAAACCACCGCCCAATTAGAATCTGCAGGACTGCACTAGTCAGAACCAGCTTCCCGCTCCTTATCATCCGCTTTGTACGAGAATAATCGTCTATGTTTATGTGTGCATATTTAAACGCTATTGCGCATAACGATTTCTGTTTTCCGTTGAAGGCCGTTTGCCAGCGGCTAGCTTTGCACTTATGAATCTTTCCAACAAAAAAAAAAAACCAAGAGCTCTATATCGTATGGCATTGTATTGTATTACTAAGCTTCGTTGTTAAACATTCTCTGCGCTGCCATAAAGGCACTGTCTCTGTGTTTAAGCATCAAGCATCTTCTCAGTGGACCACACGTGTAGTGCGCACAAATTGGCGTGCGCAAAATGTGATTAGCAGG]
[+] EMBL BM628649 [CCGCAAAACACTAACGTATGTACGCAAACAATACAGTGTCACAAGGAAACGTTTTGTTCTTTAATTTAAGTAGATAGTTTTTTAATGGTAGCGATAGTGAAGCTGCTGCGTGTGCACTCAGGCACAACGTTGGCTTCAGCCCCCCCACAAAACAGTAAGGTAAAACACCATAGTAAGCAGCTGTCCGGATGGCCAAATCACCAAATCACCAACAGAGGGAGACGGCGTTAGGTGGAAATGCCAATTGTGACACTATTATAGTTTACAGACCGAAAGGAGAAAGTTAAGACACTTGTTTAGGGTGTGTACTTTTGGATAGTGAGTTCTAGGATTTATAGGTTTAACAGATCTTTTAATATTGTTTTAATTTCATTTATAAGCGCAAACTGTAAACAAAAATTGTAGCAAATTGAAACGAGTTCGTACTCGTACTCGTACTGTGGAGCAAGCAGAAGCAGAAGCTTATTTATGAAACATTAGTTCGAAAATAACCAACACAACAGCTACTTCCTATTACTGTGAGTATGTAAGACGTTTGTTTATTCCAATTTTAAACCACCACCCAATTAGAATCTGCAGGACTGCACTCTATTCCCATTCTCTTCTATTCCAAT ]
[+] EMBL BM606011 [ ccgCAAATCACCAAATCACCAACAGAGGGAGACGGCGTTAGGTGGAAATGCCAATTGTGACACTATTATAGTTTACAGACCGAAAGGAGAAAGTTAAGACACTTGTTTAGGGTGTGTACTTTTGGATAGTGAGTTCTAGGATTTATAGGTTTAACAGATCTTTTAATATTGTTTTAATTTCATTTATAAGCGCAAACTGTAAACAAAAATTGTAGCAAATTGAAACGAGTTCGTACTCGTACTCGTACTGTGGAGCAAGCAGAAGCAGAAGCTTATTTATGAAACATTAGTTCGAAAATAACCAACACAACAGCTACTTCCTATTACTGTGAGTATGTAAGACGTTTGTTTATTCCAA TTTAAACCACCACCCAATTAGAATCTGCAGGACTGCACTCTATTCCAATTCTCTTCTATTCCAATTAAACCACCGCCCAATTAGAATCTGCAGGACTGCACTAGTCAGAACCAGCTTCCCGCTCCTTATCATCCGCTTTGTACGAGAATAATCGTCTATGTTTATGTGTGCATATTTAAACGCTATTGCGCATAACGATTTCTGTTTTCCGTTGAAGGCCGTTTGCCAGCGGCTAGCTTTGCACTTATGAATCTTTCCAACAAAAAAAAAAAACCAAGAGCTCTATATCGTATGGCATTGTATTGTATT ]
[+] EMBL AL930242 [ cccgaggtGAG TCGTACTCGTACTCGTACTGTGGAGC AGCAGAAGCAGAAGCTTATTTATGAAACATTAGTTCGAAAATAACCAACACAACAGCTACTTCCTATTACTGTGAGTATGTAAGACGTTTGTTTATTCCAA TTTAAACCACCACCCAATTAGAATCTGCAGGACTGCACTCTATTCCAATTCTCTTCTATTCCAATTAAACCACCGCCCAATTAGAATCTGCAGGACTGCACTAGTCAGAACCAGCTTCCCGCTCCTTATCATCCGC TTGTACGAGAATAATCGTCTATGTTTATGTGTGCATATTTAAACGCTATTGCGCATAACGATTTCTGTTTTCCGTTGAAGGCCGTTTGCCAGCGGCTAGCTTTGCACTTATGAATCTTTCCAACAAAAAAAAAAAACCAAGAGCTCTATATCGTATGGCATTGTATTGTATTACTAAGCTTCGTTGTTAAACATTCTCTGCGCTGCCATAAAGGCACTGTCTCTGTGTTTAAGCATCAAGCATCTTCTCAGTGGACCACACGTGTAGTGCGCACAAATTGGCGTGCGCAAAATGTGATTAGCAGG]
consensusID : consensus_7391#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 869 fasta sequence
[AAGAATCCCCGAGGTTAATGTGAGTATGTAAGACGTCGTTATTCCAATTTAAACCACCAACCAATTAGAATCTGCAGGACTGCACTCTATTCCAATTCTCTTCTATTCCAATTAAACCACCGCCCAATTAGAATCTGCAGGACTGCACTAGTCAGAACCAGCTTCCCGCTCCTTATCATCCGCTTTGTACGAGAATAATCGTCTATGTTATATGTGTGCATATTTAAACGCTATTGCGCATAACGATTTCTGTNTTNCCGTTGAAGGCCGTTTGCCAGCGGCTAGCTTTGCACTTATGAATCTTTCCAAC-AAAAAAAAAAAACCAAGAGCTCTATATCGTATGGCATTGTATTGTATTACTAAGCTTCGTTGTTAAACATTCTCTGCGCTGCCATAAAGGCACTGTCTCTGTGTTTTAAGCATCAAGCATCTTCTCAGTGGACCACACGTGTAGTGCGCACAAATTGGCGTGCGCAAAATGTGATTAGCAGGCGCGCCCGGTGTTTGACCGCGCGCGCTCTATCTGTATCGTTGTTATGTGTTACGTGTGTCGCTGTTTTGTTGCCTCCCGAACACAAGTGTGTGTGTATTTGTCCATTTATAAACTATCGTTTATTGAGGGGAGGGAGAGAAGGATAAAATCACAAGCTATTTGAAACGTACAACATGGGGCGGAGACGTTCATTTATGGCCCCCTGTAACAAATAACAAACGATCAAACGATCAAAAGCAAAACACCGTGACGCTGGAACAGGAATTACTCGGACGCTAGAAATTAAGTAGGTCATATTGAAAGACGGGAATGAGACTAGAATGCGCGAAATATTGTGTAACAGCAAACAACAAATTATACACAAATACTTTTCACA]
[+] EMBL AL933537 [AAGAATCCCCGAGGTTAATGTGAGTATGTAAGACGTCGTTATTCCAATTTAAACCACCAACCAATTAGAATCTGCAGGACTGCACTCTATTCCAATTCTCTTCTATTCCAATTAAACCACCGCCCAATTAGAATCTGCAGGACTGCACTAGTCAGAACCAGCTTCCCGCTCCTTATCATCCGCTTTGTACGAGAATAATCGTCTATGTTATATGTGTGCATATTTAAACGCTATTGCGCATAACGATTTCTGTNTTNCCGTTGAAGGCCGTTTGCCAGCGGCTAGCTTTGCACTTATGAATCTTTCCAAC AAAAAAAAAAAACCAAGAGCTCTATATCGTATGGCATTGTATTGTATTACTAAGCTTCGTTGTTAAACATTCTCTGCGCTGCCATAAAGGCACTGTCTCTGTGTTTTAAGCATCAAGCATCTTCTCAGTGGACCACACGTGTAGT ]
[+] EMBL BX609078 [ AATCTGCAGGACTGCACTCTATTCCAATTCTCTTCTATTCCAATTAAACCACCACCCAATTAGAATCTACAGGACTGCACTAGTCAGAACCAGCTTCGCGCTCCTTCTCATCCGCTTTGTACGAAAATAATCGTCTATGTT TATGTGTGAATATTTAAACGCTATTGCGCATAACTATTTCTGT TTTCCGTTGAAGGCCGTTTGCCAGCGGCTAGCTTTGCACTTATGAATATTTCCAAC AAAAAAAACCAAGAGCTCTATATCGTATGGCATTGTATTGTATTAATAGGCTT TTGTTAAACATTCTATACGCTGCCATAAAGGCACTGTCTCTGTGTTTTAAGCATCAAGCATCTTCTCAGTGGACCACACGTGTAGTGCGCACAAATTGGCGTGCGCAAAATGTGATTAGCAGGCGCGCCCGGTGTTTGACCGCGCGCGCTCTATCTGTATCGTTGTTATGTGTTACGTGTGTCGCTGTTTTGTTGCCTCCCGAACACAAGTGTGTGTGTATTTGTCCATTTATAAACTATCGTTTATTGAGGGGAGGGAGAGAAGGATAAAATCACAAGCTATTTGAAACGTACAACATGGGGCGGAGACGTTCATTTATGGCCCCCTGTAACAAATAACAAACGATCAAACGATCAAAAGCAAAACACCGTGACGCTGGAA ]
[+] EMBL BX620182 [ CAGCGGCTAGCTTTGCACTTATGAATCTTTCCAACAAAAAAAAAAAAACCAAGAGCTCTATATCGTATGGCATTGTATTGTATTACTAAGCTTCGTTGTTAAACATTCTCTGCGCTGCCATAAAGGCACTGTCTCTGTGTTTTAAGCATCAAGCATCTTCTCAGTGGACCACACGTGTAGTGCGCACAAATTGGCGTGCGCAAAATGTGATTAGCAGGCGCGCCCGGTGTTTGACCGCGCGCGCTCTATCTGTATCGTTGTTATGTGTTACGTGTGTCGCTGTTTTGTTGCCTCCCGAACACAAGTGTGTGTGTATTTGTCCATTTATAAACTATCGTTTATTGAGGGGAGGGAGAGA G AAATCACAAGCTATTTGAAACGTACAACATGGGGCGGAGACGTTCATTTATGGCCCCTTG TAACAAACGATCAAACGATCAAAAGCAAAACACCGTGACGCTGGAACAGGAATTACTCGGACGCTAGAAATTAAGTAGGTCATATTGAAAGACGGGAATGAGACTAGAATGCGCGAAATATTGTGTAACAGCAAACAACAAATTATACACAAATACTTTTCACA]
consensusID : consensus_7391#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence
[AATCCCCCGAGGTTAAAAACTATCTACTTAAATTACAGAACAAACGTTTCCTTGTGACNCTGTATTGTTTGCGTACATACGTTAGTGTTTGTTTCGATTTTTCTATATAAGTTTGTATAGAGACGAACAGGATGATAGTAAGATGGTTTAAAATTGGTGCAAAAACGGTTTAGAAAAAACACGTGTTGGTGTAAGATTCGATAAAATTGAGTCGTTTGAGTAGTTTTCCGATTAGTATTGGCAGTCTTTGCGTATGGGGGGTTTTAGTGAACCACCGATCTACACACAGTACAGGAGAGGAAGCATCTTGTTATACGGGATTTTCATCTGAGCGAGCTGTTACCTTCAAAAGGGATAGTTAATATGTATCCGCTNTTTTTTTCCTTTCTTCTTCTCTACAGTATAATGGCTGTATGGCTTGCGTATGTGTGTAAGCNCAATCTTACTAAAAAGGGTAACAATAATTAACAAAATCTTAAACGTACAGGAAAATCAATACATATCATACATACATACACACAGGAAAGCTTTGCGCGTGGTGCCCAGGCAGGGCTGTATTACCAAAGTCCCACACCTTACAGATAGAGGCGCACGCGGGATTGCATTTGTTCCTNCAGTAACGGCTTTCACGCCAACACCGTGCAACGCTTTACACATAATCCCGGNCGACAACNACCAACAAATAAAAACTCTTACTTCACTTTACACNCACGNAAAAAAATTNTGGTCTTTCATATGTTACACGCGCACCNCGTTGGNANAAAC]
[+] EMBL AL933458 [AATCCCCCGAGGTTAAAAACTATCTACTTAAATTACAGAACAAACGTTTCCTTGTGACNCTGTATTGTTTGCGTACATACGTTAGTGTTTGTTTCGATTTTTCTATATAAGTTTGTATAGAGACGAACAGGATGATAGTAAGATGGTTTAAAATTGGTGCAAAAACGGTTTAGAAAAAACACGTGTTGGTGTAAGATTCGATAAAATTGAGTCGTTTGAGTAGTTTTCCGATTAGTATTGGCAGTCTTTGCGTATGGGGGGTTTTAGTGAACCACCGATCTACACACAGTACAGGAGAGGAAGCATCTTGTTATACGGGATTTTCATCTGAGCGAGCTGTTACCTTCAAAAGGGATAGTTAATATGTATCCGCTNTTTTTTTCCTTTCTTCTTCTCTACAGTATAATGGCTGTATGGCTTGCGTATGTGTGTAAGCNCAATCTTACTAAAAAGGGTAACAATAATTAACAAAATCTTAAACGTACAGGAAAATCAATACATATCATACATACATACACACAGGAAAGCTTTGCGCGTGGTGCCCAGGCAGGGCTGTATTACCAAAGTCCCACACCTTACAGATAGAGGCGCACGCGGGATTGCATTTGTTCCTNCAGTAACGGCTTTCACGCCAACACCGTGCAACGCTTTACACATAATCCCGGNCGACAACNACCAACAAATAAAAACTCTTACTTCACTTTACACNCACGNAAAAAAATTNTGGTCTTTCATATGTTACACGCGCACCNCGTTGGNANAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7391#0 CCGCAAAACACTAACGTATGTACGCAAACAATACAGTGTCACAAGGAAACGTTTTGTTCT 60
consensus_7391#1 ------------------------------------------------------------
consensus_7391#2 ------------------------------------------------------------
consensus_7391#0 TTAATTTAAGTAGATAGTTTTTTAATGGTAGCGATAGTGAAGCTGCTGCGTGTGCACTCA 120
consensus_7391#1 ------------------------------------------------------------
consensus_7391#2 ------------------------------------------------------------
consensus_7391#0 GGCACAACGTTGGCTTCAGCCCCCCCACAAAACAGTAAGGTAAAACACCATAGTAAGCAG 180
consensus_7391#1 ------------------------------------------------------------
consensus_7391#2 ------------------------------------------------------------
consensus_7391#0 CTGTCCGGATGGCCAAATCACCAAATCACCAACAGAGGGAGACGGCGTTAGGTGGAAATG 240
consensus_7391#1 ------------------------------------------------------------
consensus_7391#2 -------------AATCCCCCGAGGTTAAAAACTATCTACTTAAATTACAGAACAAACGT 47
consensus_7391#0 CCAATTGTGACACTATTATAGTTTACAGACCGAAAGGAGAAAGTTAAGACACTTGTTTAG 300
consensus_7391#1 ------------------------------------------------------------
consensus_7391#2 TTCCTTGTGACNCTGT-ATTGTTTGCGTACATACGTTAGTGTTTGTTTCGATTTTTCTA- 105
consensus_7391#0 GGTGTGTACTTTTGGATAGTGAGTTCTAGGATTTATAGGTTTAACAGATCTTTTAATATT 360
consensus_7391#1 ------------------------------------------------------------
consensus_7391#2 ----TATAAGTTTGTATAGAGACGAACAGGAT------GATAGTAAGATGGTTTAAAATT 155
consensus_7391#0 GTTTTAATTTCATTT--ATAAGCGCAAACTGTAAACAAAAATTGTAGCAAATTGAAACGA 418
consensus_7391#1 ------------------------------------------------------------
consensus_7391#2 GGTGCAAAAACGGTTTAGAAAAAACACGTGTTGGTGTAAGATTCGATAAAATTGAGTCGT 215
consensus_7391#0 GTTCGTACTCGTACTCGTACTGTGGAGCAAGCAGAAGCAGAAGCTTATTTATGAAACATT 478
consensus_7391#1 ------------------------------------------------------------
consensus_7391#2 TTGAGTAGTTTTCCGATTAGTATTGGCAGTCTTTGCGTATGGGGGGTTTTAGTGAACCAC 275
consensus_7391#0 AGTTCGAAAATAACCAACACAACAGCTACTTCCTATTACTGTGAGTATGTAAGACGTTTG 538
consensus_7391#1 ---------------------AAGAATCCCCGAGGTTAATGTGAGTATGTAAGACGTC-- 37
consensus_7391#2 CGATCTACACACAGTACAGGAGAGGAAGCATCTTGTTATACGGGATTTTCATCTGAGCGA 335
* *** * * * *
consensus_7391#0 TTTATTCCAATTTAAACCACCACCCAATTAGAATCTGCAGGACTGCACTCTATTCCAATT 598
consensus_7391#1 GTTATTCCAATTTAAACCACCAACCAATTAGAATCTGCAGGACTGCACTCTATTCCAATT 97
consensus_7391#2 GCTGTTACCTTCAAAAGGGATAGTTAATATGTATCCGCTNTTTTTTTCCTTTCTTCTTCT 395
* ** * * *** * *** * *** ** * * * * * *
consensus_7391#0 CTCTTCTATTCCAATTAAACCACCGCCCAATTAGAATCTGCAGGACTGCACTAGTCAGAA 658
consensus_7391#1 CTCTTCTATTCCAATTAAACCACCGCCCAATTAGAATCTGCAGGACTGCACTAGTCAGAA 157
consensus_7391#2 CTACAGTATAATGGCTGTATGGCTTGCGTATGTGTGTAAGCNCAATCTTACTAAAAAGGG 455
** *** * * * * ** * * ** * **** **
consensus_7391#0 CCAGCTTCCCGCTCCTTATCATCCGCTTTGTACGAGAATAATCGTCTATGTT-TATGTGT 717
consensus_7391#1 CCAGCTTCCCGCTCCTTATCATCCGCTTTGTACGAGAATAATCGTCTATGTTATATGTGT 217
consensus_7391#2 TAACAATAATTAACAAAATCTTAAACGT-ACAGGAAAATCAATACATATCATACATACAT 514
* * * *** * * * * ** *** * *** * ** *
consensus_7391#0 GCATATTTAAACGCTATTGCGCATAACGATTTCT----GTTTTCC-GTTGAAGGCCGTTT 772
consensus_7391#1 GCATATTTAAACGCTATTGCGCATAACGATTTCT----GTNTTNCCGTTGAAGGCCGTTT 273
consensus_7391#2 ACACACAGGAAAGCT-TTGCGCGTGGTGCCCAGGCAGGGCTGTATTACCAAAGTCCCACA 573
** * ** *** ****** * * * * *** **
consensus_7391#0 GCCAGCGGCTAGCTTTGCACTTATGAAT-CTTTCCAACAAAAAAAAAAAACCAAGAGCTC 831
consensus_7391#1 GCCAGCGGCTAGCTTTGCACTTATGAAT-CTTTCCAACAAAAAAAAAAAACCAAGAGCTC 332
consensus_7391#2 CCTTACAGATAGAGGCGCACGCGGGATTGCATTTGTTCCTNCAGTAACGGCTTTCACGCC 633
* * * *** **** ** * * ** * * ** * * *
consensus_7391#0 TATATCGTATGGCATTGTATTGTATTACTAAGCTTCGTTGTTAAACATTCTCTGCGCTGC 891
consensus_7391#1 TATATCGTATGGCATTGTATTGTATTACTAAGCTTCGTTGTTAAACATTCTCTGCGCTGC 392
consensus_7391#2 AACACCGT---GCAACGCTTTACACA--TAATCCCGGNCGACAACNACCAACAA------ 682
* * *** *** * ** * *** * * * ** * *
consensus_7391#0 CATAAAGGCACTGTCTCTGTGTTT-AAGCATCAAGCATCTTCTCAGTGGACCACACGTGT 950
consensus_7391#1 CATAAAGGCACTGTCTCTGTGTTTTAAGCATCAAGCATCTTCTCAGTGGACCACACGTGT 452
consensus_7391#2 -ATAAAAACTCTTACTTCACTTTACACNCACGNAAAAAAATTNTGGTCTTTCATATGTTA 741
***** * ** ** ** * ** * * * ** ** * **
consensus_7391#0 AGTGCGCACAA-ATTGGCGTGCGCAAAATGTGATTAGCAGG------------------- 990
consensus_7391#1 AGTGCGCACAA-ATTGGCGTGCGCAAAATGTGATTAGCAGGCGCGCCCGGTGTTTGACCG 511
consensus_7391#2 CACGCGCACCNCGTTGGNANAAAC------------------------------------ 765
****** **** *
consensus_7391#0 ------------------------------------------------------------
consensus_7391#1 CGCGCGCTCTATCTGTATCGTTGTTATGTGTTACGTGTGTCGCTGTTTTGTTGCCTCCCG 571
consensus_7391#2 ------------------------------------------------------------
consensus_7391#0 ------------------------------------------------------------
consensus_7391#1 AACACAAGTGTGTGTGTATTTGTCCATTTATAAACTATCGTTTATTGAGGGGAGGGAGAG 631
consensus_7391#2 ------------------------------------------------------------
consensus_7391#0 ------------------------------------------------------------
consensus_7391#1 AAGGATAAAATCACAAGCTATTTGAAACGTACAACATGGGGCGGAGACGTTCATTTATGG 691
consensus_7391#2 ------------------------------------------------------------
consensus_7391#0 ------------------------------------------------------------
consensus_7391#1 CCCCCTGTAACAAATAACAAACGATCAAACGATCAAAAGCAAAACACCGTGACGCTGGAA 751
consensus_7391#2 ------------------------------------------------------------
consensus_7391#0 ------------------------------------------------------------
consensus_7391#1 CAGGAATTACTCGGACGCTAGAAATTAAGTAGGTCATATTGAAAGACGGGAATGAGACTA 811
consensus_7391#2 ------------------------------------------------------------
consensus_7391#0 ----------------------------------------------------------
consensus_7391#1 GAATGCGCGAAATATTGTGTAACAGCAAACAACAAATTATACACAAATACTTTTCACA 869
consensus_7391#2 ----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||