These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7424#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 925 fasta sequence [CCGCGAACTCCAAGGAGTGCAAGGCTGAGCTGCGCGAGCACGAGAATACGGTAGAGTGCATTGCCTGGGCCCCGGAATCGGCAGCAGCGGCTATAAACGAGGCAGCCGGAGCAGACAACAAGAAGGGTGCACACCAAGGCCCATTCCTGGCATCGGGATCGAGAGACAAAACGATCAGGATTTGGGACGTCAGCTCCGGCTTGTGCCTGTTTACGCTGGCCGGCCACGACAATTGGGTGCGTGGTATCGTGTTTCACCCCGGCGGCAAGTACATGATTTCCGCTAGCGACGACAAAACGCTACGCATTTGGGATCTACGCAACAAGCGTTGCATGAAAACGCTCTACGCGCACTCACATTTCTGTACATCTTTGGATATGCATAAGTCCCATCCTTACGTCATATCCGGCAGCGTGGACACGACGGTTAAAGTTTGGGAGTGCCGC-TAAGTCAAATCCCCCGATCCGCCCCCTCTCCCGTACACGACGCCACCTGACCAACTAACCCCAACTCTACCCCAGGTTGGCTGGCAGCTTGTTACTTTGTGTGTGTGTGTATG-TGTGTGTGGGTCCAACGGGAGACTCATTGGCGC-TTTCTGTTTTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTGTGGGTCTGGAAGGATGCGTGGATT-GGC-AAAGCAGGA-GGA-CCCAAGG-ACCACAGTTATCCAGCATCGGCAAGCAGGCACCGTCATCACCACCATCATCAT---CATCATC---ATCGTGGATACGTTTTCATTGCGATG--------TGTGCGCATGGTTTGTGTTCAGTTTGTGTTGCCGTCCTCTGTTTAAGGTGGTGTAGAAAGTGGGTTTACAATGAGCGGAGGCAATGCAAGCAAAACTGTGAAAGATAGATGATACATGATAACAAGCGAGAGG] [+] EMBL BM647180 [CCGCGAACTCCAAGGAGTGCAAGGCTGAGCTGCGCGAGCACGAGAATACGGTAGAGTGCATTGCCTGGGCCCCGGAATCGGCAGCAGCGGCTATAAACGAGGCAGCCGGAGCAGACAACAAGAAGGGTGCACACCAAGGCCCATTCCTGGCATCGGGATCGAGAGACAAAACGATCAGGATTTGGGACGTCAGCTCCGGCTTGTGCCTGTTTACGCTGGCCGGCCACGACAATTGGGTGCGTGGTATCGTGTTTCACCCCGGCGGCAAGTACATGATTTCCGCTAGCGACGACAAAACGCTACGCATTTGGGATCTACGCAACAAGCGTTGCATGAAAACGCTCTACGCGCACTCACATTTCTGTACATCTTTGGATATGCATAAGTCCCATCCTTACGTCATATCCGGCAGCGTGGACACGACGGTTAAAGTTTGGGAGTGCCGCTTAAGTCAAATCCCCCGATCCGCCCCCTCTCCCGTACACGACGCCACCTGACCAACTAACCCCAACTCTACCCCAGGTTGGCTGGCAGCTTGTTACTTTGTGTGTGTGTGTATGATGTGTGTGGGTCCAACGGGAGACTCATTGGCGCTTTTCTGTTTTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTGTGGGTCTGGAAGGATGCGTGGATT GGC AAAGCAGGA GGA CCCAAGG ACC ] [+] EMBL BM618372 [ ccgACAAGAAGGGTGCACACCAAGGCCCATTCCTGGCATCGGGATCGAGAGACAAAACGATCAGGATTTGGGACGTCAGCTCCGGCTTGTGCCTGTTTACGCTGGCCGGCCACGACAATTGGGTGCGTGGTATCGTGTTTCACCCCGGCGGCAAGTACATGATTTCCGCTAGCGACGACAAAACGCTACGCATTTGGGATCTACGCAACAAGCGTTGCATGAAAACGCTCTACGCGCACTCACATTTCTGTACATCTTTGGATATGCATAAGTCCCATCCTTACGTCATATCCGGCAGCGTGGACACGACGGTTAAAGTTTGGGAGTGCCGC TAAGTCAAATCCCCCGATCCGCCCCCTCTCCCGTACACGACGCCACCTGACCAACTAACCCCAACTCTACCCCAGGTTGGCTGGCAGCTTGTTACTTTGTGTGTGTGTGTATG TGTGTGTGGGTCCAACGGGAGACTCATTGGCGC TTTCTGTTTTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTGTGGGTCTGGAAGGATGCGTGGATT GGC AAAGCAGGA GGA CCCAAGG ACCACAGTTATCCAGCATCGGCAAGCAGGCACCGTCATCACCACCACCATCAT ] [+] EMBL BM593929 [ ccgGGATTTGGGACGTCAGCTCCGGCTTGTGCCTGTTTACGCTGGCCGGCCACGACAATTGGGTGCGTGGTATCGTGTTTCACCCCGGCGGCAAGTACATGATTTCCGCTAGCGACGACAAAACGCTACGCATTTGGGATCTACGCAACAAGCGTTGCATGAAAACGCTCTACGCGCACTCACATTTCTGTACATCTTTGGATATGCATAAGTCCCATCCTTACGTCATATCCGGCAGCGTGGACACGACGGTTAAAGTTTGGGAGTGCCGC TAAGTCAAATCCCCCGATCCGCCCCCTCTCCCGTACACGACGCCACCTGACCAACTAACCCCAACTCTACCCCAGGTTGGCTGGCAGCTTGTTACTTTGTGTGTGTGTGTATG TGTGTGTGGGTCCAACGGGAGACTCATTGGCGC TTTCTGTTTTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTGTGGGCCTGGAAGGATCCGTGGATT GGC AAAGCAGGA GGA CCCACGG ACCACAGTTATCCAGCATCGGCAAGCAGGCACCGTCATCACCACCATCATCATCAGCATCATCCTTATCGTGGATACGTTTTCATTGCGATGTGTGCACCTGTGCGCATGGTTTGTGTTCAGTTTGTGTTGCCGTCCTCTGTTTAAGGTGGTGTAGAAAGGGGGT ] [+] EMBL BM639974 [ ccgTGTTTACGCTGGCCGGCCACGACAATTGGGTGCGTGGTATCGTGTTTCACCCCGGCGGCAAGTACATGATTTCCGCTAGCGACGACAAAACGCTACGCATTTGGGATCTACGCAACAAGCGTTGCATGAAAACGCTCTACGCGCACTCACATTTCTGTACATCTTTGGATATGCATAAGTCCCATCCTTACGTCATATCCGGCAGCGTGGACACGACGGTTAAAGTTTGGGAGTGCCGC TAAGTCAAATCCCCCGATCCGCCCCCTCTCCCGTACACGACGCCACCTGACCAACTAACCCCAACTCTACCCCAGGTTGGCTGGCAGCTTGTTACTTTGTGTGTGTGTGTATG TGTGTGTGGGTCCAACGGGAGACTCATTGGCGC TTTCTGTTTTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTGTGGGCCTGGAAGGATCCGTGGATT GGC AAAGCAGGA GGA CCCACGG ACCACAGTTATCCAGCATCGGCAAGCAGGCACCGTCATCACCACCATCATCATCAGCATCATCCTTATCGTGGATACGTTTTCATTGCGATGTGTGCACCTGTGCGCATGGTTTGTGTTCAGTTTGTGTTGCCGTCCTCTGTTTAAGGTGGTGTAGAAAGTGGGTTTACAATGAGCGGAGGCAATGCAAGCAAAACT ] [+] EMBL BM630619 [ ccgCGCTGGCCGGCCACGACAATTGGGTGCGTGGTATCGTGTTTCACCCCGGCGGCAAGTACATGATTTCCGCTAGCGACGACAAAACGCTACGCATTTGGGATCTACGCAACAAGCGTTGCATGAAAACGCTCTACGCGCACTCACATTTCTGTACATCTTTGGATATGCATAAGTCCCATCCTTACGTCATATCCGGCAGCGTGGACACGACGGTTAAAGTTTGGGAGTGCCGC TAAGTCAAATCCCCCGATCCGCCCCCTCTCCCGTACACGACGCCACCTGACCAACTAACCCCAACTCTACCCCAGGTTGGCTGGCAGCTTGTTACTTTGTGTGTGTGTGTATG TGTGTGTGGGTCCAACGGGAGACTCATTGGCGC TTTCTGTTTTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTGTGGGCCTGGAAGGATCCGTGGATTGGGCAAAAGCAGGAGGGACCCCACGGTACCACAGTTATCCAGCATCGGCAAGCAGGCACCGTCATCACCACCATC ] [+] EMBL BM608442 [ ccgGGGTGCGTGGTATCGTGTTTCACCCCGGCGGCAAGTACATGATTTCCGCTAGCGACGACAAAACGCTACGCATTTGGGATCTACGCAACAAGCGTTGCATGAAAACGCTCTACGCGCACTCACATTTCTGTACATCTTTGGATATGCATAAGTCCCATCCTTACGTCATATCCGGCAGCGTGGACACGACGGTTAAAGTTTGGGAGTGCCGC TAAGTCAAATCCCCCGATCCGCCCCCTCTCCCGTACACGACGCCACCTGACCAACTAACCCCAACTCTACCCCAGGTTGGCTGGCAGCTTGTTACTTTGTGTGTGTGTGTATG TGTGTGTGGGTCCAACGGGAGACTCATTGGCGC TTTCTGTTTTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTGTGGGTCTGGAAGGATGCGTGGATT GGC AAAGCAGGA GGA CCCAAGG ACCACAGTTATCCAGCATCGGCAAGCAGGCACCGTCATCACCACCACCATCAT CATCATC ATCGTGGATACGTTTTCATTGCGATG TGTGCGCATGGTTTGTGTTCAGTTTGTGTTGTCGTCCTCTGTTTAGGGTGGTGTAGCAAGTGGGTTTACAATGAGCGGAGGCAATGCAAGCAAAACTGTGAAAGATAGATGATACATGATAACAAGCGAGAGG] consensusID : consensus_7424#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence [CCGCCCACGCGTCCGCGGGAGACTCATTGGCGCTTTCTGTTTTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTGTGGGCCTGGAAGGATCCGTGGATTGGCAAAGCAGGAGGACCCACGGACCACAGTTATCCAGCATCGGCAAGCAGGCACCGTCATCACCACCATCATCATCAGCATCATCCTTATCGTGGATACGTTTTCATTGCGATGTGTGCACCTGTGCGCATGGTTTGTGTTCAGTTTGTGTTGCCGTCCTCTGTTTAGGGTGGTGTAGAAGGTGGGTTTACAATGAGCGGAGGCAATGCAAGCAAAACTGTGAAAGATAGATGATACATGATAACAAGCGAGAGGGAAAGAGGAGAAAGGGATGTTTTAGTTCAATATTAGTTTACGTTTTGTTCTATTTTACTCATATTGATCCAATGAATATTGTCAGTGGCGGTACGGATGTTTAGTAACATACACACACAAACTGTCGTTAGCCCAACCTTTAGCGCTGGTTCATGCGTGTTCCTTCGTGCTCCTCCTTCTTAGAGCCGCTGGCTGTTAAACTCTCCAGCAAACCGTTAGCTTTTTCTCTGGGGTTAGACAAACTGGTTAGAATTGTGAAAACGAGATCATGTTTGCAATTATTGCTAAATCAAAATGCTACACTAATAGAGTGGATACACCCAACAATTA] [+] EMBL BM636419 [CCGCCCACGCGTCCGCGGGAGACTCATTGGCGCTTTCTGTTTTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTGTGGGCCTGGAAGGATCCGTGGATTGGCAAAGCAGGAGGACCCACGGACCACAGTTATCCAGCATCGGCAAGCAGGCACCGTCATCACCACCATCATCATCAGCATCATCCTTATCGTGGATACGTTTTCATTGCGATGTGTGCACCTGTGCGCATGGTTTGTGTTCAGTTTGTGTTGCCGTCCTCTGTTTAGGGTGGTGTAGAAGGTGGGTTTACAATGAGCGGAGGCAATGCAAGCAAAACTGTGAAAGATAGATGATACATGATAACAAGCGAGAGGGAAAGAGGAGAAAGGGATGTTTTAGTTCAATATTAGTTTACGTTTTGTTCTATTTTACTCATATTGATCCAATGAATATTGTCAGTGGCGGTACGGATGTTTAGTAACATACACACACAAACTGTCGTTAGCCCAACCTTTAGCGCTGGTTCATGCGTGTTCCTTCGTGCTCCTCCTTCTTAGAGCCGCTGGCTGTTAAACTCTCCAGCAAACCGTTAGCTTTTTCTCTGGGGTTAGACAAACTGGTTAGAATTGTGAAAACGAGATCATGTTTGCAATTATTGCTAAATCAAAATGCTACACTAATAGAGTGGATACACCCAACAATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7424#0 CCGCGAACTCCAAGGAGTGCAAGGCTGAGCTGCGCGAGCACGAGAATACGGTAGAGTGCA 60 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 TTGCCTGGGCCCCGGAATCGGCAGCAGCGGCTATAAACGAGGCAGCCGGAGCAGACAACA 120 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 AGAAGGGTGCACACCAAGGCCCATTCCTGGCATCGGGATCGAGAGACAAAACGATCAGGA 180 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 TTTGGGACGTCAGCTCCGGCTTGTGCCTGTTTACGCTGGCCGGCCACGACAATTGGGTGC 240 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 GTGGTATCGTGTTTCACCCCGGCGGCAAGTACATGATTTCCGCTAGCGACGACAAAACGC 300 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 TACGCATTTGGGATCTACGCAACAAGCGTTGCATGAAAACGCTCTACGCGCACTCACATT 360 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 TCTGTACATCTTTGGATATGCATAAGTCCCATCCTTACGTCATATCCGGCAGCGTGGACA 420 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 CGACGGTTAAAGTTTGGGAGTGCCGCTAAGTCAAATCCCCCGATCCGCCCCCTCTCCCGT 480 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 ACACGACGCCACCTGACCAACTAACCCCAACTCTACCCCAGGTTGGCTGGCAGCTTGTTA 540 consensus_7424#1 ------------------------------------------------------------ consensus_7424#0 CTTTGTGTGTGTGTGTATGTGTGTGTGGGTCCAACGGGAGACTCATTGGCGCTTTCTGTT 600 consensus_7424#1 ------------------CCGCCCACGCGTCCG-CGGGAGACTCATTGGCGCTTTCTGTT 41 * * **** ************************** consensus_7424#0 TTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTG 660 consensus_7424#1 TTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTG 101 ************************************************************ consensus_7424#0 TGGGTCTGGAAGGATGCGTGGATTGGCAAAGCAGGAGGACCCAAGGACCACAGTTATCCA 720 consensus_7424#1 TGGGCCTGGAAGGATCCGTGGATTGGCAAAGCAGGAGGACCCACGGACCACAGTTATCCA 161 **** ********** *************************** **************** consensus_7424#0 GCATCGGCAAGCAGGCACCGTCATCACCACCATCATCATCATCATCATC------GTGGA 774 consensus_7424#1 GCATCGGCAAGCAGGCACCGTCATCACCACCATCATCATCAGCATCATCCTTATCGTGGA 221 ***************************************** ******* ***** consensus_7424#0 TACGTTTTCATTGCGATGTGTGC--------GCATGGTTTGTGTTCAGTTTGTGTTGCCG 826 consensus_7424#1 TACGTTTTCATTGCGATGTGTGCACCTGTGCGCATGGTTTGTGTTCAGTTTGTGTTGCCG 281 *********************** ***************************** consensus_7424#0 TCCTCTGTTTAAGGTGGTGTAGAAAGTGGGTTTACAATGAGCGGAGGCAATGCAAGCAAA 886 consensus_7424#1 TCCTCTGTTTAGGGTGGTGTAGAAGGTGGGTTTACAATGAGCGGAGGCAATGCAAGCAAA 341 *********** ************ *********************************** consensus_7424#0 ACTGTGAAAGATAGATGATACATGATAACAAGCGAGAGG--------------------- 925 consensus_7424#1 ACTGTGAAAGATAGATGATACATGATAACAAGCGAGAGGGAAAGAGGAGAAAGGGATGTT 401 *************************************** consensus_7424#0 ------------------------------------------------------------ consensus_7424#1 TTAGTTCAATATTAGTTTACGTTTTGTTCTATTTTACTCATATTGATCCAATGAATATTG 461 consensus_7424#0 ------------------------------------------------------------ consensus_7424#1 TCAGTGGCGGTACGGATGTTTAGTAACATACACACACAAACTGTCGTTAGCCCAACCTTT 521 consensus_7424#0 ------------------------------------------------------------ consensus_7424#1 AGCGCTGGTTCATGCGTGTTCCTTCGTGCTCCTCCTTCTTAGAGCCGCTGGCTGTTAAAC 581 consensus_7424#0 ------------------------------------------------------------ consensus_7424#1 TCTCCAGCAAACCGTTAGCTTTTTCTCTGGGGTTAGACAAACTGGTTAGAATTGTGAAAA 641 consensus_7424#0 ------------------------------------------------------------ consensus_7424#1 CGAGATCATGTTTGCAATTATTGCTAAATCAAAATGCTACACTAATAGAGTGGATACACC 701 consensus_7424#0 --------- consensus_7424#1 CAACAATTA 710 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||