These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7398#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1463 fasta sequence [CACAGTTTCAATGATACAAGTTTGCATTTATTTGACTAATCGAAATATCTTTCCGACACGATGACATACAAGTTTTACCTGGCTTTATGCTAAAGTCACATTTCATTGGAATATTTTGCGAATTACGCCAAAGTCCTTGACATGTTCGTGCGTGTATCTGCATCTCCCATACTACTTACAATAAAACACATTTATAATATTCCAAACATGTTGGTTCTACTGGGTTCAAACATTTAACTACCGTATCGCAGCAGCGTGAATTTATCCTCCTGGAACTCATCCTGGTCGATCGACCAGATCATTGCTCCGCCAAGACCTTCGCTGTTGATGAATTCACATTTCTTTTGAATACTTTGCGGATTATCGTAGCTAACCCACTGATCGCCGCTAACCGCATAAGGAACGTGCTGCTCGCTATC-CCACATACGTTGTTCAAACATGTTCTTTACCTCATAGTAGGCTACAATGCCTGCTTCATCTGTATATGGTCCCTTGCGACCTGGACCGCTGGTGGGTCGCCTTGTTCCCTCAGTACTGGTGGAGGTCAGTGTGAACGTACGTCCAT-TTTCGGCTAAGCGCGACGATCAGTTTCGACTTTGGGGCACCTCCACCTATCCAATCGCCGACACTAGCCTTAACGTTCAGTCTTCTCTGATAGTCGGTTTCTACCGTACCCCAGCAAAGCGGGGCATTATGGCCAGTGTAGC-GTCCCACTTGCCGTTGTAATCATAGCTCATCAGAAGGATATAGTCAACATGTCGGGCAATTCCGGATACATCGTATTCTCTGTTAACACCCACCGATGTGGTTAAGATCAGATCGTGACTTTTTAGCTCAGATGCCAATGCCGACAGCAGCAGTACGAAGTTGCTATGATCGGAGCTGCTTTCGGGAAATTCCCAATCAATATCCGCTCCATTGAAACCATACTGTATACAGAAGCCACGCACATTGACTGCAAAGCTCTTTCGAAGGATCGAGTCGGCTGCCACTTTTGCGTACACGGATTTATCACAATTGGCACCACCAAACGACACAAGAGTCTTCAGCCTAGGATTTCTCTTACGCAAGTCGTTAAAGTTTTCCATAGCATTCTTCTCGTTGTCATCCTTTCGGATGAGCGTTCCATCGTCTTTAGGCTCCACAAACGCCTAGATAAGATGGGTGCACAGGTCCGGGTTTAGGTCCTCCACGGTGCATCTTCCCTTTCCGCTGCGATAGGTGGCCCATCCACCGTAGAATCCAAAGACAGGTTTGCTCGTCATATTTTGAAGTTATAAAGAGAATGAAGACCACAAATGTTCAGTAA-AGTAATGAGTACGAGTGCTTTGACTCCTCAACTGATACTGACTACGTTCGTCGACGCTGATTGTTCGTTCTAGTAAGACACGTAATCCAGGGAATAAATACCACATATGTTCAGTAAAACAACTAGTACGAGCTCTTTGCGGACGCGTGGGCGG] [+] EMBL CNS08U5V [CACAGTTTCAATGATACAAGTTTGCATTTATTTGACTAATCGAAATATCTTTCCGACACGATGACATACAAGTTTTACCTGGCTTTATGCTAAAGTCACATTTCATTGGAATATTTTGCGAATTACGCCAAAGTCCTTGACATGTTCGTGCGTGTATCTGCATCTCCCATACTACTTACAATAAAACACATTTATAATATTCCAAACATGTTGGTTCTACTGGGTTCAAACATTTAACTACCGTATCGCAGCAGCGTGAATTTATCCTCCTGGAACTCATCCTGGTCGATCGACCAGATCATTGCTCCGCCAAGACCTTCGCTGTTGATGAATTCACATTTCTTTTGAATACTTTGCGGATTATCGTAGCTAACCCACTGATCGCCGCTAACCGCATAAGGAACGTGCTGCTCGCTATC CCACATACGTTGTTCAAACATGTTCTTTACCTCATAGTAGGCTACAATGCCTGCTTCATCTGTATATGGTCCCTTGCGACCTGGACCGCTGGTGGGTCGCCTTGTTCCCTCAGTACTGGTGGAGGTCAGTGTGAACGTACGTCCAT TTTCGGCTAAGCGCGACGATCAGTTTCGACTTTGGGGCACCTCCACCTATCCAATCGCCGACACTAGCCTTAACGTTCAGTCTTCTCTGATAGTCGGTTTCTACCGTACCCCAGCAAAGCGGGGCATTATGGCCAGTGTAGC GTCCCACTTGCCGTTGTAATCATAGCTCATCAGAAGGATATAGTCAACATGTCGGGCAATTCCGGATACATCGTATTCTCTGTTAACACCCACCGATGTGGTTAAGATCAGATCGTGACTTTTTAGCTCAGATGCCAATGCCGACAGCAGCAGTACGAAGTTGCTATGATCGGAGCTGCTTTCGGGAAATTCCCAATCAATATCCGCTCCATTGAAACCATACTGTATACAGAAGCCACGCA ] [-] EMBL CNS08U5U [ TCGCTATCTCTACATACGTTGTTCAAACATGTTCTTTACCTCATAGTAGGCTACAATTCCTGCTTCATCTGTATATGGTCCCTTGCGACCTGGACCGCTGGTGGGTCGCCTTGTTCCCTCAGTACTGGTGGAGGTCAGTGTGAACGTACGTCCATAAAGCGGCTAAGC CGACGATCAGTTTCGACTTTGGGGCACCTCCACCTATCCAATCGCCGACACTAGCCTTAACGTTCAGTCTTCTCTGATAGTCGGTTTCTACCGTACCCCAGCAAAGCGGGGCATTATGGCCAGTGTAGCGGTCCCACGTGCCGTTGTTATCATAGCTCATCAGAAGGATATAGTCAACATGTCGGGCAATTCCGGAAAAATCGTATTCTCTGTTAACACCCACCGATGTGGTTAAGATCAGATCGTGACTGTGTAGCTCAGATGCCAATGCCGACAGCAGCAGTACGAAGTTGCTATGATCGGAGCTGCTTTCGGGAAATTCCCAATCAATATCCGCTCCATTGAAACCATACTGTATACAGAAGCCACGCACATTGACTGCAAAGCTCTTTCGAAGGATCGAGTCGGCTGCCACTTTTGCGTACACGGATTTATCACAATTGGCACCACCAAACGACACAAGAGTCTTCAGCCTAGGATTTCTCTTACGCAAGTCGTTAAAGTTTTCCATAGCATTCTTCTCGTTGTCATCCTTTCGGATGAGCGTTCCATCGTCTTTAGGCTCCACAAACGCCTAGATAAGATGGGTGCACAGGTCCGGGTTTAGGTCCTCCACGGTGCATCTTCCCTTTCCGCTGCGATAGGTGGCCCATCCACCGTAGAATCCAAAGACAGGTTTGCTCGTCATATTTTGAAGTTATAAAGAGAATGAAGACCACAAATGATCAGTAAGAGTAATGAGTAC ] [-] EMBL BX604521 [ CCAATGCCGACAGCAGCAGTACGAAGTTGCTATGATCGGAGCTGCTTTCGGGAAATTCCCAATCAATATCCGCTCCATTGAAGCCATACTGTATACAGAAGCCACGCACATTGACTGCAAAGCTCTTTCGAAGGATCGAGTCGGCTGCCACTTTTGCGTACACGGATTTATCACAATTGGCACCACCAAACGACACAAGAGTCTTCAGCCTAGGATTTCTCTTACGCAAGTCGTTAAAGTTTTCCATAGCATTCTTCTCGTTGTCATCCTTTCGGATGAGCGTTCCATCGTCTTTAGGCTCCACAAACGCCTAGATAAGATGGGTGCACAGGTCCGGGTTTAGGTCCTCCACGGTGCATCTTCCCTTTCCGCTGCGATAGGTGGC ] [-] EMBL BM616024 [ ccaAATGCCGACAGCAGCAGTACGAAGTTGCTATGATCGGAGCTGCTTTCGGGAAATTCCCAATCAATATCCGCTCCATTGAAACCATACCGCATACAGAAGCCACGCACATTTACTGCAAAGCTCTTTCGAAGGATCGAGTCGGCTGCCACTTTTGCGTACACAGATTTATCACAATTGGCACCACCAAACGACACAAGAGTCTTCAGCCTAGGATTTCTCTTACGCAAGTCGTTAAAGTTTTCCATAGCATTCTTCTCGTTGTCATCCTTTCGGATGAGCGTTCCATCGTCTTTAGGCTCCACAAACGCGTAGATAAGATGGGTGCACAGGTCCGGGTTTAGGTCTTCCACGGTGCATCTTCCCTTTCCGCTGCGATAGGTGGCCCATCCACCGTAGAATCCAAAGACAGGTTTGCTCGTCATATTTTGACGTTATAAAGAGAATGAAGACCACAAATGTTCAGTAA AGTAATGAGTACGAGTGCTTTGACTCCTCAACTGATACTGACTACGTTCGTCGACGCTGATTGTTCGTTCTAGTAAGACACGTAATCCAGGGAATAAATACCACATATGTTCAGTAAAACAACTAGTACGAGCTCTTTGCGGACGCGTGGGCGG] [-] EMBL AL696355 [ tcGCTGCCACTTTTGCGTACACGGATTTATCACAATTGGCACCACCAAACGACACAAGAGTCTTCAGCNTAGGATTTCTCTTACGCAAGTCGTTAAAGTTTTCCATAGCATTCTTCTCGTTGTCATCCTTTCGGATGAGCGTTCCATCGTCTTTAGGCTCCACAAACGCCTAGATAAGATGGGTGCACAGGTCC GGTTTAGGTCCTCCACGGTGCATCTTCCCTTTCCGCTGCGATAGGTGGCCCATCCACCGTAGAATCCAAAGACAGGTTTGCTCGTCATATTTTGAAGTTATAAAGAGAATGAAGACCACAAATGTTCAGTAA AGTAATGAGTACGAGTGCTTTGACTCCTCAACTGATACTGAGTACGTTCGTCGACGGTAATTGTTCGTTCTAGTAAGACACGTAATCTAGGGAATAAATACCACATATGTTCAGTAAAACAACTAGTTNCACCTCTgcgatc ] consensusID : consensus_7398#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 666 fasta sequence [GGCCAGTGTAGCAGTCCCACGTGCCGTTGTAATCGTAGCTCATCAGGAGGATATAGTCAACATGTCGGGCAATTCCGGATACATCGTACTCTTTGTTAACACCCACCGATGTGGTTAAGATCAGGTCGTGACTGTGTAGCTCAGATGCCAATGCCGACAGCAGCAGTACGAAGTTGCTATGATCGGAGCTGCTTTCGGGAAATTCCCAATCAATATCCGCTCCATTGAAACCATACCGTATACAGAAGCCACGCACATTTACTGCAAAGCTCTTTCGAAGGATCGAGTCGGCTGCCACTTTTGCGTACGCAGATTTATCACAATTGGCACCACCAAACGACACAAGAGTCTTCAGCCTAGGATTTCTCTTACGCAAGTCGTTAAAGCTGTCCATAACATTCTTCTCGTTGTCATCCTTTCGGATGAGCGTTCCATCGTCTTTAGGCTCCACAAACGCGTAGATAAGATGGGTGCACAGGTCCGGGTTTAGGTCTTCCACGGTGCATCTTCCCTTTCCGCTGCGATAGGTGGCCCATCCACCGTAGAATCCAAAGACAGGTTTGCTCGTCATATTTTGACGTTATAAAGAGAATGAAGACCACAAATGTTCAATAAAGTAATGAGTACGAGTGCTTTGACCGGACGCGTGGGCGGACGCGTGGGCGG] [-] EMBL BM589524 [GGCCAGTGTAGCAGTCCCACGTGCCGTTGTAATCGTAGCTCATCAGGAGGATATAGTCAACATGTCGGGCAATTCCGGATACATCGTACTCTTTGTTAACACCCACCGATGTGGTTAAGATCAGGTCGTGACTGTGTAGCTCAGATGCCAATGCCGACAGCAGCAGTACGAAGTTGCTATGATCGGAGCTGCTTTCGGGAAATTCCCAATCAATATCCGCTCCATTGAAACCATACCGTATACAGAAGCCACGCACATTTACTGCAAAGCTCTTTCGAAGGATCGAGTCGGCTGCCACTTTTGCGTACGCAGATTTATCACAATTGGCACCACCAAACGACACAAGAGTCTTCAGCCTAGGATTTCTCTTACGCAAGTCGTTAAAGCTGTCCATAACATTCTTCTCGTTGTCATCCTTTCGGATGAGCGTTCCATCGTCTTTAGGCTCCACAAACGCGTAGATAAGATGGGTGCACAGGTCCGGGTTTAGGTCTTCCACGGTGCATCTTCCCTTTCCGCTGCGATAGGTGGCCCATCCACCGTAGAATCCAAAGACAGGTTTGCTCGTCATATTTTGACGTTATAAAGAGAATGAAGACCACAAATGTTCAATAAAGTAATGAGTACGAGTGCTTTGACCGGACGCGTGGGCGGACGCGTGGGCGG] [-] EMBL BM625521 [ GTGCCGTTGTAATCATAGCTCATCAGAAGGATATAGTCAACATGTCGGGCAATTCCGGATACATCGTACTCTCTGTTAACACCCACCGATGTAGTTAAGATCAGGTCGTGACTGTGTAGCTCAGATGCCAATGCCGACAGCAGCAGTACGAAGTTGCTATGATCGGAGCTGCTTTCGGGAAATTCCCAATCAATATCCGCTCCATTGAAACCATACCGCATACAGAAGCCACGCACATTTACTGCAAAGCTCTTTCGAAGGATCGAGTCGGCTGCCACTTTTGCGTACACAGATTTATCACAATTGGCACCACCAAACGACACAAGAGTCTTCAGCCTAGGATTTCTCTTACGCAAGTCGTTAAAGTTTTCCATAGCATTCTTCTCGTTGTCATCCTTTCGGATGAGCGTTCCATCGTCTTTAGGCTCCACAAACGCGTAGATAAGATGGGTGCACAGGTCCGGGTTTAGGTCTTCCACGGTGCATCTTCCCTTTCCGCTGCGATAGGTGGCCCATCCACCGTAGAATCCAAAGACAGGTTTGCTCGTCATATTTTGACGTTATAAAGAGAATGAAGACCACAAATGTTCAGTAAAGTAATGAGTACGAGTGCTTTGACCGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7398#0 CACAGTTTCAATGATACAAGTTTGCATTTATTTGACTAATCGAAATATCTTTCCGACACG 60 consensus_7398#1 ------------------------------------------------------------ consensus_7398#0 ATGACATACAAGTTTTACCTGGCTTTATGCTAAAGTCACATTTCATTGGAATATTTTGCG 120 consensus_7398#1 ------------------------------------------------------------ consensus_7398#0 AATTACGCCAAAGTCCTTGACATGTTCGTGCGTGTATCTGCATCTCCCATACTACTTACA 180 consensus_7398#1 ------------------------------------------------------------ consensus_7398#0 ATAAAACACATTTATAATATTCCAAACATGTTGGTTCTACTGGGTTCAAACATTTAACTA 240 consensus_7398#1 ------------------------------------------------------------ consensus_7398#0 CCGTATCGCAGCAGCGTGAATTTATCCTCCTGGAACTCATCCTGGTCGATCGACCAGATC 300 consensus_7398#1 ------------------------------------------------------------ consensus_7398#0 ATTGCTCCGCCAAGACCTTCGCTGTTGATGAATTCACATTTCTTTTGAATACTTTGCGGA 360 consensus_7398#1 ------------------------------------------------------------ consensus_7398#0 TTATCGTAGCTAACCCACTGATCGCCGCTAACCGCATAAGGAACGTGCTGCTCGCTATCC 420 consensus_7398#1 ------------------------------------------------------------ consensus_7398#0 CACATACGTTGTTCAAACATGTTCTTTACCTCATAGTAGGCTACAATGCCTGCTTCATCT 480 consensus_7398#1 ------------------------------------------------------------ consensus_7398#0 GTATATGGTCCCTTGCGACCTGGACCGCTGGTGGGTCGCCTTGTTCCCTCAGTACTGGTG 540 consensus_7398#1 ------------------------------------------------------------ consensus_7398#0 GAGGTCAGTGTGAACGTACGTCCATTTTCGGCTAAGCGCGACGATCAGTTTCGACTTTGG 600 consensus_7398#1 ------------------------------------------------------------ consensus_7398#0 GGCACCTCCACCTATCCAATCGCCGACACTAGCCTTAACGTTCAGTCTTCTCTGATAGTC 660 consensus_7398#1 ------------------------------------------------------------ consensus_7398#0 GGTTTCTACCGTACCCCAGCAAAGCGGGGCATTATGGCCAGTGTAGC-GTCCCACTTGCC 719 consensus_7398#1 -----------------------------------GGCCAGTGTAGCAGTCCCACGTGCC 25 ************ ******* **** consensus_7398#0 GTTGTAATCATAGCTCATCAGAAGGATATAGTCAACATGTCGGGCAATTCCGGATACATC 779 consensus_7398#1 GTTGTAATCGTAGCTCATCAGGAGGATATAGTCAACATGTCGGGCAATTCCGGATACATC 85 ********* *********** ************************************** consensus_7398#0 GTATTCTCTGTTAACACCCACCGATGTGGTTAAGATCAGATCGTGACTTTTTAGCTCAGA 839 consensus_7398#1 GTACTCTTTGTTAACACCCACCGATGTGGTTAAGATCAGGTCGTGACTGTGTAGCTCAGA 145 *** *** ******************************* ******** * ********* consensus_7398#0 TGCCAATGCCGACAGCAGCAGTACGAAGTTGCTATGATCGGAGCTGCTTTCGGGAAATTC 899 consensus_7398#1 TGCCAATGCCGACAGCAGCAGTACGAAGTTGCTATGATCGGAGCTGCTTTCGGGAAATTC 205 ************************************************************ consensus_7398#0 CCAATCAATATCCGCTCCATTGAAACCATACTGTATACAGAAGCCACGCACATTGACTGC 959 consensus_7398#1 CCAATCAATATCCGCTCCATTGAAACCATACCGTATACAGAAGCCACGCACATTTACTGC 265 ******************************* ********************** ***** consensus_7398#0 AAAGCTCTTTCGAAGGATCGAGTCGGCTGCCACTTTTGCGTACACGGATTTATCACAATT 1019 consensus_7398#1 AAAGCTCTTTCGAAGGATCGAGTCGGCTGCCACTTTTGCGTACGCAGATTTATCACAATT 325 ******************************************* * ************** consensus_7398#0 GGCACCACCAAACGACACAAGAGTCTTCAGCCTAGGATTTCTCTTACGCAAGTCGTTAAA 1079 consensus_7398#1 GGCACCACCAAACGACACAAGAGTCTTCAGCCTAGGATTTCTCTTACGCAAGTCGTTAAA 385 ************************************************************ consensus_7398#0 GTTTTCCATAGCATTCTTCTCGTTGTCATCCTTTCGGATGAGCGTTCCATCGTCTTTAGG 1139 consensus_7398#1 GCTGTCCATAACATTCTTCTCGTTGTCATCCTTTCGGATGAGCGTTCCATCGTCTTTAGG 445 * * ****** ************************************************* consensus_7398#0 CTCCACAAACGCCTAGATAAGATGGGTGCACAGGTCCGGGTTTAGGTCCTCCACGGTGCA 1199 consensus_7398#1 CTCCACAAACGCGTAGATAAGATGGGTGCACAGGTCCGGGTTTAGGTCTTCCACGGTGCA 505 ************ *********************************** *********** consensus_7398#0 TCTTCCCTTTCCGCTGCGATAGGTGGCCCATCCACCGTAGAATCCAAAGACAGGTTTGCT 1259 consensus_7398#1 TCTTCCCTTTCCGCTGCGATAGGTGGCCCATCCACCGTAGAATCCAAAGACAGGTTTGCT 565 ************************************************************ consensus_7398#0 CGTCATATTTTGAAGTTATAAAGAGAATGAAGACCACAAATGTTCAGTAAAGTAATGAGT 1319 consensus_7398#1 CGTCATATTTTGACGTTATAAAGAGAATGAAGACCACAAATGTTCAATAAAGTAATGAGT 625 ************* ******************************** ************* consensus_7398#0 ACGAGTGCTTTGACTCCTCAACTGATACTGACTACGTTCGTCGACGCTGATTGTTCGTTC 1379 consensus_7398#1 ACGAGTGCTTTGACCGGACGCGTGG-GCGGAC-GCGTGGGCGG----------------- 666 ************** * ** * *** *** * * consensus_7398#0 TAGTAAGACACGTAATCCAGGGAATAAATACCACATATGTTCAGTAAAACAACTAGTACG 1439 consensus_7398#1 ------------------------------------------------------------ consensus_7398#0 AGCTCTTTGCGGACGCGTGGGCGG 1463 consensus_7398#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||