These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 975 fasta sequence [TTCAGCGGCAGGACGGGAAACGCAAAAGCATCAGCAACTCGTTCTCCAACATCTTCCGGCGGCCCGGCTCCGTGGGATCGAGCAATAGTAACGGTTTAAACCACTCACCGAAAGTACGACGTAGATGGGTGGCGCGCGCGCGAAAGAACAACGATTTACAATTAAATTAACCGAACGATACTAAGCGAACGGCAGCGCACTACTAAGTAAACACTCCCCCTATTCCCCCATCTTCCCCCATCTAACCAAGAAAAAAGCTTGTGATTTAATTAAGGCATAATAAGCGTGTGTAGATGTGTTTTGTTTTTTAGCAATAACTAGTAGCTGTGAATATGATATACTGTTTTTCTTATATTAGAAAAAAACAGTTCATAGGTAGGGGAGGGGATCGTTTGTAAAACAAACGAGTCAAGAAAGGAAAGAGAAGGAAGAAATAGGAAGATAGTAGAAAAGCAAAATAGTGGAGAAGGAAAATTTGTCTTTTCTAAATGTAGGGCAACCGCTTTAATTTAACAAAAAAGTAATTTAATCGCGCGAATTTACCTGTCTGCTGCTTTTTTTTAAAGAATAATTCGCCAATTTTTAAATCCCCCTTTGTTCTGTCCCCATTGGTGGTAAACTTTCCGTCGAAAAGACGAACCCAAAATGATATTTAAACGCACTCTTTTTTATCGGGAATATTTTTTCGAACATTTTACGAACAAATTACGCAACACAACACATAAATGTCCAAAACTAATCTTTTACAAGTACCATTATTCGTTGCGAATGCGGAATTCGCAATATTGATAGGGGCGCGCCCATTATTACCGTTTAGTGTAACAAGTAAATGCTATCCTAACGAACAAGCGAACAAGGCCAAACAAAGAGAAACTATTGCAACCTGTTGTTGTAACTGTACTAATATACTGTATAGGGTAATATAAAATGGGGGTAACCGTTAATATATACATCTAGACACTGGAAGTAGATGTA] [+] EMBL BX624160 [TTCAGCGGCAGGACGGGAAACGCAAAAGCATCAGCAACTCGTTCTCCAACATCTTCCGGCGGCCCGGCTCCGTGGGATCGAGCAATAGTAACGGTTTAAACCACTCACCGAAAGTACGACGTAGATGGGTGGCGCGCGCGCGAAAGAACAACGATTTACAATTAAATTAACCGAACGATACTAAGCGAACGGCAGCGCACTACTAAGTAAACACTCCCCCTATTCCCCCATCTTCCCCCATCTAACCAAGAAAAAAGCTTGTGATTTAATTAAGGCATAATAAGCGTGTGTAGATGTGTTTTGTTTTTTAGCAATAACTAGTAGCTGTGAATATGATATACTGTTTTTCTTATATTAGAAAAAAACAGTTCATAGGTAGGGGAGGGGATCGTTTGTAAAACAAACGAGTCAAGAAAGGAAAGAGAAGGAAGAAATAGGAAGATAGTAGAAAAGCAAAATAGTGGAGAAGGAAAATTTGTCTTTTCTAAATGTAGGGCAACCGCTTTAATTTAACAAAAAAGTAATTTAATCGCGCGAATTTACCTGTCTGCTGCTTTTTTTTAAAGAATAATTCGCCAATTTTTAAATCCCCCTTTGTTCTGTCCCCAT ] [+] EMBL BX629108 [ GCGCGCGAAAGAACAACGATTTACAATTAAATTAACCGAACGATACTAAGCGAACGGCAGCGCACTACTAAGTAAACACTCCCCCTATTCCCCCATCTTCCCCCATCTAACCAAGAAAAAAGCTTGTGATTTAATTAAGGCATAATAAGCGTGTGTAGATGTGTTTTGTTTTTTAGCAATAACTAGTAGCTGTGAATATGATATACTGTTTTTCTTATATTAGAAAAAAACAGTTCATAGGTAGGGGAGGGGATCGTTTGTAAAACAAACGAGTCAAGAAAGGAAAGAGAAGGAAGAAATAGGAAGATAGTAGAAAAGCAAAATAGTGGAGAAGGAAAATTTGTCTTTTCTAAATGTAGGGCAACCGCTTTAATTTAACAAAAAAGTAATTTAATCGCGCGAATTTACCTGTCTGCTGCTTTTTTTTAAAGAATAATTCGCCAATTTTTAAATCCCCCTTTGTTCTGTCCCCATTGGTGGTAAACTTTCCGTCGAAAAGACGAACCCAAAATGATATTTAAACGCACTCTTTTTTATCGGGAATATTTTTTCGAACATTTTACGAACAAATTACGCAACACAACACATAAATGTCCAAAACTAATCTTTTACAAGTACCATTATTCGTTGCGAATGCGGAATTCGCAATATTGATAGGGGCGCG ] [+] EMBL BX617968 [ GAAAAAAACAGTTCATAGGTAGGGGAGGGGATCGTTTGTAAAACAAACGAGTCAAGAAAGGAAAGAGAAGGAAGAAATAGGAAGATAGTAGAAAAGCAAAATAGTGGAGAAGGAAAATTTGTCTTTTCTAAATGTAGGGCAACCGCTTTAATTTAACAAAAAAGTAATTTAATCGCGCGAATTTACCTGTCTGCTGCTTTTTTTTAAAGAATAATTCGCCAATTTTTAAATCCCCCTTTGTTCTGTCCCCATTGGTGGTAAACTTTCCGTCGAAAAGACGAACCCAAAATGATATTTAAACGCACTCTTTTTTATCGGGAATATTTTTTCGAACATTTTACGAACAAATTACGCAACACAACACATAAATGTCCAAAACTAATCTTTTACAAGTACCATTATTCGTTGCGAATGCGGAATTCGCAATATTGATAGGGGCGCGCCCATTATTACCGTTTAGTGTAACAAGTAAATGCTATCCTAACGAACAAGCGAACAAGGCCAAACAAAGAGAAACTATTGCAACCTGTTGTTGTAACTGTACTAATATACTGTATAGGGTAATATAAAATGGGGGTAACCGTTAATATATACATCTAGACACTGGAAGTAGATGTA] [+] EMBL BX609199 [ AAGGAAAGAGAAGGAAGAAATAGGAAGATAGTAGAAAAGCAAAATAGTGGAGAAGGAAAATTTGTCTTTTCTAAATGTAGGGCAACCGCTTTAATTTAACAAAAAAGTAATTTAATCGCGCGAATTTACCTGTCTGCTGCTTTTTTTTAAAGAATAATTCGCCAATTTTTAAATCCCCCTTTGTTCTGTCCCCATTGGTGGTAAACTTTCCGTCGAAAAGACGAACCCAAAATGATATTTAAACGCACTCTTTTTTATCGGGAATATTTTTTCGAACATTTTACGAACAAATTACGCAACACAACACATAAATGTCCAAAACTAATCTTTTACAAGTACCATTATTCGTTGCGAATGCGGAATTCGCAATATTGATAGGGGCGCGCCCAT TTACCGTTTAGTGT AGAAGTAAATGCTATCCTAACGAACAAGCGAACAATGCCAAACAAAGAGAAACTATTGCAACCTGTTGTTGTAACTGTACTAATATACTGTATAGGGTAATATAAAATGGGGGTAACC ] consensusID : consensus_7404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 777 fasta sequence [AGAATTCCCGAGGTTTAACAGTGCATTATGATGCTATCGCGCAGCAGGTTCACGCNTGCNGCANCCACCAGCCACCGGCCAACGAACTGCTAGCTGAAAACGAAAGTACGACGTAATGGGTGGCTGCGCGCGCGAAAGAACAACGATTTACAATTAAATTAACCGAACGATACTAAGCGAACGGCAGCGCACTACTAAGTAAACACTCCCCCTATTCCCCCATCTTCCCCCATCTAACCAAGAAAAAAGCTTGTGATTTAATTAAGGCATAATAAGCGTGTGTAGATGTGTTTGTTTTAGCAATAACTAGTAGCTGTGAATATGATATACTGTTATATTCTTATATTAGAAAAAAACAGTTCATAGGTACGGGGAGGGGATCGTTTGTAAAANAAACGAGTCAAGAAAGGAAAGAGAAGGAAGAAATAGGAAGATAGTAGAAAAGCAAAAATAGTGGAGAAGGAAANATTTGTCTTTTCTAAATGTAGGGCAACCGCCTNTTAATTTAACAAAAAAGTAATNTTACATCGAGCGAATTTACCTGGTCTGTGNTTATAACATAAACAAGAANTAAATATACGGAGCACCAAAATTTTCATTCAANAAACTCNCCCACCCATTTAAGGTTACATGGTTCCCCCCATATGGGGCTGGTAAACACATTNAACCGAGGAACNAAAGGAACGAAAAACCCACACAAATGGATTAATTAGTAAAACAGACACNTCCTAGTAANTGTAATCAGGGAGNAATAATAAGAATNNACGAACAATAGTA] [+] EMBL AL697349 [AGAATTCCCGAGGTTTAACAGTGCATTATGATGCTATCGCGCAGCAGGTTCACGCNTGCNGCANCCACCAGCCACCGGCCAACGAACTGCTAGCTGAAAACGAAAGTACGACGTAATGGGTGGCTGCGCGCGCGAAAGAACAACGATTTACAATTAAATTAACCGAACGATACTAAGCGAACGGCAGCGCACTACTAAGTAAACACTCCCCCTATTCCCCCATCTTCCCCCATCTAACCAAGAAAAAAGCTTGTGATTTAATTAAGGCATAATAAGCGTGTGTAGATGTGTTTGTTTTAGCAATAACTAGTAGCTGTGAATATGATATACTGTTATATTCTTATATTAGAAAAAAACAGTTCATAGGTACGGGGAGGGGATCGTTTGTAAAANAAACGAGTCAAGAAAGGAAAGAGAAGGAAGAAATAGGAAGATAGTAGAAAAGCAAAAATAGTGGAGAAGGAAANATTTGTCTTTTCTAAATGTAGGGCAACCGCCTNTTAATTTAACAAAAAAGTAATNTTACATCGAGCGAATTTACCTGGTCTGTGNTTATAACATAAACAAGAANTAAATATACGGAGCACCAAAATTTTCATTCAANAAACTCNCCCACCCATTTAAGGTTACATGGTTCCCCCCATATGGGGCTGGTAAACACATTNAACCGAGGAACNAAAGGAACGAAAAACCCACACAAATGGATTAATTAGTAAAACAGACACNTCCTAGTAANTGTAATCAGGGAGNAATAATAAGAATNNACGAACAATAGTA] consensusID : consensus_7404#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 549 fasta sequence [CCGCTACAGTGTGGGCAGCGAGCGACAGCTAAACCTTGCCATCGGGGCCGTACTGCTGGACGAGTGGTTGCGCGAGCTGTCCGCGGTAACGCAGGAACAGTGCATTATGATGCTATCGGAGCAGGTTCAGCAGCAGCAGCAGCAGCCACCGGCAAGAACTGCTAGCTGAAAACGAAAGTACGACGTAGATGGGTGGCGCGCGCGCGAAAGAACAACGATTTACAATTAAATTAACCGAACGATACTAAGCGAACGGCAGCGCACTACTAAGTAAACACTCCCCCTATTCCCCCATCTTCCCCCATCTAACCAAGAAAAAAGCTTGTGATTTAATTAAGGCATAATAAGCGTGTGTAGATGTGTTTTGTTTTTTAGCAATAACTAGTAGCTGTGAATATGATATACTGTTTTTCTTATATTAGAAAAAAACAGTTCATAGGTAGGGGGAGGGGATCGTTTGTAAAACAAACGAGTCAAGAAAAGGAAAGAGAAGGAAGAAATTAACGAACAAGCGAACAAGGCCAAACAAAGAGAAACTATTGCAACCTG] [+] EMBL BM586615 [CCGCTACAGTGTGGGCAGCGAGCGACAGCTAAACCTTGCCATCGGGGCCGTACTGCTGGACGAGTGGTTGCGCGAGCTGTCCGCGGTAACGCAGGAACAGTGCATTATGATGCTATCGGAGCAGGTTCAGCAGCAGCAGCAGCAGCCACCGGCAAGAACTGCTAGCTGAAAACGAAAGTACGACGTAGATGGGTGGCGCGCGCGCGAAAGAACAACGATTTACAATTAAATTAACCGAACGATACTAAGCGAACGGCAGCGCACTACTAAGTAAACACTCCCCCTATTCCCCCATCTTCCCCCATCTAACCAAGAAAAAAGCTTGTGATTTAATTAAGGCATAATAAGCGTGTGTAGATGTGTTTTGTTTTTTAGCAATAACTAGTAGCTGTGAATATGATATACTGTTTTTCTTATATTAGAAAAAAACAGTTCATAGGTAGGGGGAGGGGATCGTTTGTAAAACAAACGAGTCAAGAAAAGGAAAGAGAAGGAAGAAATTAACGAACAAGCGAACAAGGCCAAACAAAGAGAAACTATTGCAACCTG] [+] EMBL BX617957 [ CGAGCGACAGCGAAACCTTGCCATCGGGGCCGTACGGCTGGACGAGGGGTTGCGCGAGCTGTCCGCGGTAACGCAGGAACAGTGCATTATGATGCTATCGGAGCAGGGTCAGCAGCAGCAGCAGCAGCCACCGGCAAGAACGGCTAGCTGAAAACGAAAGTACGACGTAGAAGGGGGGCGCGCGCGCGAAAGAACAACGATTTACAATTAAACCAACCGAACGAAACTAAGCGAACGGCAGCGCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7404#1 ------------------------------------------------------------ consensus_7404#2 CCGCTACAGTGTGGGCAGCGAGCGACAGCTAAACCTTGCCATCGGGGCCGTACTGCTGGA 60 consensus_7404#0 -----------------------------------------------------------T 1 consensus_7404#1 -------------AGAATTCCCGAGGT------TTAACAGTGCATTATGATGCTATCGCG 41 consensus_7404#2 CGAGTGGTTGCGCGAGCTGTCCGCGGTAACGCAGGAACAGTGCATTATGATGCTATCGG- 119 consensus_7404#0 TCAGCGGCAGGACGGGAAACGCAAAAG----CATCAGCAACTCGTTCTCCAAC-ATCTTC 56 * * ** * ** * * *** consensus_7404#1 CAGCAGGTTCACGCNTGCNGCANCCACCAGCCACCGGCCAACGAACTGCTAGCTGAAAAC 101 consensus_7404#2 -AGCAGGTTCA-GCA-GCAGCAGC-AGCAGCCACCGGCAA--GAACTGCTAGCTGAAAAC 173 consensus_7404#0 CGGC-GGCCCGGCTCCGTGGGATCGAGCAATAGTAACGGTTTAAACCACTCAC------C 109 ** ** * * * * * * ** *** ** * * consensus_7404#1 GAAAGTACGACGTA-ATGGGTGGCTGCGCGCGCGAAAGAACAACGATTTACAATTAAATT 160 consensus_7404#2 GAAAGTACGACGTAGATGGGTGGC-GCGCGCGCGAAAGAACAACGATTTACAATTAAATT 232 consensus_7404#0 GAAAGTACGACGTAGATGGGTGGC-GCGCGCGCGAAAGAACAACGATTTACAATTAAATT 168 ************** ********* *********************************** consensus_7404#1 AACCGAACGATACTAAGCGAACGGCAGCGCACTACTAAGTAAACACTCCCCCTATTCCCC 220 consensus_7404#2 AACCGAACGATACTAAGCGAACGGCAGCGCACTACTAAGTAAACACTCCCCCTATTCCCC 292 consensus_7404#0 AACCGAACGATACTAAGCGAACGGCAGCGCACTACTAAGTAAACACTCCCCCTATTCCCC 228 ************************************************************ consensus_7404#1 CATCTTCCCCCATCTAACCAAGAAAAAAGCTTGTGATTTAATTAAGGCATAATAAGCGTG 280 consensus_7404#2 CATCTTCCCCCATCTAACCAAGAAAAAAGCTTGTGATTTAATTAAGGCATAATAAGCGTG 352 consensus_7404#0 CATCTTCCCCCATCTAACCAAGAAAAAAGCTTGTGATTTAATTAAGGCATAATAAGCGTG 288 ************************************************************ consensus_7404#1 TGTAGATGTGTT---TGTTTTAGCAATAACTAGTAGCTGTGAATATGATATACTGTTATA 337 consensus_7404#2 TGTAGATGTGTTTTGTTTTTTAGCAATAACTAGTAGCTGTGAATATGATATACTGTTTT- 411 consensus_7404#0 TGTAGATGTGTTTTGTTTTTTAGCAATAACTAGTAGCTGTGAATATGATATACTGTTTT- 347 ************ * **************************************** * consensus_7404#1 TTCTTATATTAGAAAAAAACAGTTCATAGGTACGGGGAGGGGATCGTTTGTAAAANAAAC 397 consensus_7404#2 -TCTTATATTAGAAAAAAACAGTTCATAGGTAGGGGGAGGGGATCGTTTGTAAAACAAAC 470 consensus_7404#0 -TCTTATATTAGAAAAAAACAGTTCATAGGTA-GGGGAGGGGATCGTTTGTAAAACAAAC 405 ******************************* ********************** **** consensus_7404#1 GAGTCAAGAAA-GGAAAGAGAAGGAAGAAATAGGAAGATAGTAGAAAAGCAAAAATAGTG 456 consensus_7404#2 GAGTCAAGAAAAGGAAAGAGAAGGAAGAAAT-------TAACGAACAAGCGAACAAGGCC 523 consensus_7404#0 GAGTCAAGAAA-GGAAAGAGAAGGAAGAAATAGGAAGATAGTAGAAAAGCAAA-ATAGTG 463 *********** ******************* ** * **** ** * * consensus_7404#1 GAG-AAGGAAANATTTGTCTTTTCTAAATGTAGGGCAACCGCCTNTTAATTTAACAAAAA 515 consensus_7404#2 AAACAAAGAGAAACTATTGCAACCTG---------------------------------- 549 consensus_7404#0 GAG--AAGGAAAATTTGTCTTTTCTAAATGTAGGGCAACCGC--TTTAATTTAACAAAAA 519 * * * * * * * ** consensus_7404#1 AGTAATNTTACATCGAGCGAATTTACCTGGTCTGTGNTTATAACATAAACAAGAANTAAA 575 consensus_7404#2 ------------------------------------------------------------ consensus_7404#0 AGTAATTTAA--TCGCGCGAATTTACCTG-TCTGCTGCTTTTTTTTAAAGAATAATTCGC 576 consensus_7404#1 TATACGGAGCACCAAAATTTTCATTCAANAAACTCNCCCACCCATTTAAGGTTACATGGT 635 consensus_7404#2 ------------------------------------------------------------ consensus_7404#0 CAATTTTTAAATCCCCCTTTGTTCTGTCCCCATTGGTGGTAAACTTTCCGTCGAAAAGAC 636 consensus_7404#1 TCCCCCCATATGGGGCTGGTAAACACATTNAACCGAGGAACNAAAGGAACGAAAAACCCA 695 consensus_7404#2 ------------------------------------------------------------ consensus_7404#0 GAACCCAAAATGATATTTAAACGCACTCTTTTTTATCGGGAATATTTTTTCGAACATTT- 695 consensus_7404#1 CACAAATGGATTAATTAGTAAAACAGACACNTCCTAGTAANTGTAATCAGGGAGNAATAA 755 consensus_7404#2 ------------------------------------------------------------ consensus_7404#0 TACGAACAAATTACGCAACACAACACATAAATGTCCAAAACTAATCTTTTACAAGTACCA 755 consensus_7404#1 TAAGAATNNACGAACAATAGTA-------------------------------------- 777 consensus_7404#2 ------------------------------------------------------------ consensus_7404#0 TTATTCGTTGCGAATGCGGAATTCGCAATATTGATAGGGGCGCGCCCATTATTACCGTTT 815 consensus_7404#1 ------------------------------------------------------------ consensus_7404#2 ------------------------------------------------------------ consensus_7404#0 AGTGTAACAAGTAAATGCTATCCTAACGAACAAGCGAACAAGGCCAAACAAAGAGAAACT 875 consensus_7404#1 ------------------------------------------------------------ consensus_7404#2 ------------------------------------------------------------ consensus_7404#0 ATTGCAACCTGTTGTTGTAACTGTACTAATATACTGTATAGGGTAATATAAAATGGGGGT 935 consensus_7404#1 ---------------------------------------- consensus_7404#2 ---------------------------------------- consensus_7404#0 AACCGTTAATATATACATCTAGACACTGGAAGTAGATGTA 975 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||