These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 856 fasta sequence [TGAAGCCCTCTCCCTTTAACCCTCCCCCTTCTTACTGTGGAATTATCGGCCGAGCCGACAGAGAATCTTTTGGGGACGTTGGCGATCGCCCCAGCTTTAGATTAGCTAGTAGAAACGTACATCCCTCCCATCCTGTTCGTGAGGTAGACACGCACTAAAACCGCTAACCTTTCCGTTTAATTTGCCTTTGTTTTTTGTTCGGTAGTTTTAGAGAAATCTTTCGCGAAGGTGTTACACCACGTGCGCTTGCCCGTATAGCCCACAGAAATCCAGAGCTAGAAACGGTTAGGATCAAATCCTCTCTCCTTCTCCACAGCAGAGCAGGCAGACACTGTAGGTGTAGTACAGCCCTTAAGGGTTTAACCGGTCGGGCTGAGTCCCCTCCCATCCAAGCCGCC-AAAAAAGGGAAATGGAAAGCGTGAAACTCATAACAAAATCATACAAATGCGAACGCAAAG-AAAAAACAAACAGAAAGGAAGCTTTCATACGTTTCGTTCATGTCTCTGTTACGCTGGTAGCAGTAGTAGTAGTAATAGTCGTACGTACGAAGGGTAGGACAGGGTAAGAGTTAAAATTTAGCGAAACGATATAGTGAAAAAAGCGATAACAGAAGAAAAAAAAAATGAAAAAGTAACAAAACTAAAAGGTAAACCAATTTTTTGGAACTATTACTGTGAGTTATCTCTAGATCAGAGGAAGAGGGAGAGAAGAAGAAAACAAGTATTGTTAACGTATTTCTTTTTTATTATTATTATGACAAAATATACTTCGAAGCGAACAGAGGAACACACTAACACACCAGTTAATAATGAAATGTTTCTTTGCTTTGCTTTGCTTTCTAAATCTTTAAAAAAAA] [+] EMBL BX608355 [TGAAGCCCTCTCCCTTTAACCCTCCCCCTTCTTACTGTGGAATTATCGGCCGAGCCGACAGAGAATCTTTTGGGGACGTTGGCGATCGCCCCAGCTTTAGATTAGCTAGTAGAAACGTACATCCCTCCCATCCTGTTCGTGAGGTAGACACGCACTAAAACCGCTAACCTTTCCGTTTAATTTGCCTTTGTTTTTTGTTCGGTAGTTTTAGAGAAATCTTTCGCGAAGGTGTTACACCACGTGCGCTTGCCCGTATAGCCCACAGAAATCCAGAGCTAGAAACGGTTAGGATCAAATCCTCTCTCCTTCTCCACAGCAGAGCAGGCAGACACTGTAGGTGTAGTACAGCCCTTAAGGGTTTAACCGGTCGGGCTGAGTCCCCTCCCATCCAAGCCGCC AAAAAAGGGAAATGGAAAGCGTGAAACTCATAACAAAATCATACAAATGCGAACGCAAAG AAAAAACAAACAGAAAGGAAGCTTTCATACGTTTCGTTCATGTCTCTGTTACGCTGGTAGCAGTAGTAGTAGTAATAGTCGTACGTACGAAGGGTAGGACAGGGTAAGAGTTAAAATTTAGCGAAACGATATAGTGAAAAAAGCGATAACAGAAGAAAAAAAAAATGAAAAAGTAACAAAACTAAAAGGTAAACCAATTTTTTGGAACTATTACTGTGAGTTATCTCTAGATCAGAGGAAGAGGGAGAGAAGAAGAAAACAAGTATTGTTAACGTATTTCTTTTTTATTATTATTATGACAAAATATACTTCGAAGCGAACAGA ] [-] EMBL AGA280724 [ TAATTTGCCTTTGTTTTGTGTTCGGTAGTTTTGGAGAAATCTTTCGCGAAGGTGTTACACCACGTGCGCTTGCCCGTATAGCCCACAGAAATCCAGAGCTAGAAACGGTTAGGATCAAATCCTCTCTCCTTCTCCACAGCAGAGCAGGCAGACACTGTAGGTGTAGTACAGCCCTTAAGGGTTTAACCGGTCGGGCTGAGTCCCCTCCCATCCAAGCCGCC AAAAAAGGGAAATGGAAAGCGTGAAACTCATAACAAAATCATACAAATGCGAACGCAAAG AAAAAACAAACAGAAAGGAAGCTTTCATACGTTTCGTTCATGTCTCTGTTACGCTGGTAGCAGTAGTAGTAGTAATAGTCGTACGTACGAAGGGTAGGACAGGGTAAGAGTTAAAATTTAGCGAAACGATATAGTGAAAAAAGCGNTAACAGAAAAAA ] [+] EMBL AGA285052 [ TCGGTAGTTTTAGAGAAATCTTTCGCGAAGGTGTTACACCACGTGCGCTTGCCCGTATAGCCCACAGAAATCCAGAGCTAGAAACGGTTAGGATCAAATCCTCTCTCCTTCTCCACAGCAGAGCAGGCAGACACTGTAGGTGTAGTACAGCCCTTAAGGGTTTAACCGGTCGGGCTGAGTCCCCTCCCATCCAAGCCGCCAAAAAAAGGGAAATGGAAAGCGTGAAACTCATAACAAAATCATACAAATGCGAACGCAAAGAAAAAAACAAACAGAAAGGAAGCTTTCATACGTTTCGTTCATGTCTCTGTTACGCTGGTAGCAGTAGTAGTAGTAATAGTCGTACGTACGAAGGGTAGGACAGGGTAAGAGTTAAAATTTAGCGAAACGATATAGTGAAAAAAGCGATAACAGAAGAAAAAAAAAATGAAAAAGTAACAAAACTAAAAGGTAAACCAATTTTTTGGAACTATTACTGTGA ] [-] EMBL AGA283762 [ GCGTGAAACTCATAACAAAATCATACAAATGCGAACGCAAAGAAAAAAACAAACAGAAAGGAAGCTTTCATACGTTTCGTTCATGTCTCTGTTACGCTGGTAGCAGTAGTAGTAGTAATAGTCGTACGTACGAAGGGTAGGACAGGGTAAGAGTTAAAATTTAGCGAAACGATATAGTGAAAAAAGCGATAACAGAAGAAAAAAAAAATGAAAAAGTAACAAAACTAAAAGGTAAACCAATTTTTTGGAACTATTACTGTGAGTTATCTCTAGATCAGAGGAAGAGGGAGAGAAGAAGAAAACAAGTATTGTTAACGTATTTCTTTTTTATTATTATTATGACAAAATATACTTCGAAGCGAACAGAGGAACACACTAACACACCAGTTAATAATGAAATGTTTCTTTGCTTTGCTTTGCTTTCTAAATCTTTAAAAAAAA] consensusID : consensus_7412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 719 fasta sequence [GCATCGTGTAAAAATGTTAAAAACTCCCCGTGGAATGGGGGAGGGGCTGGAAGGAGCTCTGTTCGCGGCAACCAAAGGATAAAGGGATTAGGGGATAGGGGAATCGAAAAAGGGAAAGGAGAGGAGGCAGTACGAGAAGCGCCGTGATTGTAGATGTTAAGTTTAAATTATTTATACACGTCGAGTGGCGAACGAGCGACCAGTGGCGGCACAGTTGGCATTATAGGCATATAAGCAATCCGATACACGTTTAATAAGAATCTCACACGCAATTCAATGCCTGCATTGGGAGGCCAGGAAACTTTAGGATTAGGAGAATGGCCGGGGACCAGGGATACGGGGATCAGAATCAACCGGCACTCCTCGGTGTAAAGCCCCCGGAAGATCCGGAAGGTTTTTTTGTCTGGTGTGATCGTTCGATCGTTGCTCTCTGGTGCTCGTGTAAACCAAACCGATCGATCGGGACAGGGGTCGAATTGGGGTAACAATTAACGGTTTACGGTAAGCATATTTTAAACTGTCGGTTATTAACAACACTATTAATTCAACAAGTTCTACCAGCTGTGCAAGCCGAAAGGAGCAGCGAAAGAACAAAAACATGAAAAAAAAGCAAATAACAAACAAATCACAAGTAATTGATTTACACCCCCAAAAAAAGTACCCTTACACACGCATATTCGCATAAGAAATGGTGGAAGGATCGAACAGATAAGCAACAC] [+] EMBL BX607995 [GCATCGTGTAAAAATGTTAAAAACTCCCCGTGGAATGGGGGAGGGGCTGGAAGGAGCTCTGTTCGCGGCAACCAAAGGATAAAGGGATTAGGGGATAGGGGAATCGAAAAAGGGAAAGGAGAGGAGGCAGTACGAGAAGCGCCGTGATTGTAGATGTTAAGTTTAAATTATTTATACACGTCGAGTGGCGAACGAGCGACCAGTGGCGGCACAGTTGGCATTATAGGCATATAAGCAATCCGATACACGTTTAATAAGAATCTCACACGCAATTCAATGCCTGCATTGGGAGGCCAGGAAACTTTAGGATTAGGAGAATGGCCGGGGACCAGGGATACGGGGATCAGAATCAACCGGCACTCCTCGGTGTAAAGCCCCCGGAAGATCCGGAAGGTTTTTTTGTCTGGTGTGATCGTTCGATCGTTGCTCTCTGGTGCTCGTGTAAACCAAACCGATCGATCGGGACAG ] [+] EMBL BM641716 [ ccGGATAGGA GAGGCAGTACGAGAAGCGCCGTGATTGTAGATGTTAAGTTTAAATTATTTATACACGACGAGTGGCGAACGAGCGACCAGTGGCGGCACAGTTGGCATTATAGGCATATAAGCAATCCGGTACACGTTTAATAAGAATCTCACACGCAATTCAATGCCTGCATTGGGAGGCCAGGAAACTTTAGGATTAGGAGAATGGCCGGGGACCAGGGATACGGGGATCAGAATCAACCGGCACTCCTCGGCGTAAAGCCCCCGGAAGATCCGGAAGGTTTTTTTGTCTGGTGTGATCGTTCGATCGTTGCTCTCTGGTGCTCGTGTAAACCAAACCGATCGATCGGGACAGGGGTCGAATTGGGGTAACAATTAACGGTTTACGGTAAGCATATTTTAAACTGTCGGTTATTAACAACACTATTAATTCAACAAGTTCTACCAGCTGTGCAAGCCGAAAGGAGCAGCGAAAGAACAAAAACATGAAAAAAAAGCAAATAACAAACAAATCACAAGTAATTGATTTACACCCCCAAAAAAAGTACCCTTACACACGCATATTCGCATAAGAAATGGTGGAAGGATCGAACAGATAAGCAACAC] consensusID : consensus_7412#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 715 fasta sequence [TTGGGGACGTTGGCGATCGCCCCAGCTTTAGATTAGCTAGTAGAAACGTACATCCCTCCCATTCTGTTCGCGGCAACCAAAGGATAAAGGGATTAGGGGATAGGGGAATCGAAAAAGGGAAAGGAGAGGAGGCAGTACGAGAAGCGCCGTGATTGTAGATGTTAAGTTTAAATTATTTATACACGACGAGTGGCGAACGAGCGACCAGTGGCGGCACAGTTGGCATTATAGGCATATAAGCAATCCGATACACGTTTAATAAGAATCTCACACGCAATTCAATGCCTGCATTGGGAGGCCAGGAAACTTTAGGATTAGGAGAATGGCCGGGGACCAGGGATACGGGGATCAGAATCAACCGGCACTCCTCGGTGTAAAGCCCCCGGAAGATCCGGAAGGTTTTTTTGTCTGGTGTGATCGTTCGATCGTTGCTCTCTGGTGCTCGTGTAAACCAAACCGATCGATCGGGACAGGGGTCGAATTGGGGTAACAATTAACGGTTTACGGTAAGCATATTTTAAACTGTCGGTTATTAACAACACTATTAATTCAACAAGTTCTACCAGCTGTGCAAGCCGAAAGGAGCAGCGAAAGAACAAAAAAACATTAAAAAAGCAAATAACAAACAAATCACAAGTAATTGATTTACACCCCCCAAAAAAAGTACCCTTACACACGCATATTCGCATAAGAAATGGTGGAAGGATCGAACAGA] [+] EMBL BX616989 [TTGGGGACGTTGGCGATCGCCCCAGCTTTAGATTAGCTAGTAGAAACGTACATCCCTCCCATTCTGTTCGCGGCAACCAAAGGATAAAGGGATTAGGGGATAGGGGAATCGAAAAAGGGAAAGGAGAGGAGGCAGTACGAGAAGCGCCGTGATTGTAGATGTTAAGTTTAAATTATTTATACACGACGAGTGGCGAACGAGCGACCAGTGGCGGCACAGTTGGCATTATAGGCATATAAGCAATCCGATACACGTTTAATAAGAATCTCACACGCAATTCAATGCCTGCATTGGGAGGCCAGGAAACTTTAGGATTAGGAGAATGGCCGGGGACCAGGGATACGGGGATCAGAATCAACCGGCACTCCTCGGTGTAAAGCCCCCGGAAGATCCGGAAGGTTTTTTTGTCTGGTGTGATCGTTCGATCGTTGCTCTCTGGTGCTCGTGTAAACCAAACCGATCGATCGGGACAGGGGTCGAATTGGGGTAACAATTAACGGTTTACGGTAAGCATATTTTAAACTGTCGGTTATTAACAACACTATTAATTCAACAAGTTCTACCAGCTGTGCAAGCCGAAAGGAGCAGCGAAAGAACAAAAAAACATTAAAAAAGCAAATAACAAACAAATCACAAGTAATTGATTTACACCCCCCAAAAAAAGTACCCTTACACACGCATATTCGCATAAGAAATGGTGGAAGGATCGAACAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7412#1 ------------------------------------------------------------ consensus_7412#2 ------------------------------------------------------------ consensus_7412#0 TGAAGCCCTCTCCCTTTAACCCTCCCCCTTCTTACTGTGGAATTATCGGCCGAGCCGACA 60 consensus_7412#1 ------------GCATCGTGTAAAAATGTTAAAAACTCCCCGTGG--AATGGGGGAGGGG 46 consensus_7412#2 ---------TTGGGGACGTTGGCGATCGCCCCAGCTTTAGATTAGCTAGTAGAAACGTAC 51 consensus_7412#0 GAGAATCTTTTGGGGACGTTGGCGATCGCCCCAGCTTTAGATTAGCTAGTAGAAACGTAC 120 * *** * * * * * * * * * * consensus_7412#1 CTGGAAGGAGCTCTGTTCGCG--GCAACCAAAGGATAAAGGGATTAGGGGATAGGGGAAT 104 consensus_7412#2 ATCCCTCCCATTCTGTTCGCG--GCAACCAAAGGATAAAGGGATTAGGGGATAGGGGAAT 109 consensus_7412#0 ATCCCTCCCATCCTGTTCGTGAGGTAGACACGCACTAAAACCGCTAACCTTTCCGTTTAA 180 * ******* * * * ** **** ** * * * consensus_7412#1 CGAAAAAGGGAAAGGAGAGGAGGCAGTACGAGAAGCGCCGTGATTGTAGATGTTAAGTTT 164 consensus_7412#2 CGAAAAAGGGAAAGGAGAGGAGGCAGTACGAGAAGCGCCGTGATTGTAGATGTTAAGTTT 169 consensus_7412#0 TTTGCCTTTGTTTTTTGTTC-GGTAGTTTTAGAGAAATCTTTCGCGAAGGTGTTACACCA 239 * * ** *** *** * * * ** ***** consensus_7412#1 AAATTATTTATAC--ACGTCGAGTGGCGAACGAGCGACCAGTGGCGGCACAGTTGGCAT- 221 consensus_7412#2 AAATTATTTATAC--ACGACGAGTGGCGAACGAGCGACCAGTGGCGGCACAGTTGGCAT- 226 consensus_7412#0 CGTGCGCTTGCCCGTATAGCCCACAGAAATCCAGAG-CTAGAAACGGTTAGGATCAAATC 298 ** * * * * * * ** * * ** *** * * ** consensus_7412#1 -TATAGGCATATAAGCAATCCGATACACGTTTAATAAGAATCTCACACGCAATTCAATGC 280 consensus_7412#2 -TATAGGCATATAAGCAATCCGATACACGTTTAATAAGAATCTCACACGCAATTCAATGC 285 consensus_7412#0 CTCTCTCCTTCTCCACAGCAGAGCAGGCAGACACTGTAGGTGTAGTACAGCCCTTAAGGG 358 * * * * * ** * * * * * * ** * ** * consensus_7412#1 CTGCATTGGGAGGCCAGGAAACTTTAGGATTAGGAG----AATGGCCGGGGACCAGGGAT 336 consensus_7412#2 CTGCATTGGGAGGCCAGGAAACTTTAGGATTAGGAG----AATGGCCGGGGACCAGGGAT 341 consensus_7412#0 TTTAACCGGTCGGGCTGAGTCCCCTCCCATCCAAGCCGCCAAAAAAGGGAAATGGAAAGC 418 * * ** ** * * * * ** ** ** * consensus_7412#1 ACGGGGATCAGAATCAACCGGCACTCCTCGGTGTAAAGCCCCCGGAAGATCCGGAAGGTT 396 consensus_7412#2 ACGGGGATCAGAATCAACCGGCACTCCTCGGTGTAAAGCCCCCGGAAGATCCGGAAGGTT 401 consensus_7412#0 GTGAAACTCATAACAAAATCATACAAATGCGAACGCAAAGAAAAAACAAACAGAAAGGAA 478 * *** ** ** ** * * * * * * * **** consensus_7412#1 -TTTTTGTCTGGTGTGATCGTTCGATCGTTGCTCTCTGGTGCTCGTGTAAACCAAACCGA 455 consensus_7412#2 -TTTTTGTCTGGTGTGATCGTTCGATCGTTGCTCTCTGGTGCTCGTGTAAACCAAACCGA 460 consensus_7412#0 GCTTTCATACGTTTCGTTCATGTCTCTGTTACGCT--GGTAGCAGTAGTAGTAGTAATAG 536 *** * * * * ** * *** * ** *** ** * * consensus_7412#1 TCGATCGGGACAGGGGTCGAATTGGGGTAACAATTAACGGTTTACGGTAAGCATATTTTA 515 consensus_7412#2 TCGATCGGGACAGGGGTCGAATTGGGGTAACAATTAACGGTTTACGGTAAGCATATTTTA 520 consensus_7412#0 TCGTACGTACGAAGGGTAGGAC-AGGGTAAGAGTTAA-AATTTAGCGAAACGATATAGTG 594 *** ** * **** * * ****** * **** **** * ** **** * consensus_7412#1 AACTGTCGGTTATTAACAACACTATTAATTCAACAAGTT------CTACCAGCTGTGCAA 569 consensus_7412#2 AACTGTCGGTTATTAACAACACTATTAATTCAACAAGTT------CTACCAGCTGTGCAA 574 consensus_7412#0 AAAAAAGCGATAACAGAAGAAAAAAAAAATGAAAAAGTAACAAAACTAAAAGGTAAACCA 654 ** * ** * * * * ** * ** **** *** ** * * * consensus_7412#1 GCCGAAAGGAGCA------GCGAAAGAACAAAAACATGAAAAAAAAGCAAATAACAAACA 623 consensus_7412#2 GCCGAAAGGAGCA------GCGAAAGAACAAAAAAACATTAAAAAAGCAAATAACAAACA 628 consensus_7412#0 ATTTTTTGGAACTATTACTGTGAGTTATCTCTAGATCAGAGGAAGAGGGAGAGAAGAAGA 714 *** * * ** * * * ** ** * * ** * consensus_7412#1 AATCACAAGTAATTGATTTACACCCCC-AAAAAAAGTACCCTTACACACGCATATTCGCA 682 consensus_7412#2 AATCACAAGTAATTGATTTACACCCCCCAAAAAAAGTACCCTTACACACGCATATTCGCA 688 consensus_7412#0 AAACAAGTATTGTTAACGTATTTCTTT-TTTATTATTATTATGACAAA-ATATACTT-CG 771 ** ** * ** * ** * * * ** * *** * *** * * consensus_7412#1 TAAGAAATGGTGGAAGGATCGAACAGATAAGCAACAC----------------------- 719 consensus_7412#2 TAAGAAATGGTGGAAGGATCGAACAGA--------------------------------- 715 consensus_7412#0 AAGCGAACAGAGGAACACACTAACACACCAGTTAATAATGAAATGTTTCTTTGCTTTGCT 831 * ** * **** * **** * consensus_7412#1 ------------------------- consensus_7412#2 ------------------------- consensus_7412#0 TTGCTTTCTAAATCTTTAAAAAAAA 856 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||