These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1603 fasta sequence [CCGCTGGCGTAGTACACGTGGTGTGCGCAGCAAAACTTCCACTGACCAGTCCGCGACCGCTAGTAGCGTTTCTGTCTTTGCCGTTCCCTGTGCCTTCACCGCAGATAGTTGGCCGGATGTCCGATGTGTGTAATGTGCGCTGAGTGAAGAGGAAAAATACCCCGCAACCGTTTCGCTTACAGGCCGCTTTGCCGGTGTGTTTTTGTGCTGCAGATGCACCATCAGTGCAAGTCTGTCTAATGATCAAATCAGTGTACTGAAAGTAAGGCGTGTGGGTGTTTTGTTGAAAATTTAAAAAAAAATAGCAGTGAGAGTATGTGTTGAAGACCAGCCGTATCTAAATGTGTGCAGTGTGCGTCTAAACGAGGGTGGTGTGTAGGCATTTGGTGCAAGCTACAATTCCTGTATCGCAGATCTCGACGAAAGTGCATTTGGAGGTTTTTTTCGGAGGTAGCAATTGAGTTCTAAAACTTGCACAGTAGCGCACCACGAGTACGGGAGAGCTGGAGGGGAGCTAAAAGTGTACCATTCCACGTGGATGTGATTATTGATTTAAAGCAAAAAAGGGAAGCAATCACACGTGTCGGCAAGTGAGAGTCTATTTTCGTCCGATCAGCAAGAAGCCAGACGATTCTGTGGTAGTGTATGTGTGTCTGTGTTTGTGTGTGCAAGTTTGTTCATTTGTGTGGTTGCCGTACAGTGCCAGGAAGCGTTGTTCGTGGGAGAGTAAATAGCAGAAAATCAATCAAAAAGAGCCGCCAGTTTAGAGCGAGGAACATAGCCAGTGTCGCCATAGTTGGTGAAAAATCAGTGAAATTCCGGACCCACCTGTGAAGTCCTGTGCTGGACAGGAAGTTCCGGTTGGGTAGGCGTGAGCGAAAGTGAGATAGAGAGAAAAAGAGTCACTCAAAAGGCAGAAGGGAAGGCAACGCTGACCCAATCCTTTTTAGAGATCGACTCAACGTCCTCGAAAACCGTCTTCATGTATAAGTTCTTCGTGAATTCCAGTGTTAAGTACATAATCAAGTAGAAGCGACTGTTCAATTGCGCGAGAGGCTGTGTGTGTGTGAGAGAGAGTGTGTGCAACAGGAAGTGGAGTAAAGGTCAAATCAAAGGAAAAGCTCACCCTTGTGTGTACAGCAGAAAAGGCTCGTGCGAGACGCACGTGCTAGTTTTCCCTAGAGAGAAAGAGAGAACACTCTCCCACCCCAACTGGACACAGCTGCTTGTACCGGCCACGCAACACTTTCCATTTTTCTTCCATTTTCCATTCCGACCGTACCCTCCACAACGGATTTCATGTGTAAAGCGGCAGCGACCGGGAAGAATACGCTCCTGCTCGATAACAACAAACGTGTCCGTTCGTTTTTCCGCAAACCGCGCTACACGCACTTCTGCTCCGTCTGGTACATCATAGAGGGACGGTCCGGCACGAGGAAAACACCGCACGACCCGTTTGTCTGTATCGCTCGCACTACCACCCGGTCCAGCAGCATCCGTGAAAAGCCCGTAGAAGCTGACTCCGGCCACCACAGCCCTGTTTAGAACCTGAAGCGATTGCCTCCTAGCCCTCGATCAGCACTCGTTCAGTGTAGTTCAGGAT] [+] EMBL BM589688 [CCGCTGGCGTAGTACACGTGGTGTGCGCAGCAAAACTTCCACTGACCAGTCCGCGACCGCTAGTAGCGTTTCTGTCTTTGCCGTTCCCTGTGCCTTCACCGCAGATAGTTGGCCGGATGTCCGATGTGTGTAATGTGCGCTGAGTGAAGAGGAAAAATACCCCGCAACCGTTTCGCTTACAGGCCGCTTTGCCGGTGTGTTTTTGTGCTGCAGATGCACCATCAGTGCAAGTCTGTCTAATGATCAAATCAGTGTACTGAAAGTAAGGCGTGTGGGTGTTTTGTTGAAAATTTAAAAAAAAATAGCAGTGAGAGTATGTGTTGAAGACCAGCCGTATCTAAATGTGTGCAGTGTGCGTCTAAACGAGGGTGGTGTGTAGGCATTTGGTGCAAGCTACAATTCCTGTATCGCAGATCTCGACGAAAGTGCATTTGGAGGTTTTTTTCGGAGGTAGCAATTGAGTTCTAAAACTTGCACAGTAGCGCACCACGAGTACGGGAGAGCTGGAGGGGAGCTAAAAGTGTACCATTCCACGTGGATGTGATTATTGATTTAAAGCAAAAAAGGGAAGCAATCACACGTGTCGGCAAGTGAGAG ] [+] EMBL BX623225 [ CACTGACCAGTCCGCGACCGCTAGTAGCGTTTCTGTCTTTGCCGTTCCCTGTGCCTTCACCGCAGATAGTTGGCCGGATGTCCGATGTGTGTAATGTGCGCTGAGTGAAGAGGAAAAATACCCCGCAACCGTTTCGCTTACAGGCCGCTTTGCCGGTGTGTTTTTGTGCTGCAGATGCACCATCAGTGCAAGTCTGTCTAATGATCAAATCAGTGTACTGAAAGTAAGGCGTGTGGGTGTTTTGTTGAAAATTAAAAAAAAAATAGCAGTGAGAGTATGTGTTGAAGACCAGCCGTATCTAAATGTGTGCAGTGTGCGTCTAAACGAGGGTGGTGTGTAGGCATTTGGTGCAAGCTACAATTCCTGTATCGCAGATCTCGACGAAAGTGCATTTGGAGGTTTTTTTCGGAGGTAGCAATTGAGTTCTAAAACTTGCACAGTAGCGCACCACGAGTACGGGAGAGCTGGAGGGGAGCTAAAAGTGTACCATTCCATGTGGATGTGATTATTGATTTAAAGCAAAAAAGGGAAGCAATCACACGTGTCGGCAAGTGAGAGTCTATTTTCGTCCGATCAGCAAGAAGCCAGACGATTCTGTGGTAGTGTAT ] [+] EMBL BM610034 [ ccgGTTTTTGTGCTGCAGATGCACCATCAGTGCAAGTCTGTCTAATGATCAAATCAGTGTACTGAAAGTAAGGCGTGTGGGGGGTTTGTTGAAAATTTAAAAAAAAATAGCAGTGAGAGTATGTGTTGAAGACCAGCCGTATCTAAATGTGTGCAGTGTGCGTCTAAACGAGGGTGGTGTGTAGGCATTTGGTGCAAGCTACAATTCCTGTATCGCAGATCTCGACGAAAGTGCATTTGGAGGTTTTTTTCGGAGGTAGCAATTGAGTTCTAAAACTTGCACAGTAGCGCACCACGAGTACGGGAGAGCTGGAGGGGAGCTAAAAGTGTACCATTCCACGTGGATGTGATTATTGATTTAAAGCAAAAAAGGGAAGCAATCACACGTGTCGGCAAGTGAGAGTCTATTTTCGTCCGATCAGCAAGAAGCCAGACGATTCTGTGGTAGTGTATGTGTGTCTGTGTTTGTGTGTGCAAGTTTGTTCATTTGTGTGGTTGCCGTACAGTGCCAGGAAGCGTTGTTCGTGGGAGAGTAAATAGCAGAAAATCAATCAAAAAGAGCCGCCAGTTTAGAGCGAGGAACATAGCCAGTGTCGCCATAGTTGGTGAAAAATCAGTGAAA ] [+] EMBL BX629259 [ AACATAGCCAGTGTCGCCATAGTTGGTGAAAAATCAGTGAAATTCCGGACCCACCTGTGAAGTCCTGTGCTGGACAGGAAGTTCCGGTTGGGTAGGCGTGAGCGAAAGTGAGATAGAGAGAAAAAGAGTCACTCAAAAGGCAGAAGGGAAGGCAACGCTGACCCAATCCTTTTTAGAGATCGACTCAACGTCCTCGAAAACCGTCTTCATGTATAAGTTCTTCGTGAATTCCAGTGTTAAGTACATAATCAAGTAGAAGCGACTGTTCAATTGCGCGAGAGGCTGTGTGTGTGTGAGAGAGAGTGTGTGCAACAGGAAGTGGAGTAAAGGTCAAATCAAAGGAAAAGCTCACCCTTGTGTGTACAGCAGAAAAGGCTCGTGCGAGACGCACGTGCTAGTTTTCCCTAGAGAGAAAGAGAGAACACTCTCCCACCCCAACTGGACACAGCTGCTTGTACCGGCCACGCAACACTTTCCATTTTTCTTCCATTTTCCATTCCGACCGTACCCTCCACAACGGATTTCATGTGTAAAGCGGCAGCGACCGGGAAGAATACGCTCCTGCTCGATAACAACAAACGTGTCCGTTCGTTTTTCCGCAAACCGCGCTACACGCACTTCTGCTCCGTCTGGTACATCATAGAGGGACGGTCCGGCACGAGGAAAACACCGCACGACCCGTTTGTCTGTATCGCTCGCACTACCACCCGGTCCAGCAGCATCCGTGAAAAGCCCGTAGA ] [+] EMBL BX629151 [ CAGTGTCGCCATAGTTGGTGAAAAATCAGTGAAATTCCGGACCCACCTGTGAAGTCCTGTGCTGGACAGGAAGTTCCGGTTGGGTAGGCGTGAGCGAAAGTGAGATAGAGAGAAAAAGAGTCACTCAAAAGGCAGAAGGGAAGGCAACGCTGACCCAATCCTTTTTAGAGATCGACTCAACGTCCTCGAAAACCGTCTTCATGTATAAGTTCTTCGTGAATTCCAGTGTTAAGTACATAATCAAGTAGAAGCGACTGTTCAATTGCGCGAGAGGCTGTGTGTGTGTGAGAGAGAGTGTGTGCAACAGGAAGTGGAGTAAAGGTCAAATCAAAGGAAAAGCTCACCCTTGTGTGTACAGCAGAAAAGGCTCGTGCGAGACGCACGTGCTAGTTTTCCCTAGAGAGAAAGAGAGAACACTCTCCCACCCCAACTGGACACAGCTGCTTGTACCGGCCACGCAACACTTTCCATTTTTCTTCCATTTTCCATTCCGACCGTACCCTCCACAACGGATTTCATGTGTAAAGCGGCAGCGACCGGGAAGAATACGCTCCTGCTCGATAACAACAAACGTGTCCGTTCGTTTTTCCGCAAACCGCGCTACACGCACTTCTGCTCCGTCTGGTACATCATAGAGGGACGGTCCGGCACGAGGAAAACACCGCACGACCCGTTTGTCTGTATCGCTCGCACTACCACCCGGTCCAGCAGCATCCGTGAAAAGCCCGTAGA ] [+] EMBL BM610823 [ ccgGTGTGTGTGAGAGA GTGTGCAACAGGAAGTGGAGTAAAGGTCAAATCAAAGGAAAAGCTCACCCT TGTACAGCAGAAAAGGCTCGTGTGAGGCGCACGTGCTAGTTTTCCCTAGAGAGAAAGAGAGAACACTCTCCCACCCCAACTGGACACAGCTGCGTGTACC GCCACGCAACACTTTCCATTTTTCTTCCATTTTCCATTCCGACCGTACCCTCCACAACGGATTTCATGTGTAAAGCGGCAGCGACCGGGAAGAATACGCTCCTGCTCGATAACAACAAACGTGTCCGTTCGTTTTTCCGCAAACCGCGCTACACGCACTTCTGCTCCGTCTGGTACATCATAGAGGGACGGTCCGGCACGAGGAAAACACCGCACGACCCGTTTGTCTGTATCGCTCGCACTATCACCCGGTCCAGCAGCATCCGTG AAAGCCCGTAGAAGCTGACTCCGGCCACCACAGCCCTGTTTAGAACCTGAAGCGATTGCCTCCTAGCCCTCGATCAGCACTCGTTCAGTGTAGTTCAGGAT] consensusID : consensus_7432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 412 fasta sequence [GGCAGAATCNCCACGAGGTAATTGCGCGAGAGGCTGTGTGTCGTGTGAGAGAGAGTGTGTGCAACAGGAAGTGGAGTAAAGGTCAAATCAAAGGAAAAGCTCACCCTTGTGTGTACAGCAGAAAAGGCTCGTGCGAGACGCACGTGCTAGTTTTCCCTAGAGAGAAAGAGAGAACACTCTCCCANCCCAACTGGACACAGCTGCTTGTACCGGGCCACGCAACACTTTCCATTTTTCTTCCATTTTCCATTCCGACCGTACCCTCCAGCAACGGATTTCACTGTGTATAAGCGGCGAGGCGAACCGGGGAAGAATACGCTCCTGGGCGTCGGATAACGAGACACATACGGTGGTCCGCTGTACGGNATTTTCCGGNGAAACCGCGGCTTACAACGGCGACTTCTGNCGTCCG] [+] EMBL BX467701 [GGCAGAATCNCCACGAGGTAATTGCGCGAGAGGCTGTGTGTCGTGTGAGAGAGAGTGTGTGCAACAGGAAGTGGAGTAAAGGTCAAATCAAAGGAAAAGCTCACCCTTGTGTGTACAGCAGAAAAGGCTCGTGCGAGACGCACGTGCTAGTTTTCCCTAGAGAGAAAGAGAGAACACTCTCCCANCCCAACTGGACACAGCTGCTTGTACCGGGCCACGCAACACTTTCCATTTTTCTTCCATTTTCCATTCCGACCGTACCCTCCAGCAACGGATTTCACTGTGTATAAGCGGCGAGGCGAACCGGGGAAGAATACGCTCCTGGGCGTCGGATAACGAGACACATACGGTGGTCCGCTGTACGGNATTTTCCGGNGAAACCGCGGCTTACAACGGCGACTTCTGNCGTCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7432#0 CCGCTGGCGTAGTACACGTGGTGTGCGCAGCAAAACTTCCACTGACCAGTCCGCGACCGC 60 consensus_7432#1 ------------------------------------------------------------ consensus_7432#0 TAGTAGCGTTTCTGTCTTTGCCGTTCCCTGTGCCTTCACCGCAGATAGTTGGCCGGATGT 120 consensus_7432#1 ------------------------------------------------------------ consensus_7432#0 CCGATGTGTGTAATGTGCGCTGAGTGAAGAGGAAAAATACCCCGCAACCGTTTCGCTTAC 180 consensus_7432#1 ------------------------------------------------------------ consensus_7432#0 AGGCCGCTTTGCCGGTGTGTTTTTGTGCTGCAGATGCACCATCAGTGCAAGTCTGTCTAA 240 consensus_7432#1 ------------------------------------------------------------ consensus_7432#0 TGATCAAATCAGTGTACTGAAAGTAAGGCGTGTGGGTGTTTTGTTGAAAATTTAAAAAAA 300 consensus_7432#1 ------------------------------------------------------------ consensus_7432#0 AATAGCAGTGAGAGTATGTGTTGAAGACCAGCCGTATCTAAATGTGTGCAGTGTGCGTCT 360 consensus_7432#1 ------------------------------------------------------------ consensus_7432#0 AAACGAGGGTGGTGTGTAGGCATTTGGTGCAAGCTACAATTCCTGTATCGCAGATCTCGA 420 consensus_7432#1 ------------------------------------------------------------ consensus_7432#0 CGAAAGTGCATTTGGAGGTTTTTTTCGGAGGTAGCAATTGAGTTCTAAAACTTGCACAGT 480 consensus_7432#1 ------------------------------------------------------------ consensus_7432#0 AGCGCACCACGAGTACGGGAGAGCTGGAGGGGAGCTAAAAGTGTACCATTCCACGTGGAT 540 consensus_7432#1 ------------------------------------------------------------ consensus_7432#0 GTGATTATTGATTTAAAGCAAAAAAGGGAAGCAATCACACGTGTCGGCAAGTGAGAGTCT 600 consensus_7432#1 ------------------------------------------------------------ consensus_7432#0 ATTTTCGTCCGATCAGCAAGAAGCCAGACGATTCTGTGGTAGTGTATGTGTGTCTGTGTT 660 consensus_7432#1 ------------------------------------------------------------ consensus_7432#0 TGTGTGTGCAAGTTTGTTCATTTGTGTGGTTGCCGTACAGTGCCAGGAAGCGTTGTTCGT 720 consensus_7432#1 ------------------------------------------------------------ consensus_7432#0 GGGAGAGTAAATAGCAGAAAATCAATCAAAAAGAGCCGCCAGTTTAGAGCGAGGAACATA 780 consensus_7432#1 ------------------------------------------------------------ consensus_7432#0 GCCAGTGTCGCCATAGTTGGTGAAAAATCAGTGAAATTCCGGACCCACCTGTGAAGTCCT 840 consensus_7432#1 ------------------------------------------------------------ consensus_7432#0 GTGCTGGACAGGAAGTTCCGGTTGGGTAGGCGTGAGCGAAAGTGAGATAGAGAGAAAAAG 900 consensus_7432#1 ------------------------------------------------------------ consensus_7432#0 AGTCACTCAAAAGGCAGAAGGGAAGGCAACGCTGACCCAATCCTTTTTAGAGATCGACTC 960 consensus_7432#1 ------------------------------------------------------------ consensus_7432#0 AACGTCCTCGAAAACCGTCTTCATGTATAAGTTCTTCGTGAATTCCAGTGTTAAGTACAT 1020 consensus_7432#1 ------------------------------------------------------------ consensus_7432#0 AATCAAGTAGAAGCG--ACTGTTCAATTGCGCGAGAGGCTGTGTGT-GTGTGAGAGAGAG 1077 consensus_7432#1 -----GGCAGAATCNCCACGAGGTAATTGCGCGAGAGGCTGTGTGTCGTGTGAGAGAGAG 55 * **** * ** ********************** ************* consensus_7432#0 TGTGTGCAACAGGAAGTGGAGTAAAGGTCAAATCAAAGGAAAAGCTCACCCTTGTGTGTA 1137 consensus_7432#1 TGTGTGCAACAGGAAGTGGAGTAAAGGTCAAATCAAAGGAAAAGCTCACCCTTGTGTGTA 115 ************************************************************ consensus_7432#0 CAGCAGAAAAGGCTCGTGCGAGACGCACGTGCTAGTTTTCCCTAGAGAGAAAGAGAGAAC 1197 consensus_7432#1 CAGCAGAAAAGGCTCGTGCGAGACGCACGTGCTAGTTTTCCCTAGAGAGAAAGAGAGAAC 175 ************************************************************ consensus_7432#0 ACTCTCCCACCCCAACTGGACACAGCTGCTTGTACCGG-CCACGCAACACTTTCCATTTT 1256 consensus_7432#1 ACTCTCCCANCCCAACTGGACACAGCTGCTTGTACCGGGCCACGCAACACTTTCCATTTT 235 ********* **************************** ********************* consensus_7432#0 TCTTCCATTTTCCATTCCGACCGTACCCTCCA-CAACGGATTTCA-TGTGTA-AAGCGGC 1313 consensus_7432#1 TCTTCCATTTTCCATTCCGACCGTACCCTCCAGCAACGGATTTCACTGTGTATAAGCGGC 295 ******************************** ************ ****** ******* consensus_7432#0 A--GCGACC--GGGAAGAATACGCTCCTGCTCGATA-ACAACAA-ACGTGTCCGTTCGTT 1367 consensus_7432#1 GAGGCGAACCGGGGAAGAATACGCTCCTGGGCGTCGGATAACGAGACACATACGGTGGT- 354 **** * ****************** ** * *** * ** * ** * ** consensus_7432#0 TTTCCGCAAACCGCGCTACACGCACTTCTGCTCCGTCTGGTACATCATAGAGGGACGGTC 1427 consensus_7432#1 ----------CCGCTGTACGGNATTTTCCGGNGAAACCGCGGC-TTACAACGGCGACTTC 403 **** *** *** * * * * * * * ** ** consensus_7432#0 CGGCACGAGGAAAACACCGCACGACCCGTTTGTCTGTATCGCTCGCACTACCACCCGGTC 1487 consensus_7432#1 TGNCGTCCG--------------------------------------------------- 412 * * * consensus_7432#0 CAGCAGCATCCGTGAAAAGCCCGTAGAAGCTGACTCCGGCCACCACAGCCCTGTTTAGAA 1547 consensus_7432#1 ------------------------------------------------------------ consensus_7432#0 CCTGAAGCGATTGCCTCCTAGCCCTCGATCAGCACTCGTTCAGTGTAGTTCAGGAT 1603 consensus_7432#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||