These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7411#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 790 fasta sequence [CCGCGGACG-GTGAAGCTTTCGGTAGTGTCCGGTAGTCAGTCCATAGCGAAAGCGTGTCAAATTATCACATGATGCTGTTTGGAGGTGTTAAAGTGCTCCGTGTATCGGGTCCTCCGTTGTTCTTTGTTTTATTGTGGATGGTACATAGTGTTGTTGGGCTTGATCTCAACGCAAACTGTGTAACTCCGTTGGGAGAGTCAGGAAAGTGTATTCTGTTCCGAGAGTGCCAACCACTGATCACCATCTACAACAAACCGATAAACACTCACGATGATACACTGCTACTAACGCAAAGCCGGTGCGGTATGCTGCAGCGAAAAACGCTGGTATGCTGCCCCGTGACCAGCCAGGCCAGGTCTTCCCTACCCGAACCGCCGGTTTGTGGCATTCATCTGGCCGATCGGGTGATTGGTGGGCAGCCAACGCAAATCGACGAGTTCCCATGGACGGCACTGATCGAGTTCCAGAAACCGGACGGTAGCTTTGGCTTCCACTGCGGAGGATCGTTGATCAATGACCGGTACATCGTGACAGCAGCCCAC-TGTATTAAATCCATTCCACGCGGCTGGAAGGTCCATCGGGTGCGTCTTGGTGAGTGGGATTTGACATCGGCAAACGATTGTCAGAATGAGTTCTGTTCGGATGCACCGATCGATCTGGACATTGAGCAGATTGTCGTCCACACTGGCTACGATACGAAGGATCAAAGCAATGCG-AACGATATCGCGCTAATACGCTTCACCCGGCCGGTAAACTACTCACAAACCGTGCGGCCTATCTGTTTGCCACT] [+] EMBL BM600615 [CCGCGGACGCGTG GGCTTTCGGTAGTGTCCGGTAGTCAGTCCATAGCGAAAGCGTGTCAAATTATCACATGATGCTGTTTGGAGGTGTTAAAGTGCTCCGTGTATCGGGTCCTCCGTTGTTCTTTGTTTTATTGTGGATGGTACATAGTGTTGTTGGGCTTGATCTCAACGCAAACTGTGTAACTCCGTTGGGAGAGTCAGGAAAGTGTATTCTGTTCCGAGAGTGCCAACCACTGATCACCATCTACAACAAACCGATAAACACTCACGATGATACACTGCTACTAACGCAAAGCCGGTGCGGTATGCTGCAGCGAAAAACGCTGGTATGCTGCCCCGTGACCAGCCAGGCCAGGTCTTCCCTACCCGAACCGCCGGTTTGTGGCATTCATCTGGCCGATCGGGTGATTGGTGGGCAGCCAACGCAAATCGACGAGTTCCCATGGACGGCACTGATCGAGTTCCAGAAACCGGACGGTAGCTT ] [+] EMBL BM587815 [ cc GTGAACCTTTCGGTAGTGTCCGGTAGTCAGTCCATAGCGAAAGCGTGTCAAATTATCACATGATGCTGTTTGGAGGTGTTAAAGTGCTCCGTGTATCGGGTCCTCCGTTGTTCTTTGTTTTATTGTGGATGGTACATAGTGTTGTTGGGCTTGATCTCAACGCAAACTGTGTAACTCCGTTGGGAGAGTCAGGAAAGTGTATTCTGTTCCGAGAGTGCCAACCACTGATCACCATCTACAACAAACCGATAAACACTCACGATGATACACTGCTACTAACGCAAAGCCGGTGCGGTATGCTGCAGCGAAAAACGCTGGTATGCTGCCCCGTGACCAGCCAGGCCAGGTCTTCCCTACCCGAACCGCCGGTTTGTGGCATTCATCTGGCCGATCGGGTGATTGGTGGGCAGCCAACGCAAATCGACGAGTTCCCATGGACGGCACTGATCGAGTTCCAGAAACCGGACGGTAGCTTTGGCTTCCACTGCGGAGGATCGTTGATCAATGACCGGTACATCGTGACAGCAGCCCAC TGTATTAAATCCATTCCACGCGGCTGGAAGGTCCATCGGGTGCGTCTTGGTGAGTGGGATTTGACATCGGCAAACGATTGTCAGAATGAGTTCTGTTCGGATGCACCGATCGATCTGGACATTGAGCAGATTGTCGTCCACACTGGCTACGATACGAAGGATCAAAGCAATGCGAAACGATATC ] [+] EMBL CNS09DVT [ gg tTGAA CTTTCGGTAGTG GTCGGTCCATAGCGGAAG GTGTCAAATTATCACATGATGCTGTTTGGAGGTGTTAAAGTGCTCCGTGTATCGGGTCCTCCGTTGTTCTTTGTTTTATTGTGGATGGTACATAGTGTTGTTGGGCTTGATCTCAACGCAAACTGTGTGACTCCGTTGGGAGAGTCAGGAAAGTGTATTCTGTTCCGAGAGTGCCAACCACTGATCACCATCTACAATAAACCGATAAACACTCACGATGATACACTGCTACTAACGCAAAGCCGGTGTGGTATGCTGCAGCGAAAAACGCTGGTATGCTGCCCCGTGACCAGCCAGGCCAGGTCTTCCCTACCCGAACCGCCGGTTTGTGG AATCATCTGGCCGATCGGGTGATTGGTGGGCAGCCAACGCAAATCGACGAGTTCCCATGGACGGCACTGATCGAGTTCCAGAAACCGGACGGCAGCTTTGGCTTCCACTGCGGAGGATCGTTGATCAATGACCGGTACATCGTGACAGCAGCCCACTTGTATTAAATCCATTCCACGCGGCTGGAAGGTCCATCGGGTGCGTCTTGGTGAGTGGGATTTGACATCGGCAAACGATTGTCAGAATGAGTTCTGTTCGGATGCAC ] [+] EMBL CNS09BM8 [ CCGGTTTGTGGCATTCATCTGGCCGATCGGGTGATTGGTGGGCAGCCAACGCAAATCGACGAGTTCCCATGGACGGCACTTATCGAGTTCCAGAAACCGGACGGCAGCTTTGGCTTCCACTGCGGAGGATCGTTGATCAATGACCGGTACATCGTGACAGCAGCCCAC TGTATTAAATCCATTCCACGCGGCTGGAAGGTCCATCGGGTGCGTCTTGGTGAGTGGGATTTGACATCGGCAAACGATTGTCAGAATGAGTTCTGTTCGGATGCACCGATCGATCTGGACATTGAGCAGATTGTCGTCCACACTGGCTACGATACGAAGGATCAAAGCAATGCG AACGATATCGCGCTAATACGCTTCACCCGGCCGGTAAACTACTCACAAACCGTGCGGCCTATCTGTTTGCCACT] [-] EMBL CNS09BM9 [ GAGGATCGTTGATCAATGACCGGTACATCGTGACAGCAGCCCAC TGTATTAAATCCATTCCACGCGGCTGGAAGGTCCATCGGGTGCGTCTTGGTGAGTGGGATTTGACATCGGCAAACGATTGTCAGAATGAGTTCTGTTCGGATGCACCGATCGATCTGGACATTGAGCAGATTGTCGTCCACACTGGCTACGATACGAAGGATCAAAGCAATGCG AACGATATCGC ] consensusID : consensus_7411#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 688 fasta sequence [CCGGAGCGGTTGAATCCTCTGGTAGTGTTCAGTTCATAAGGAGAGCGTGTCAGTTTTTCACATGATGCTGTTTGGAGGTGTTCAAGTGTCCCGTGTACCGGGTGCTCCGTTGTTCTTTGTGTTATTGTGGATTGGACATGTTTTTGGGCTAGAACCAGTAAGTAGTACCCAGAACACATCTTCCCTACCCGAATCACCGCATTGTGGCATTCAGCTGGGTGATCGGGTGCTCAGTGGGCAGTCAACGCAAATCGACGAGTTCCCATGGACGGCACTGATCGAGTTCCAGAAACCGGACGGTAGTTTTGGCTTCCACTGCGGAGGATCGTTGATCAATGACCGGTACATCGTGACAGCAGCCCACTGTATTAAATCCATTCCACGCGATTGGAAGGTCCAACGGGTGCGTCTTGGTGAGTGGGATTTGACATCGGCAAACGATTGTCAGAATGAGTTCTGTTCGGATGCACCGATCGATCTGGACATTGAGCAGATTGTTGTCCATACCGGTTACGATACGAAGGATAAGAGCAATGCGAACGATATCGCGCTAATACGCTTCACCCGGCCGGTAAACTACTCACAAACCGTGCGGGCTATCTGTTTGCCCCTGAGCAGCTCACTTCGCAACCGTAGCCATGATGGGCTGATCAGCTACGAGGTTGGCTGGAGGAAAAACAATTCGGCA] [+] EMBL BM640768 [CCGGAGCGGTTGAATCCTCTGGTAGTGTTCAGTTCATAAGGAGAGCGTGTCAGTTTTTCACATGATGCTGTTTGGAGGTGTTCAAGTGTCCCGTGTACCGGGTGCTCCGTTGTTCTTTGTGTTATTGTGGATTGGACATGTTTTTGGGCTAGAACCAGTAAGTAGTACCCAGAACACATCTTCCCTACCCGAATCACCGCATTGTGGCATTCAGCTGGGTGATCGGGTGCTCAGTGGGCAGTCAACGCAAATCGACGAGTTCCCATGGACGGCACTGATCGAGTTCCAGAAACCGGACGGTAGTTTTGGCTTCCACTGCGGAGGATCGTTGATCAATGACCGGTACATCGTGACAGCAGCCCACTGTATTAAATCCATTCCACGCGATTGGAAGGTCCAACGGGTGCGTCTTGGTGAGTGGGATTTGACATCGGCAAACGATTGTCAGAATGAGTTCTGTTCGGATGCACCGATCGATCTGGACATTGAGCAGATTGTTGTCCATACCGGTTACGATACGAAGGATAAGAGCAATGCGAACGATATCGCGCTAATACGCTTCACCCGGCCGGTAAACTACTCACAAACCGTGCGGGCTATCTGTTTGCCCCTGAGCAGCTCACTTCGCAACCGTAGCCATGATGGGCTG ] [+] EMBL BM590080 [ ccgGTCAGTTTTTCACATGATGCTGTTTGGAGGTGTTCAAGTGTCCCGTGTATCGGGTGTTCCGTTGTTCTTTGTGTTATTGTGGATTGGACATGTTTTTGGGTTAGAACCAGTAAGTAGTACCCAGAACACATCTTCCCTACCCGAATCACCGCATTGTGGCATTCAGCTGGGTGATCGGGTGCTCAGCGGGCAGTCAACGCAAATCGACGAGTTCCCATGGACGGCACTGATCGAGTTCCAGAAACCGGACGGCAGCTTTGGCTTCCACTGCGGAGGATCGTTGATCAATGACCGGTACATCGTGACAGCAGCCCACTGTATTAAATCCATTCCACGCGATTGGAAGGTCCATCGGGTGCGTCTTGGTGAGTGGGATTTGACATCGGCAAACGATTGTCAGAATGAGTTCTGTTCGGATGCACCGATCGATCTGGACATTGAGCAGATTGTTGTCCATACCGGTTACGATACGAAGGATAAGAGCAATGCGAACGATATCGCGCTAATACGCTTCACCCGGTCGGTAAACTACTCACAAACCGTGCGGCCTATCTGTTTGTCCCTGAGCAGCTCACTTCGCAACCGTAGCCATGATGGGCTGATCAGCTACGAGGTTGGCTGGAGGAAAAACAATTCGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7411#0 CCGCGGACGGTGAAGCTTTCGGTAGTGTCCGGTAGTCAGTCCATAGCGAAAGCGTGTCAA 60 consensus_7411#1 ------------------------------------------------------------ consensus_7411#0 ATTATCACATGATGCTGTTTGGAGGTGTTAAAGTGCTCCGTGTATCGGGTCCTCCGTTGT 120 consensus_7411#1 ------------------------------------------------------------ consensus_7411#0 TCTTTGTTTTATTGTGGATGGTACATAGTGTTGTTGGGCTTGATCTCAACG--CAAACTG 178 consensus_7411#1 -------------------------------------------CCGGAGCGGTTGAATCC 17 * * ** ** consensus_7411#0 TGTAACTCCGTTGGGAGAGTCAGGAAAGTGTATTCTGTTCCGAGAGTGCCAACCACTGAT 238 consensus_7411#1 TCTGGTAGTGTTCAGTTCATAAGGAGAGCGTGT-CAGTTTTTCACATGATGCTGTTTGGA 76 * * *** * * **** ** ** * * *** ** ** consensus_7411#0 CACCATCTACAACAAACCGATAAACACTCACGATGATACACTGCTACTAACGCAAA-GCC 297 consensus_7411#1 G---GTGTTCAAGTGTCCCGTGTACCG----GGTGCTCCGTTGTTCTTTGTGTTATTGTG 129 * * *** ** * ** * ** * * ** * * * * * consensus_7411#0 GGTGCGGTATGCTGCAGCGAAAAACGCTGGTATGCTGCCCCGTGACCAGCCAGGCCAGGT 357 consensus_7411#1 GATTGGACATGTTTTTGGGCTAGA-ACCAGTAAGTAGT---------ACCCAGAACACAT 179 * * * *** * * * * * * *** * * * **** ** * consensus_7411#0 CTTCCCTACCCGAACCGCCGGTTTGTGGCATTCATCTGGCCGATCGGGTGATTGGTGGGC 417 consensus_7411#1 CTTCCCTACCCGAATCACCGCATTGTGGCATTCAGCTGGGTGATCGGGTGCTCAGTGGGC 239 ************** * *** ************ **** ********* * ****** consensus_7411#0 AGCCAACGCAAATCGACGAGTTCCCATGGACGGCACTGATCGAGTTCCAGAAACCGGACG 477 consensus_7411#1 AGTCAACGCAAATCGACGAGTTCCCATGGACGGCACTGATCGAGTTCCAGAAACCGGACG 299 ** ********************************************************* consensus_7411#0 GTAGCTTTGGCTTCCACTGCGGAGGATCGTTGATCAATGACCGGTACATCGTGACAGCAG 537 consensus_7411#1 GTAGTTTTGGCTTCCACTGCGGAGGATCGTTGATCAATGACCGGTACATCGTGACAGCAG 359 **** ******************************************************* consensus_7411#0 CCCACTGTATTAAATCCATTCCACGCGGCTGGAAGGTCCATCGGGTGCGTCTTGGTGAGT 597 consensus_7411#1 CCCACTGTATTAAATCCATTCCACGCGATTGGAAGGTCCAACGGGTGCGTCTTGGTGAGT 419 *************************** *********** ******************* consensus_7411#0 GGGATTTGACATCGGCAAACGATTGTCAGAATGAGTTCTGTTCGGATGCACCGATCGATC 657 consensus_7411#1 GGGATTTGACATCGGCAAACGATTGTCAGAATGAGTTCTGTTCGGATGCACCGATCGATC 479 ************************************************************ consensus_7411#0 TGGACATTGAGCAGATTGTCGTCCACACTGGCTACGATACGAAGGATCAAAGCAATGCGA 717 consensus_7411#1 TGGACATTGAGCAGATTGTTGTCCATACCGGTTACGATACGAAGGATAAGAGCAATGCGA 539 ******************* ***** ** ** *************** * ********** consensus_7411#0 ACGATATCGCGCTAATACGCTTCACCCGGCCGGTAAACTACTCACAAACCGTGCGGCCTA 777 consensus_7411#1 ACGATATCGCGCTAATACGCTTCACCCGGCCGGTAAACTACTCACAAACCGTGCGGGCTA 599 ******************************************************** *** consensus_7411#0 TCTGTTTGCCACT----------------------------------------------- 790 consensus_7411#1 TCTGTTTGCCCCTGAGCAGCTCACTTCGCAACCGTAGCCATGATGGGCTGATCAGCTACG 659 ********** ** consensus_7411#0 ----------------------------- consensus_7411#1 AGGTTGGCTGGAGGAAAAACAATTCGGCA 688 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||