These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7434#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1275 fasta sequence [GTCTGTTCTCAGAATGCTCTCGTTGGCTCGGCCCTAGCTATATTATCTATACACCTAAACGTTTTGGAAATTGAAGTAATTGTCATCCCCCCCTACTCCCCACCCCTCCCCATCGCATCATATACGCATACATGTGCACACATACAAGCACACATTTTACCCATCACCATCACGAGATTGGTGAT--GGG--GGGGGGGGGGGAATGCAGGAGGGACTTTTGTGGCGGTGCGCACATATCTTTTGCATATGATTTACTTTCTTATACTTTCTCTTTTCACCTCTGT----TCTCTCTCTCTCCCTCTCCGACCTCTCACCCACACTGCAAACGAAAAAATGTTGAATCAAAGTTCTAAATAGTTCTATTTGTTATATCGTTAAGAAGGGGGGAGCG-GCGCCGC--CCGCCGCCGCCGCCCCAGCAGTATGTGATTATTCACAGGAGTATGATGAAGAAAGAAATGTTGTCGGAAAGCAAGGACGGGGTTGGAAAGTGGGAGAGGGAGTAGTTTTGTTTTCTTCGTGGTTTTCTGTTTCCCCTTAAGTCGCTCTTTTGTACGATCAACTTCGCGTGTAACGTCCTCACA-CACCAGCACACGCGATGCGACACAAAAGCCTGTGCTACTACTTTCTCTCGTTTTTGTTGTTGTTGTTTCGTTTTTGGTTTGTGGATGGTGAGAGAGTATGTATGGTAGAAGAAAGCATCCAAAGCGCTCCTTTAGTAGGGCGCGTGACGCTGTTGGCGACCACCACTGTTGCCTCGCTGCTTTCCACCGCCGTATGCACCGGCGCCTTTGCCCCCTCTTGGACCTCTCTGGACGGCCGCCACCGTTCATGTAGCCACCATCGTAGCCTCCATAGCCATAGTCGTTCATAACCACCGCCGTATCCTTGTCCGTAGCCGTAACCGCCGTAGCCTTGGCCGCCCCATCCTTGTCCGTATCCGCCCTTCGGACCGCCTGGACCGCCGCGACCGCCACGCATGCCGCGCGGCGGGGCACCGCGCATACCGCCCCGTCCACCCATTGGACCCATCGGGCCCATGTTTTCCGGTTTCGGCGTTGCCTTCTTCACGTCCACCTCCTTGCCGGAGATGGTTTGCTTGGGCGTTTTGAGCAGCTCGTTCACCACCTGCTCGGAGTCGAACGTGATGAAGCAGAAGCCCTTGCGCTGGTTCTTCTGCTTGTCGAATGGCATTTCTACCTCCACGATATTTCCGAACTGGCCGAAGAAGGTTTTAATTTCCTCGTCGCTGATCTCCGAGGTCAGCCCGCCGACGAAGAT] [+] EMBL CNS08LGY [GTCTGTTCTCAGAATGCTCTCGTTGGCTCGGCCCTAGCTATATTATCTATACACCTAAACGTTTTGGAAATTGAAGTAATTGTCATCCCCCCCTACTCCCCACCCCTCCCCATCGCATCATATACGCATACATGTGCACACATACAAGCACACATTTTACCCATCACCATCACGAGATTGGTGATGGGGG GGGGGGGGGGGAATGCAGGGGGGACTTTTTTGGGGGTG ] [-] EMBL BX627540 [ cCTCCCCACCTCTCCCCATCGCATCATATACGCATACATGTGCACACATACAAGCACACATTTTACCCATCACCATCACGAGATTGATGAT GGGGAGGGGGGGGGGGAATGGAGGAGGGACTTTTGTGGCGGTGCGCACATATCTTTTGCATATGATTTACTTTCTTATACTTTCTCTTTTCACCTCTGT TCTCTCTCTCTCCCTCTCCGACCTCTCACCCACACTGCAAACGAAAAAATGTTGAATCAAAGTTCTAAAT ] [-] EMBL BM577625 [ ATACATGTGCACACATACAAGCACACATTTTACCCATCACCATCACGAGATTGGTGAT GGG GGGGGGGGGGGAATGCAGGAGGGACTTTTGTGGCGGTGCGCACATATCTTTTGCATATGATTTACTTTCTTATACTTTCTCTTTTCAGCTCTGTTCTCTCTCTCTCTCTCCCTCTCCGACCTCTCACCCACACAGCAAACGAAAAAATGTTGAATCAAAGTTCTAAATAGTTCTATTTGTTATATCGTTAAGAAGGGGGGAGCG GCGCCGCCGCCGCCGCCGCCGCCCCAGCAGTATGTGATTATTCACAGGAGTATGATGAAGAAAGAAATGTTGTCGGAAAGCAAGGACGGGGTTGGAAAGTGGGAGAGGGAGTAGTTTTGTTTTCTTCGTGGTTTTCTGTTTCCCCTTAAGTCGCTCTTTTGTACGATCAACTTCGCGTGTAACGTCCTCACA CACC ] [+] EMBL CNS08QFA [ aacacCTAAATAGTTCTATTTGTTATATCGTTAAGAAGGGGGGAGCGCGCGCCGC CCGCCGCCGCCGCCCCAGCAGTATGTGATTATTCACAGGAGTATGATGAAGAAAGAAATGTTGTCGGAAAGCAAGGACGGGGTTGGAAAGTGGGAGAGGGAGTAGTTTTGTTTTCTTCGTGGTTTTCTGTTTCCCCTTAAGTCGCTCTTTTGTACGATCAACTTCGCGTGTAACGTCCTCACA CACCAGCACACGCGATGCGACACAAAAGCCTGTGCTACTACTTTCTCTCGTTTTTGTTGTTGTTGTTTCGTTTTTGGTTTGTGGATGGTGAGAGAGTATGTATGGTAGAAGAAAGCATCCAAAGCGCTCCTTTAGTAGGGCGCGTGACGCTGTTGGCGACCACCACTGTTGCCTCGCTGCTTTCCACCGCCGTATGCACCGGCGCCTTTGCCCCCTCTTGGACCTCTCTGGACGGCCGCCACCGTTCATGTAGCCACCATCGTAGCCTCCATAGCCATAGTCGTTCATAACCACCGCCGTATCCTTGTCCGTAGCCGTAACCGCCGTAGCCTTGGCCGCCCCATCCTTGTCCGTATCCGCCCTTCGGACCGCCTGGACCGCCGCGACCGCCACGCATGCCGCGCGGCGGGGCACCGCGCATACCGCCCCGTCCACCCATTGGACCCATCGGGCCCATGTTTTCCGGTTTCGGCGTTGCCTTCTTCACGTCCACCTCCTTGCCGGAGATGGTTTGCTTGGGCGTTTTGAGCAGCTCGTTCACCACCTGCTCGGAGTCGAACGTGATGAAGCAGAAGCCCTTGCGCTGGTTCTTCTGCTTGTCGAATGGCATTTCTACCTCCACGATATTTCCGAACTGGCCGAAGAAGGTTTTAATTTCCTCGTCGCTGATCTCCGAGGTCAGCCCGCCGACGAAGAT] [-] EMBL BM612097 [ AGAAATGTTGTCGGAAAGCAAGGACGGGGTTGGAAAGTGGGAGAGGGAGTAGTTTTGTTTTCTTCGTGGTTTTCTGTTTCCCCTTAAGTCGCTCTTTTGTACGATCAACTTCGCGTGTAACGTCCTCACACCACCAGCACACGCGATGCGACACAAAAGCCTGTGCTACTACTTTCTCTCGTTTTTGTTGTTGTTGTTTCGTTTTTGGTTTGTGGATGGTGAGAGAGTATGTATGGTAGAAGAAAGCATCCAAAGCGCTCCTTTAGTAGGGCGCGTGACGCTGTTGGCGACCACCACTGTTGCCTCGCTGCTTTCCACCGCCGTATGCACCGGCGCCTTTGCCCCCTCTTGGACCTC CTGGACGGCCGCCACCGTTCATGTAGCCACCATCGTAGCCTCCATAGCCATAGTCG TCATAACCACCGCCGTATCCTTGTCCGTAGCCGTAACCGCCGTAGCCTTGGCCGCCCCATCCTTGTCCGTATCCGCCCTTCGGACCGCCTGGACCGCCGCGACCGCCACGCATGCCGCGCGGCGGCGGACCGCGCATACCGCCCCGTCCACCCATTGGACCCATCGGGCCCATGTTTTCCGGTTTCGGCGTTGCCTTCTTCACGTCCACCTCCTTGCgg ] consensusID : consensus_7434#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCGCTCGTACACTTTTTCTTCCTTCCTCACTTTCTCTCTCTCTCTCTAGTGATGTTTGTTCGGCAGGCGGTTGTTGAATTTACCACGACCGCCGTAATAGCCGCCGGACAAATCGTAACCACCGTTATTGTAGCCTCCATACCATCTGGCTAAGTAATCGTAACCATAATCACCATAACCACCGCCGTATCCTTGTCCGTAGCCGTAACCGCCGTAGCCTTGGCCGCCCCATCCTTGTCCGTATCCGCCCTTCGGACCGCCTGGACCGCCGCGACCGCCACGCATGCCGCGCGGCGGCGGACCGCGCATACCGCCCCGTCCACCCATTGGACCCATCGGGCCCATGTTTTCCGGTTTCGGCGTTGCCTTCTTCACGTCCACCTCCTTGCCGGAGATGGTTTGCTTGGGCGTCTTGAGCAGCTCGTTCACCACCTGCTCAGAGTCGAACGTGATGAAGCAGAAGCCCTTGCGCTGGTTCTTCTGCTTGTCGAATGGCATTTCTACCTCCACGATATTTCCGAACTGGCCGAAGAAGGTTTTAATTTCCTCGTCGCTGATCTCCGAGGTCAGCCCGCCGACGAAGATCTTGCCGTACCGGGCCTTCGCCTTCTTCGGACGCGTGGGCGG] [-] EMBL BM646131 [CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCGCTCGTACACTTTTTCTTCCTTCCTCACTTTCTCTCTCTCTCTCTAGTGATGTTTGTTCGGCAGGCGGTTGTTGAATTTACCACGACCGCCGTAATAGCCGCCGGACAAATCGTAACCACCGTTATTGTAGCCTCCATACCATCTGGCTAAGTAATCGTAACCATAATCACCATAACCACCGCCGTATCCTTGTCCGTAGCCGTAACCGCCGTAGCCTTGGCCGCCCCATCCTTGTCCGTATCCGCCCTTCGGACCGCCTGGACCGCCGCGACCGCCACGCATGCCGCGCGGCGGCGGACCGCGCATACCGCCCCGTCCACCCATTGGACCCATCGGGCCCATGTTTTCCGGTTTCGGCGTTGCCTTCTTCACGTCCACCTCCTTGCCGGAGATGGTTTGCTTGGGCGTCTTGAGCAGCTCGTTCACCACCTGCTCAGAGTCGAACGTGATGAAGCAGAAGCCCTTGCGCTGGTTCTTCTGCTTGTCGAATGGCATTTCTACCTCCACGATATTTCCGAACTGGCCGAAGAAGGTTTTAATTTCCTCGTCGCTGATCTCCGAGGTCAGCCCGCCGACGAAGATCTTGCCGTACCGGGCCTTCGCCTTCTTCGGACGCGTGGGCGG] consensusID : consensus_7434#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [TCTCTCCCCATCGCATCATATACGCATACATGTGCACACATACAAGCACACATTTTACCCATCACCATCACGAGATTGGTGATGGGGGGGGGGGGGGAATGGAGGAGGGACTTTTGTGGCGGTGCGCACATATCTTTTGCATATGATTTACTTTCTTATACTTTCTCTTTTCACCTCTGTTCTCTCTCTCTCTCTCCCTCTCCGACCTCTCACCCACACTGCAAACGAAAAAATGTTGAATCAAAGTTCTAAATAGTTCTATTTGTTATATCGTTAAGAAGGGAGTAGTTTTGTTTTCTTCGTGGTTTTCTGTTTCCCCTTAAGTCGCTCTTTTGTACGATCAACTTCGCGT] [-] EMBL BX625908 [TCTCTCCCCATCGCATCATATACGCATACATGTGCACACATACAAGCACACATTTTACCCATCACCATCACGAGATTGGTGATGGGGGGGGGGGGGGAATGGAGGAGGGACTTTTGTGGCGGTGCGCACATATCTTTTGCATATGATTTACTTTCTTATACTTTCTCTTTTCACCTCTGTTCTCTCTCTCTCTCTCCCTCTCCGACCTCTCACCCACACTGCAAACGAAAAAATGTTGAATCAAAGTTCTAAATAGTTCTATTTGTTATATCGTTAAGAAGGGAGTAGTTTTGTTTTCTTCGTGGTTTTCTGTTTCCCCTTAAGTCGCTCTTTTGTACGATCAACTTCGCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7434#0 GTCTGTTCTCAGAATGCTCTCGTTGGCTCGGCCCTAGCTATATTATCTATACACCTAAAC 60 consensus_7434#2 ------------------------------------------------------------ consensus_7434#1 ------------------------------------------------------------ consensus_7434#0 GTTTTGGAAATTGAAGTAATTGTCATCCCCCCCTACTCCCCACCCCTCCCCATCGCATCA 120 consensus_7434#2 ------------------------------------------TCTCTCCCCATCGCATCA 18 consensus_7434#1 ---------------------------CTCTCTCTCTCTCTCTCTCTCTCTCTCTC-TCT 32 * *** * ** * ** consensus_7434#0 TATACGCATACATGTGCACACATACAAGCACACATTTTACCCATCACCATCACGAGATTG 180 consensus_7434#2 TATACGCATACATGTGCACACATACAAGCACACATTTTACCCATCACCATCACGAGATTG 78 consensus_7434#1 TTCTCGCTCGTACACTTTTTCTTCCTTCCTCACTTTCTCTCTCTCTCTCTAGTGATGTTT 92 * *** * * * * * *** ** * * ** * * ** ** consensus_7434#0 GTGATGGGGGGGGGGGGGGAATGCAGGAGGGACTTTTGTGGCGGTG--CGCACATATCTT 238 consensus_7434#2 GTGATGGGGGGGGGGGGGGAATGGAGGAGGGACTTTTGTGGCGGTG--CGCACATATCTT 136 consensus_7434#1 GTTCGGCAGGCGGTTGTTGAATTTACCACG-ACCGCCGTAATAGCCGCCGGACAAATCGT 151 ** * ** ** * **** * * * ** ** * ** *** *** * consensus_7434#0 TTGCAT-ATGATTTACTTTCTTATACTTTCT--CTTTTCACCTCTGTTCTCTCTCTCTC- 294 consensus_7434#2 TTGCAT-ATGATTTACTTTCTTATACTTTCT--CTTTTCACCTCTGTTCTCTCTCTCTCT 193 consensus_7434#1 AACCACCGTTATTGTAGCCTCCATACCATCTGGCTAAGTAATCGTAACCATAATCACCAT 211 ** * *** **** *** ** * * * ** * consensus_7434#0 ---CCTCTCCGACCTCTCACCCACA-CTGCAAACGAAAAAATGTTGA--ATCAAAGTTCT 348 consensus_7434#2 CTCCCTCTCCGACCTCTCACCCACA-CTGCAAACGAAAAAATGTTGA--ATCAAAGTTCT 250 consensus_7434#1 AACCACCGCCGTATCCTTGTCCGTAGCCGTAACCGCCGTAGCCTTGGCCGCCCCATCCTT 271 * * *** ** ** * * * ** ** * *** * * * consensus_7434#0 AAATAGTTCTATTTGTTATATCGTTAAGAAGGGGGGA---GCGGCGCCGCC--CGCCGCC 403 consensus_7434#2 AAATAGTTCTATTTGTTATATCGTTAAGAAGGGAGTA---GTTTTGTTTTCTTCGTGGTT 307 consensus_7434#1 GTCCGTATCCGCCCTTCGGACCGCCTGGACCGCCGCGACCGCCACGCATGCCGCGCGGCG 331 ** * * ** ** * * * * * ** * consensus_7434#0 GCCGCCCCAGCAGTATGTGAT-TATTCACAGGAGTATGATGAAGAAAGAAATGTTGTCGG 462 consensus_7434#2 TTCTGTTTCCCCTTAAGTCGC-TCTTTT-----GTACGATCAACTTCGCGT--------- 352 consensus_7434#1 GCGGACCGCGCATACCGCCCCGTCCACCCATTGGACCCATCGGGCCCATGTTTTCCGGTT 391 * * * * ** consensus_7434#0 AAAGCAAGGACGGGGTTGGAAAGTGGGAGAGGGAGTAGTTTTGTTTTCTTCGTGGTTTTC 522 consensus_7434#2 ------------------------------------------------------------ consensus_7434#1 TCGGCGTTGCCTTCTTCACGTCCACCTCCTTGCCGGAGATGGTTTGCTTGGGCGTCTTGA 451 consensus_7434#0 TGTTTCCCCTTAAGTCGCTCTTTTGTACGATCAACTTCGCGTGTAACGTCCTCACACACC 582 consensus_7434#2 ------------------------------------------------------------ consensus_7434#1 GCAGCTCGTTCACCACCTGCTCAGAGTCGAACGTGATGAAGCAGAAGCCCTTGCGCTGGT 511 consensus_7434#0 AGCACACGCGATGCGACACAAAAGCCTGTGCTACTACTTTCTCTCGTTTTTGTTGTTGTT 642 consensus_7434#2 ------------------------------------------------------------ consensus_7434#1 TCTTCTGCTTGTCGAATGGCATTTCTACCTCCACGATATTTCCGAACTGGCCGAAGAAGG 571 consensus_7434#0 GTTTCGTTTTTGGTTTGTGGATGGTGAGAGAGTATGTATGGTAGAAGAAAGCATCCAAAG 702 consensus_7434#2 ------------------------------------------------------------ consensus_7434#1 TTTTAATTTCCTCGTCGCTGATCTCCGAGGTCAGCCCGCCGACGAAGATCTTGCCGTACC 631 consensus_7434#0 CGCTCCTTTAGTAGGGCGCGTGACGCTGTTGGCGACCACCACTGTTGCCTCGCTGCTTTC 762 consensus_7434#2 ------------------------------------------------------------ consensus_7434#1 GGGCCTTCGCCTTCTTCGGACGCGTGGGCGG----------------------------- 662 consensus_7434#0 CACCGCCGTATGCACCGGCGCCTTTGCCCCCTCTTGGACCTCTCTGGACGGCCGCCACCG 822 consensus_7434#2 ------------------------------------------------------------ consensus_7434#1 ------------------------------------------------------------ consensus_7434#0 TTCATGTAGCCACCATCGTAGCCTCCATAGCCATAGTCGTTCATAACCACCGCCGTATCC 882 consensus_7434#2 ------------------------------------------------------------ consensus_7434#1 ------------------------------------------------------------ consensus_7434#0 TTGTCCGTAGCCGTAACCGCCGTAGCCTTGGCCGCCCCATCCTTGTCCGTATCCGCCCTT 942 consensus_7434#2 ------------------------------------------------------------ consensus_7434#1 ------------------------------------------------------------ consensus_7434#0 CGGACCGCCTGGACCGCCGCGACCGCCACGCATGCCGCGCGGCGGGGCACCGCGCATACC 1002 consensus_7434#2 ------------------------------------------------------------ consensus_7434#1 ------------------------------------------------------------ consensus_7434#0 GCCCCGTCCACCCATTGGACCCATCGGGCCCATGTTTTCCGGTTTCGGCGTTGCCTTCTT 1062 consensus_7434#2 ------------------------------------------------------------ consensus_7434#1 ------------------------------------------------------------ consensus_7434#0 CACGTCCACCTCCTTGCCGGAGATGGTTTGCTTGGGCGTTTTGAGCAGCTCGTTCACCAC 1122 consensus_7434#2 ------------------------------------------------------------ consensus_7434#1 ------------------------------------------------------------ consensus_7434#0 CTGCTCGGAGTCGAACGTGATGAAGCAGAAGCCCTTGCGCTGGTTCTTCTGCTTGTCGAA 1182 consensus_7434#2 ------------------------------------------------------------ consensus_7434#1 ------------------------------------------------------------ consensus_7434#0 TGGCATTTCTACCTCCACGATATTTCCGAACTGGCCGAAGAAGGTTTTAATTTCCTCGTC 1242 consensus_7434#2 ------------------------------------------------------------ consensus_7434#1 ------------------------------------------------------------ consensus_7434#0 GCTGATCTCCGAGGTCAGCCCGCCGACGAAGAT 1275 consensus_7434#2 --------------------------------- consensus_7434#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||