These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7408#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1904 fasta sequence [CCGCCCACGCGTCCGCGGGTGACGGTGTCAACGACGCGCCCGCCCTGAAGAAGGCCGAAATCGGTATCGCCATGGGTTCGGGTACCGCCGTCGCCAAGTCGGCCGCCGAGATGGTGCTGGCTGACGATAACTTCTCCTCCATCGTTGCCGCTGTTGAGGAAGGTCGTGCCATCTACAACAACATGAAGCAGTTCATCCGCTACCTGATCTCGTCCAACATTGGTGAGGTCGTGTCCATCTTCCTGACGGCCGCCCTGGGTCTGCCGGAAGCGCTCATCCCCGTCCAGCTGCTGTGGGTCAACCTGGTCACTGACGGTCTGCCAGCTACTGCCCTCGGCTTCAACCCACCGGATCTGGACATCATGACCAAGCCGCCGCGCAAGGCTGATGAAGGTTTGATCTCTGGCTGGTTGTTCTTCCGTTACATGGCCATTGGTGGATATGTCGGTTGCGCTACCGTTGGTGGTGCCGCCTGGTGGTTCATGTTCTCCGAGACTGGCCCGCAGCTGTCCTACTGGCAGCTGACTCACCATCTGTCCTGCCTGGGCGGTGGCGAGGAGTTCAAGGGTATTGACTGCAAGATCTTCAACGACCCGCACCCAATGACCATGGCTCTGTCCGTGCTGGTCACCATTGAGATGTTGAACGCCATGAACAGCTTGTCTGAGAACCAGTCCCTTGTCCAGATGCCGCCATGGTGCAACATTTGGCTGATTGCCTCCATGTGTCTGTCGTTCGCTCTCCACTTCGTCATCCTCTACGTTGACGTTCTTTCCACCGTTTTCCAAGTCACTCCACTAGACGGAAATGAGTGGATGACCGTCATGAAGTTCTCGCTGCCGGTCGTGCTGCTGGATGAGATCCTGAAGTTCGTCGCCAGAAGGATTTCGGACGTCAATCCAGATTTCCATTAAAGACAGTTTCAAAATAAATAAAAAATAAACCCAAAAAATTATAAATCAAACCACCACCACCAACCACCCACTCACATATAATAAACAGAACAGAAAAAAAACCTAAAAAACTCCCTCGCGTGTGTGTGTGTCATGATCATCCTGCCTCCCATGTGGACGGCGGTCTTCCAAGTCTTCCAAAGCGTGTGTGTGAGTGTGTGTTCGTTCCCAAAAATGCCCCATTTTGTCCCTTCTTTTCTCCGTCATTATGACGTGTCTCGTTATAATGAACCCCCGGGAATGCTTGCTTCGTCCTTTGTGGGTTGGAAAGGAAGTGTGAACGAAAGGAGGGGACCGGAACCTCAATGTCCCCAGCATCCATAGCCTACAACTTGAAAGAGAGAGAGAGACAGAGACAGAGAGAGAGAGAGAGAGAGACAGA---AGAGCCCCTCAATGCCCTTTTTTTAATGCCCTCTTTGGGATGACTACTGATCGCGTTGCATTCATCCTCCCGGGTGGGGGAACAAGTGACAAAGTGAGTCAGGAGGGAGGAGATAAAGAAAGCACAACAATGGAAAAAAGAGCCCCTCTGCTGATGGAAAGGCCCTCCCCTCGAGTGTCCTGGTGACCGGGTGTGATTGCTTGTTCCTCTTTGGAGTTTGATCTCTCTCTCTCTTTCTCTCTCTCTGGGCGGGTGATTGGCTACAATAGCTTTGGAAGAACTTGATCGCAACTTTCGGTGCGATATCCTGAGACACCCCCCATCCCTGTGATCATCCAGCTTTATTGTCGGCGGCCACACAACTTAAAAGCTCCCCGTTCTTACAATCCCCCGCAATAAACAACCACCACACGAGGGCGCGCGAGCGTGAGTGTGTCCCCCCTCAACCTTTGTGATTGCTTTTCTCTCATCAACTCGCTCAAACACTCCCCCCCCCCAACAAAACCAAACAACAACACCACGCCAAATGTGAAGAGAAATAAAATCGTGTGTATGTGTGTGTCTTATGT] [+] EMBL BM655890 [CCGCCCACGCGTCCGCGGGTGACGGTGTCAACGACGCGCCCGCCCTGAAGAAGGCCGAAATCGGTATCGCCATGGGTTCGGGTACCGCCGTCGCCAAGTCGGCCGCCGAGATGGTGCTGGCTGACGATAACTTCTCCTCCATCGTTGCCGCTGTTGAGGAAGGTCGTGCCATCTACAACAACATGAAGCAGTTCATCCGCTACCTGATCTCGTCCAACATTGGTGAGGTCGTGTCCATCTTCCTGACGGCCGCCCTGGGTCTGCCGGAAGCGCTCATCCCCGTCCAGCTGCTGTGGGTCAACCTGGTCACTGACGGTCTGCCAGCTACTGCCCTCGGCTTCAACCCACCGGATCTGGACATCATGACCAAGCCGCCGCGCAAGGCTGATGAAGGTTTGATCTCTGGCTGGTTGTTCTTCCGTTACATGGCCATTGGTGGATATGTCGGTTGCGCTACCGTTGGTGGTGCCGCCTGGTGGTTCATGTTCTCCGAGACTGGCCCGCAGCTGTCCTACTGGCAGCTGACTCACCATCTGTCCTGCCTGGGCGGTGGCGAGGAGTTCAAGGGTATTGACTGCAAGATCTTCAACGACCCGCACCCAATGACCATGGCTCTGTCCGTGCTGGTCACCATTGAGATGTTGAACGCCATGAACAGCTTGTCTGAGAACCAGTCCCTTGTCCAGATGCCGCCATGGTGCAACA ] [+] EMBL BM618402 [ ccgGATCTCTGGCTGGTTGTTCTTCCGTTACATGGCCATTGGTGGATATGTCGGTTGCGCTACCGTTGGTGGTGCCGCCTGGTGGTTCATGTTCTCCGAGACTGGCCCGCAGCTGTCCTACTGGCAGCTGACTCACCATCTGTCCTGCCTGGGCGGTGGCGAGGAGTTCAAGGGTATTGACTGCAAGATCTTCAACGACCCGCACCCAATGACCATGGCTCTGTCCGTGCTGGTCACCATTGAGATGTTGAACGCCATGAACAGCTTGTCTGAGAACCAGTCCCTTGTCCAGATGCCGCCATGGTGCAACATTTGGCTGATTGCCTCCATGTGTCTGTCGTTCGCTCTCCACTTCGTCATCCTCTACGTTGACGTTCTTTCCACCGTTTTCCAAGTCACTCCACTAGACGGAAATGAGTGGATGACCGTCATGAAGTTCTCGCTGCCGGTCGTGCTGCTGGATGAGATCCTGAAGTTCGTCGCCAGAAGGATTTCGGACGTCAATCCAGATTTCCATTAAAGACAGTTTCAAAATAAATAAAAAATAAACCCAAAAAATTATAAATCAAACCACCACCACCAACCACCCACTCACATATAATAAACAGAACAGAAAAAAAACCTAAAAAACTCCCTCGCGTGTGTGTGTGTCATGATCATCCTGCCTCCCATGTGGACGGCGG ] [+] EMBL BM638010 [ ccGGGTATTGACTGCAAGATCTTCAACGATCCGCACCCAATGACCATGGCTCTGTCCGTGCTGGTCACCATTGAGATGTTGAACGCCATGAACAGCTTGTCTGAGAACCAGTCCCTTGTCCAGATGCCGCCATGGTGCAACATTTGGCTGATTGCCTCCATGTGTCTGTCGTTTGCTCTCCACTTCGTCATCCTCTACGTTGACGTTCTTTCCACCGTTTTCCAAGTCACTCCACTGGACGGAAATGAGTGGATGACCGTCATGAAGTTCTCGCTGCCGGTCGTGCTGCTGGATGAGATCCTGAAGTTCGTCGCCAGAAGGATTTCGGACGTCAATCCAGATTTCCATTAAAGACAGTTTCAAAATAAATAAAAAATAAACCC ] [+] EMBL BM617842 [ ccgCAATGACCATGGCTCTGTCCGTGCTGGTCACCATTGAGATGTTGAACGCCATGAACAGCTTGTCTGAGAACCAGTCCCTTGTCCAGATGCCGCCATGGTGCAACATTTGGCTGATTGCCTCCATGTGTCTGTCGTTCGCTCTCCACTTCGTCATCCTCTACGTTGACGTTCTTTCCACCGTTTTCCAAGTCACTCCACTAGACGGAAATGAGTGGATGACCGTCATGAAGTTCTCGCTGCCGGTCGTGCTGCTGGATGAGATCCTGAAGTTCGTCGCCAGAAGGATTTCGGACGTCAATCCAGATTTCCATTAAAGACAGTTTCAAAATAAATAAAAAATAAACCCAAAAAATTATAAATCAAACCACCACCACCAACCACCCACTCACATATAATAAACAGAACAGAAAAAAAACCTAAAAAACTCCCTCGCGTGTGTGTGTGTCATGATCATCCTGCCTCCCATGTGGACGGCGGTCTTCCAAGTCTTCCAAAGCGTGTGTGTGAGTGTGTGTTCGTTCCCAAAAATGCCCCATTTTGTCCCTTCTTTTCTCCGTCATTATGACGTGTCTCGTTATAATGAACCCCCGGGAATGCTTGCTTCGTCCTTTGTGGGTTGGAAAGGAAGTGTGAACGAAAGGAGGGGACCGGAACCTCAATGTCCCCAGCATCCATAGCCTACAACTTGAAAGAGAGAGAGAGACAGAGACAGAGAGAGAGAGAGAGAGAGACAGA AGAGCCCCTCAATGCCCTTTTTTTAATGCCCTCTTTGGGATGACTACTG ] [+] EMBL BM647333 [ ATTATAAATCAAACCACCACCACCAACCACCCACTCACATATAATAAACAGAACAGAAAAAAAACCTAAAAAACTCCCTCGCGTGTGTGTGTGTCATGATCATCCTGCCTCCCATGTGGACGGCGGTCTTCCAAGTCTTCCAAAGCGTGTGTGTGAGTGTGTGTTCGTTCCCAAAAATGCCCCATTTTGTCCCTTCTTTTCTCCGTCATTATGACGTGTCTCGTTATAATGAACCCCCGGGAATGCTTGCTTCGTCCTTTGTGGGTTGGAAAGGAAGTGTGAACGAAAGGA GGGACCGGACCCTCAATGTCCCCAGCATCCATAGCCTACAACTTGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCCT AATG CTTTTTTTAATGTCCTCTTTGGGATGACTACTGATCGCGTTGCATTCATCCTCCCGGGTGGGGGAACAAGTGACAAAGTGAGTCAGGAGGGAGGAGATAAAGAAAGCACAACAATGGAAAAAAGAGCCCCTCTGCTGATGGAAAGGCCCTCCCCTCGAGTGTCCTGGTGACCGGGTGTGATTGCTTGTTCCTCTTTGGAGTTTGATCTCTCTCTCTCTTTCTCTCTCTCTGGGCGGGTGATTGGCTACAATAGCTTTGGAAGAACTTGATCGCAACTTTCGGTGCGATATCC ] [+] EMBL BM652441 [ ccGGCTACAATAGCTTTGGAAGAACTTGATCGCAACTTTCGGTGCGATATCCTGAGACACCCCCCATCCCTGTGATCATCCAGCTTTATTGTCGGCGGCCACACAACTTAAAAGCTCCCCGTTCTTACAATCCCCCGCAATAAACAACCACCACACGAGGGCGCGCGAGCGTGAGTGTGTCCCCCCTCAACCTTTGTGATTGCTTTTCTCTCATCAACTCGCTCAAACACTCCCCCCCCCCAACAAAACCAAACAACAACACCACGCCAAATGTGAAGAGAAATAAAATCGTGTGTATGTGTGTGTCTTATGT] consensusID : consensus_7408#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 72 fasta sequence [TGGGCAGCATCTGCGCATAACTCCACGACAATCGATGATGGTCCTCGTTTTTCCCACCTGTGGCTTACTGGT] [+] EMBL AL935023 [TGGGCAGCATCTGCGCATAACTCCACGACAATCGATGATGGTCCTCGTTTTTCCCACCTGTGGCTTACTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7408#0 CCGCCCACGCGTCCGCGGGTGACGGTGTCAACGACGCGCCCGCCCTGAAGAAGGCCGAAA 60 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 TCGGTATCGCCATGGGTTCGGGTACCGCCGTCGCCAAGTCGGCCGCCGAGATGGTGCTGG 120 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 CTGACGATAACTTCTCCTCCATCGTTGCCGCTGTTGAGGAAGGTCGTGCCATCTACAACA 180 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 ACATGAAGCAGTTCATCCGCTACCTGATCTCGTCCAACATTGGTGAGGTCGTGTCCATCT 240 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 TCCTGACGGCCGCCCTGGGTCTGCCGGAAGCGCTCATCCCCGTCCAGCTGCTGTGGGTCA 300 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 ACCTGGTCACTGACGGTCTGCCAGCTACTGCCCTCGGCTTCAACCCACCGGATCTGGACA 360 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 TCATGACCAAGCCGCCGCGCAAGGCTGATGAAGGTTTGATCTCTGGCTGGTTGTTCTTCC 420 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 GTTACATGGCCATTGGTGGATATGTCGGTTGCGCTACCGTTGGTGGTGCCGCCTGGTGGT 480 consensus_7408#1 ---------------------------------------TGGGCAGCATCTGCGCATAAC 21 * ** * * * * consensus_7408#0 TC-ATGTTCTCCGAGACTGGCCCGCAGCTGTCCTACTGGCAGCTGACTCACCATCTGTCC 539 consensus_7408#1 TCCACGACAATCGATGATGGTCCTCGTTTTTCCCACCTGTGGCTTACTGGT--------- 72 ** * * *** *** ** * * *** ** * *** *** consensus_7408#0 TGCCTGGGCGGTGGCGAGGAGTTCAAGGGTATTGACTGCAAGATCTTCAACGACCCGCAC 599 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 CCAATGACCATGGCTCTGTCCGTGCTGGTCACCATTGAGATGTTGAACGCCATGAACAGC 659 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 TTGTCTGAGAACCAGTCCCTTGTCCAGATGCCGCCATGGTGCAACATTTGGCTGATTGCC 719 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 TCCATGTGTCTGTCGTTCGCTCTCCACTTCGTCATCCTCTACGTTGACGTTCTTTCCACC 779 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 GTTTTCCAAGTCACTCCACTAGACGGAAATGAGTGGATGACCGTCATGAAGTTCTCGCTG 839 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 CCGGTCGTGCTGCTGGATGAGATCCTGAAGTTCGTCGCCAGAAGGATTTCGGACGTCAAT 899 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 CCAGATTTCCATTAAAGACAGTTTCAAAATAAATAAAAAATAAACCCAAAAAATTATAAA 959 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 TCAAACCACCACCACCAACCACCCACTCACATATAATAAACAGAACAGAAAAAAAACCTA 1019 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 AAAAACTCCCTCGCGTGTGTGTGTGTCATGATCATCCTGCCTCCCATGTGGACGGCGGTC 1079 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 TTCCAAGTCTTCCAAAGCGTGTGTGTGAGTGTGTGTTCGTTCCCAAAAATGCCCCATTTT 1139 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 GTCCCTTCTTTTCTCCGTCATTATGACGTGTCTCGTTATAATGAACCCCCGGGAATGCTT 1199 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 GCTTCGTCCTTTGTGGGTTGGAAAGGAAGTGTGAACGAAAGGAGGGGACCGGAACCTCAA 1259 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 TGTCCCCAGCATCCATAGCCTACAACTTGAAAGAGAGAGAGAGACAGAGACAGAGAGAGA 1319 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 GAGAGAGAGAGACAGAAGAGCCCCTCAATGCCCTTTTTTTAATGCCCTCTTTGGGATGAC 1379 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 TACTGATCGCGTTGCATTCATCCTCCCGGGTGGGGGAACAAGTGACAAAGTGAGTCAGGA 1439 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 GGGAGGAGATAAAGAAAGCACAACAATGGAAAAAAGAGCCCCTCTGCTGATGGAAAGGCC 1499 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 CTCCCCTCGAGTGTCCTGGTGACCGGGTGTGATTGCTTGTTCCTCTTTGGAGTTTGATCT 1559 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 CTCTCTCTCTTTCTCTCTCTCTGGGCGGGTGATTGGCTACAATAGCTTTGGAAGAACTTG 1619 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 ATCGCAACTTTCGGTGCGATATCCTGAGACACCCCCCATCCCTGTGATCATCCAGCTTTA 1679 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 TTGTCGGCGGCCACACAACTTAAAAGCTCCCCGTTCTTACAATCCCCCGCAATAAACAAC 1739 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 CACCACACGAGGGCGCGCGAGCGTGAGTGTGTCCCCCCTCAACCTTTGTGATTGCTTTTC 1799 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 TCTCATCAACTCGCTCAAACACTCCCCCCCCCCAACAAAACCAAACAACAACACCACGCC 1859 consensus_7408#1 ------------------------------------------------------------ consensus_7408#0 AAATGTGAAGAGAAATAAAATCGTGTGTATGTGTGTGTCTTATGT 1904 consensus_7408#1 --------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||