These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7395#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 764 fasta sequence [TACGGCGGCAGGTTGTTCAGTTCCCCCTTGATTTTAGCTGCCGCAACAACACAGCAGCATTTCCTTACCGAAGCAGCATCTCCAATCCATCCGAATCCATAAAGTGTTTACACGAAACTTATCACAATAAACATCACACTATCTGCCTGTGTACCTTCGCCTTATCTGCTGCGTAAGCGTCATGCGATCCAATCGACTGTATCGAACGTAAAGTCGTTTCACAGCATA----ACACACACACACCGGGGAAAGGAGCGGTTCTAAAAATAGTGCACACTGTTGTGTGGGGTGCTTAATTTATGCTCCCCTGC------TGCTGTTGCTGCTAGATCTGAAACAAGGCAACCTGCGATCGTTGAGACAAATCATAGCTGGAGTAGTGTTAGCGCTGCTGCAAGCGAAGCAATTTCTGCGTAACTTTGTGCTCGAAGAAGTCGTTCCTCTGCTTCTACAATGACCGACCTAACGACCAAGTACAATATCATCGATGAAAAGCCACCCTTTAACGCACCGTTGAAGGGACAATACAAGCAGGGCTTCGGTTACTACACCATGCGCGAGCGGCTGCCCGTCATCCTGACGCAGGTGATTGATCAGCTGTCCAAAGACAA-GGAGCAGATTGTGGCCAACTTTGGTGGCGAAACGGCGCGCGAAGAGTTGAANGGTGCGATCGGGGAAATTTCCAAGCTGAAGTATGAGCTGCAGACGGATAANGACTTTCGCCCGATAAAGACNGCGCTCGGGGACGANACGGTGTGGAACAGCTTTCT] [+] EMBL BX628196 [TACGGCGGCAGGTTGTTCAGTTCCCCCTTGATTTTAGCTGCAGCAACAACACAGCAGCATTTCCTCACCGAAGCAGCATCTCCAATCCATCCGAATCCATAAAGTGTTTACACGAAACTTATCACAATAAACATCACACTATCTGCCTGTGTACCTTCGCCTTATCTGCTGCGTAAGCGTCGTGCGATCCAATCGACTGTATCGAACGTAAAGTCGTTTCACAGCATA ACACACACACACCGGGGAAAGGAGCGGTTCTAAAAATAGTGCACACTGTTGTGTGGGGTGCTTAATTTATGCTCCCCTGC TGCTGTTGCTGCTAGATCTGAAACAAGGCAACCTGCGATCGTTGAGACAAATCATAGCTGGAGTAGTGTTAGCGCTGCTGCAAGCGAAGCAATTTCTGCGTAACTTTGTGCTCGAAGAAGTCGTTCCTCTGCTTCTACAATGACCGACCTAACGACCAAGTACAATATCATCGATGAAAAGCCACCCTTTAACGCACCGTTGAAGGGACAATACAAGCAGGGCTTCGGTTACTACACCATGCGCGAGCGACTGCCCGTCATCCTGACGCAGGTGATTGATCAGCTGTCCAAGGACAA GGAGCAGATTGTGGCCAACTTTGGTGGCGAAACGGCGCGCGAAGAGTTGAANGGTGCGATCGGGGAAATTTCCAAGCTGAAGTATGAGCTGCAGACGGATAANGACTTTCGCCCGATAAAGACNGCGCTCGGGGACGANACGGTGTGGAACAGCTTTCT] [+] EMBL BM622343 [ CCGCAACAACACAGCAGCATTTCCTTACCGAAGCAGCATCTCCAATCCATCCGAATCCATAAAGTGTTTACACGAAACTTATCACAATAAACATCACACTATCTGCCTGTGTACCTTCGCCTTATCTGCTGCGTAAGCGTCATGCGATCCAATCGACTGTATCGAACGTAAAGTCGTTTCACAGCATA ACACACACACACCGGGGAAAGGAGCGGTTCTAAAAATAGTGCACACTGTTGTGTGGGGTGCTTAATTTATGCTCCCCTGC TGCTGTTGCTGCTAGATCTGAAACAAGGCAACCTGCGATCGTTGAGACAAATCATAGCTGGAGTAGTGTTAGCGCTGCTGCAAGCGAAGCAATTTCTGCGTAACTTTGTGCTCGAAGAAGTCGTTCCTCTGCTTCTACAATGACCGACCTAACGACCAAGTACAATATCATCGATGAAAAGCCACCCTTTAACGCACCGTTGAAGGGACAATACAAGCAGGGCTTCGGTTACTACACCATGCGCGAGCGGCTGCCCGTCATCCTGACGCAGGTGATTGATCAGCTGTCCAAAGACAA GGAGCAGATTGTGGCCAACTTTGGTGGCGAAACGGCGCGCGAAGAGTTGAAGGGTGCGATCGGGGAAATTTCCAAGCT ] [+] EMBL BM656453 [ CCGCAACAACACAGCAGCATTTCCTTACCGAAGCAGCATCTCCAATCCATCCGAATCCATAAAGTGTTTACACGAAACTTATCACAATAAACATCACACTATCTGCCTGTGTACCTTCGCCTTATCTGCTGCGTAAGCGTCATGCGATCCAATCGACTGTATCGAACGTAAAGTCGTTTCACAGCATA ACACACACACACCGGGGAAAGGAGCGGTTCTAAAAATAGTGCACACTGTTGTGTGGGGTGCTTAATTTATGCTCCCCTGC TGCTGTTGCTGCTAGATCTGAAACAAGGCAACCTGCGATCGTTGAGACAAATCATAGCTGGAGTAGTGTTAGCGCTGCTGCAAGCGAAGCAATTTCTGCGTAACTTTGTGCTCGAAGAAGTCGTTCCTCTGCTTCTACAATGACCGACCTAACGACCAAGTACAATATCATCGATGAAAAGCCACCCTTTAACGCACCGTTGAAGGGACAATACAAGCAGGGCTTCGGTTACTACACCATGCGCGAGCGGCTGCCCGTCATCCTGACGCAGGTGATTGATCAGCTGTCCAAAGACAA GGAGCAGATTGT ] [+] EMBL BM595734 [ ccgGCAGCATCTCCAATCCATCCGAATCCATAAAGTGTTTACACGAAACTTATCACAATAATTATCATACTATCTGCCTGTGTACCTTCGCCTTATCTGCTGCGTAAGCGTCGTGCGATCCAATCGACTGTATCGAACGTAAAGTCGTTTCACAGCATAACACACACACACACACCGGGGAAAGGAGCGGTTCTAAAAATAGTGCACACTGTTGTGTGGGGTGCTTAATTTATGCTCCCCTGCTGCTGTTGCTGTTGCTGCTAGATCTGAAACAAGGCAACCTGCGATCGTTGAGACAAATCATAGCTGGAGTAGTGTTAGCGCTGCTGCAAGCGAAGCAATTTCTGCGTAACTTTGTGCTCGAAGAAGTCGTTCCTCTGCTTCTACAATGACCGACCTAACGACCAAGTACAATATCATCGATGAAAAGCCACCCTTTAACGCACCGTTGAAGGGACAATACAAGCAGGGCTTCGGTTACTACACCATGCGCGAGCGACTGCCCGTCATCCTGACGCAGGTGATTGATCAGCTGTCCAAGGA ] [+] EMBL BX626605 [ AGCATCTCCAATCCATCCGAATCCATAAAGTGTTTACACGAAACTTATCACAATAAACATCACACTATCTGCCTGTGTACCTTCGCCTTATCTGCTGCGTAAGCGTCATGCGATCCAATCGACTGTATCGAACGTAAAGTCGTTTCACAGCATA ACACACACACACCGGGGAAAGGAGCGGTTCTAAAAATAGTGCACACTGTTGTGTGGGGTGCTTAATTTATGCTCCCCTGC TGCTGTTGCTGCTAGATCTGAAACAAGGCAACCTGCGATCGTTGAGACAAATCATAGCTGGAGTAGTGTTAGCGCTGCTGCAAGCGAAGCAATTTCTGCGTAACTTTGTGCTCGAAGAAGTCGTTCCTCTGCTTCTACAATGACCGACCTAACGACCAAGTACAATATCATCGATGAAAAGCCACCCTTTAACGCACCGTTGAAGGGACAATACAAGCAGGGCTTCGGTTACTACACCATGCGCGAGCGGCTGCCCGTCATCCTGACGCAGGTGATTGATCAGCTGTCCAAAGACAAGGGAGCAGATTGTGGCCAACTTTGGTGGCGAAACGGCGCGCGAAGAGTTGAANGGTGCGATCGGGGAAATTTCCAAGCTGAAGTATGAGCTGCAGACGGATAANGACTTTCGCC ] [+] EMBL BM580016 [ ccgCCAATCCATCCGAATCCATAAAGTGTTTACACGAAACTTATCACAATAAACATCACACTATCTGCCTGTGTACCTTCGCCTTATCTGCTGCGTAAGCGTCATGCGATCCAATCGACTGTATCGAACGTAAAGTCGTTTCACAGCATA ACACACACACACCGGGGAAAGGAGCGGTTC ] consensusID : consensus_7395#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 191 fasta sequence [AGGCAGAATTGCGTACGAGGGGTAACAACACAGCAGCATTTCTCACCGAAGCAGCATCTCCAATCCATCCGAATCCATAAAGTGTTTACACGAAACTTATCACAATAAAGCATCACACTATCTGCCTGTGTACCTTCGCCTTATCTGACTGCGTAAGCGCTCGTGCGATCCAATCGACTGTATCGAACGTA] [+] EMBL BX466238 [AGGCAGAATTGCGTACGAGGGGTAACAACACAGCAGCATTTCTCACCGAAGCAGCATCTCCAATCCATCCGAATCCATAAAGTGTTTACACGAAACTTATCACAATAAAGCATCACACTATCTGCCTGTGTACCTTCGCCTTATCTGACTGCGTAAGCGCTCGTGCGATCCAATCGACTGTATCGAACGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7395#0 TACGGCGGCAGGTTGTTCAGTTCCCCCTTGATTTTAGCTGCCGCAACAACACAGCAGCAT 60 consensus_7395#1 -------------------AGGCAGAATTG--CGTACGAGGGGTAACAACACAGCAGCAT 39 * *** ** * * **************** consensus_7395#0 TTCCTTACCGAAGCAGCATCTCCAATCCATCCGAATCCATAAAGTGTTTACACGAAACTT 120 consensus_7395#1 TTC-TCACCGAAGCAGCATCTCCAATCCATCCGAATCCATAAAGTGTTTACACGAAACTT 98 *** * ****************************************************** consensus_7395#0 ATCACAATAAA-CATCACACTATCTGCCTGTGTACCTTCGCCTTATCTG-CTGCGTAAGC 178 consensus_7395#1 ATCACAATAAAGCATCACACTATCTGCCTGTGTACCTTCGCCTTATCTGACTGCGTAAGC 158 *********** ************************************* ********** consensus_7395#0 G-TCATGCGATCCAATCGACTGTATCGAACGTAAAGTCGTTTCACAGCATAACACACACA 237 consensus_7395#1 GCTCGTGCGATCCAATCGACTGTATCGAACGTA--------------------------- 191 * ** **************************** consensus_7395#0 CACCGGGGAAAGGAGCGGTTCTAAAAATAGTGCACACTGTTGTGTGGGGTGCTTAATTTA 297 consensus_7395#1 ------------------------------------------------------------ consensus_7395#0 TGCTCCCCTGCTGCTGTTGCTGCTAGATCTGAAACAAGGCAACCTGCGATCGTTGAGACA 357 consensus_7395#1 ------------------------------------------------------------ consensus_7395#0 AATCATAGCTGGAGTAGTGTTAGCGCTGCTGCAAGCGAAGCAATTTCTGCGTAACTTTGT 417 consensus_7395#1 ------------------------------------------------------------ consensus_7395#0 GCTCGAAGAAGTCGTTCCTCTGCTTCTACAATGACCGACCTAACGACCAAGTACAATATC 477 consensus_7395#1 ------------------------------------------------------------ consensus_7395#0 ATCGATGAAAAGCCACCCTTTAACGCACCGTTGAAGGGACAATACAAGCAGGGCTTCGGT 537 consensus_7395#1 ------------------------------------------------------------ consensus_7395#0 TACTACACCATGCGCGAGCGGCTGCCCGTCATCCTGACGCAGGTGATTGATCAGCTGTCC 597 consensus_7395#1 ------------------------------------------------------------ consensus_7395#0 AAAGACAAGGAGCAGATTGTGGCCAACTTTGGTGGCGAAACGGCGCGCGAAGAGTTGAAN 657 consensus_7395#1 ------------------------------------------------------------ consensus_7395#0 GGTGCGATCGGGGAAATTTCCAAGCTGAAGTATGAGCTGCAGACGGATAANGACTTTCGC 717 consensus_7395#1 ------------------------------------------------------------ consensus_7395#0 CCGATAAAGACNGCGCTCGGGGACGANACGGTGTGGAACAGCTTTCT 764 consensus_7395#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||