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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7434#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1275 fasta sequence
[GTCTGTTCTCAGAATGCTCTCGTTGGCTCGGCCCTAGCTATATTATCTATACACCTAAACGTTTTGGAAATTGAAGTAATTGTCATCCCCCCCTACTCCCCACCCCTCCCCATCGCATCATATACGCATACATGTGCACACATACAAGCACACATTTTACCCATCACCATCACGAGATTGGTGAT--GGG--GGGGGGGGGGGAATGCAGGAGGGACTTTTGTGGCGGTGCGCACATATCTTTTGCATATGATTTACTTTCTTATACTTTCTCTTTTCACCTCTGT----TCTCTCTCTCTCCCTCTCCGACCTCTCACCCACACTGCAAACGAAAAAATGTTGAATCAAAGTTCTAAATAGTTCTATTTGTTATATCGTTAAGAAGGGGGGAGCG-GCGCCGC--CCGCCGCCGCCGCCCCAGCAGTATGTGATTATTCACAGGAGTATGATGAAGAAAGAAATGTTGTCGGAAAGCAAGGACGGGGTTGGAAAGTGGGAGAGGGAGTAGTTTTGTTTTCTTCGTGGTTTTCTGTTTCCCCTTAAGTCGCTCTTTTGTACGATCAACTTCGCGTGTAACGTCCTCACA-CACCAGCACACGCGATGCGACACAAAAGCCTGTGCTACTACTTTCTCTCGTTTTTGTTGTTGTTGTTTCGTTTTTGGTTTGTGGATGGTGAGAGAGTATGTATGGTAGAAGAAAGCATCCAAAGCGCTCCTTTAGTAGGGCGCGTGACGCTGTTGGCGACCACCACTGTTGCCTCGCTGCTTTCCACCGCCGTATGCACCGGCGCCTTTGCCCCCTCTTGGACCTCTCTGGACGGCCGCCACCGTTCATGTAGCCACCATCGTAGCCTCCATAGCCATAGTCGTTCATAACCACCGCCGTATCCTTGTCCGTAGCCGTAACCGCCGTAGCCTTGGCCGCCCCATCCTTGTCCGTATCCGCCCTTCGGACCGCCTGGACCGCCGCGACCGCCACGCATGCCGCGCGGCGGGGCACCGCGCATACCGCCCCGTCCACCCATTGGACCCATCGGGCCCATGTTTTCCGGTTTCGGCGTTGCCTTCTTCACGTCCACCTCCTTGCCGGAGATGGTTTGCTTGGGCGTTTTGAGCAGCTCGTTCACCACCTGCTCGGAGTCGAACGTGATGAAGCAGAAGCCCTTGCGCTGGTTCTTCTGCTTGTCGAATGGCATTTCTACCTCCACGATATTTCCGAACTGGCCGAAGAAGGTTTTAATTTCCTCGTCGCTGATCTCCGAGGTCAGCCCGCCGACGAAGAT]
[+] EMBL CNS08LGY [GTCTGTTCTCAGAATGCTCTCGTTGGCTCGGCCCTAGCTATATTATCTATACACCTAAACGTTTTGGAAATTGAAGTAATTGTCATCCCCCCCTACTCCCCACCCCTCCCCATCGCATCATATACGCATACATGTGCACACATACAAGCACACATTTTACCCATCACCATCACGAGATTGGTGATGGGGG GGGGGGGGGGGAATGCAGGGGGGACTTTTTTGGGGGTG ]
[-] EMBL BX627540 [ cCTCCCCACCTCTCCCCATCGCATCATATACGCATACATGTGCACACATACAAGCACACATTTTACCCATCACCATCACGAGATTGATGAT GGGGAGGGGGGGGGGGAATGGAGGAGGGACTTTTGTGGCGGTGCGCACATATCTTTTGCATATGATTTACTTTCTTATACTTTCTCTTTTCACCTCTGT TCTCTCTCTCTCCCTCTCCGACCTCTCACCCACACTGCAAACGAAAAAATGTTGAATCAAAGTTCTAAAT ]
[-] EMBL BM577625 [ ATACATGTGCACACATACAAGCACACATTTTACCCATCACCATCACGAGATTGGTGAT GGG GGGGGGGGGGGAATGCAGGAGGGACTTTTGTGGCGGTGCGCACATATCTTTTGCATATGATTTACTTTCTTATACTTTCTCTTTTCAGCTCTGTTCTCTCTCTCTCTCTCCCTCTCCGACCTCTCACCCACACAGCAAACGAAAAAATGTTGAATCAAAGTTCTAAATAGTTCTATTTGTTATATCGTTAAGAAGGGGGGAGCG GCGCCGCCGCCGCCGCCGCCGCCCCAGCAGTATGTGATTATTCACAGGAGTATGATGAAGAAAGAAATGTTGTCGGAAAGCAAGGACGGGGTTGGAAAGTGGGAGAGGGAGTAGTTTTGTTTTCTTCGTGGTTTTCTGTTTCCCCTTAAGTCGCTCTTTTGTACGATCAACTTCGCGTGTAACGTCCTCACA CACC ]
[+] EMBL CNS08QFA [ aacacCTAAATAGTTCTATTTGTTATATCGTTAAGAAGGGGGGAGCGCGCGCCGC CCGCCGCCGCCGCCCCAGCAGTATGTGATTATTCACAGGAGTATGATGAAGAAAGAAATGTTGTCGGAAAGCAAGGACGGGGTTGGAAAGTGGGAGAGGGAGTAGTTTTGTTTTCTTCGTGGTTTTCTGTTTCCCCTTAAGTCGCTCTTTTGTACGATCAACTTCGCGTGTAACGTCCTCACA CACCAGCACACGCGATGCGACACAAAAGCCTGTGCTACTACTTTCTCTCGTTTTTGTTGTTGTTGTTTCGTTTTTGGTTTGTGGATGGTGAGAGAGTATGTATGGTAGAAGAAAGCATCCAAAGCGCTCCTTTAGTAGGGCGCGTGACGCTGTTGGCGACCACCACTGTTGCCTCGCTGCTTTCCACCGCCGTATGCACCGGCGCCTTTGCCCCCTCTTGGACCTCTCTGGACGGCCGCCACCGTTCATGTAGCCACCATCGTAGCCTCCATAGCCATAGTCGTTCATAACCACCGCCGTATCCTTGTCCGTAGCCGTAACCGCCGTAGCCTTGGCCGCCCCATCCTTGTCCGTATCCGCCCTTCGGACCGCCTGGACCGCCGCGACCGCCACGCATGCCGCGCGGCGGGGCACCGCGCATACCGCCCCGTCCACCCATTGGACCCATCGGGCCCATGTTTTCCGGTTTCGGCGTTGCCTTCTTCACGTCCACCTCCTTGCCGGAGATGGTTTGCTTGGGCGTTTTGAGCAGCTCGTTCACCACCTGCTCGGAGTCGAACGTGATGAAGCAGAAGCCCTTGCGCTGGTTCTTCTGCTTGTCGAATGGCATTTCTACCTCCACGATATTTCCGAACTGGCCGAAGAAGGTTTTAATTTCCTCGTCGCTGATCTCCGAGGTCAGCCCGCCGACGAAGAT]
[-] EMBL BM612097 [ AGAAATGTTGTCGGAAAGCAAGGACGGGGTTGGAAAGTGGGAGAGGGAGTAGTTTTGTTTTCTTCGTGGTTTTCTGTTTCCCCTTAAGTCGCTCTTTTGTACGATCAACTTCGCGTGTAACGTCCTCACACCACCAGCACACGCGATGCGACACAAAAGCCTGTGCTACTACTTTCTCTCGTTTTTGTTGTTGTTGTTTCGTTTTTGGTTTGTGGATGGTGAGAGAGTATGTATGGTAGAAGAAAGCATCCAAAGCGCTCCTTTAGTAGGGCGCGTGACGCTGTTGGCGACCACCACTGTTGCCTCGCTGCTTTCCACCGCCGTATGCACCGGCGCCTTTGCCCCCTCTTGGACCTC CTGGACGGCCGCCACCGTTCATGTAGCCACCATCGTAGCCTCCATAGCCATAGTCG TCATAACCACCGCCGTATCCTTGTCCGTAGCCGTAACCGCCGTAGCCTTGGCCGCCCCATCCTTGTCCGTATCCGCCCTTCGGACCGCCTGGACCGCCGCGACCGCCACGCATGCCGCGCGGCGGCGGACCGCGCATACCGCCCCGTCCACCCATTGGACCCATCGGGCCCATGTTTTCCGGTTTCGGCGTTGCCTTCTTCACGTCCACCTCCTTGCgg ]
consensusID : consensus_7434#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence
[CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCGCTCGTACACTTTTTCTTCCTTCCTCACTTTCTCTCTCTCTCTCTAGTGATGTTTGTTCGGCAGGCGGTTGTTGAATTTACCACGACCGCCGTAATAGCCGCCGGACAAATCGTAACCACCGTTATTGTAGCCTCCATACCATCTGGCTAAGTAATCGTAACCATAATCACCATAACCACCGCCGTATCCTTGTCCGTAGCCGTAACCGCCGTAGCCTTGGCCGCCCCATCCTTGTCCGTATCCGCCCTTCGGACCGCCTGGACCGCCGCGACCGCCACGCATGCCGCGCGGCGGCGGACCGCGCATACCGCCCCGTCCACCCATTGGACCCATCGGGCCCATGTTTTCCGGTTTCGGCGTTGCCTTCTTCACGTCCACCTCCTTGCCGGAGATGGTTTGCTTGGGCGTCTTGAGCAGCTCGTTCACCACCTGCTCAGAGTCGAACGTGATGAAGCAGAAGCCCTTGCGCTGGTTCTTCTGCTTGTCGAATGGCATTTCTACCTCCACGATATTTCCGAACTGGCCGAAGAAGGTTTTAATTTCCTCGTCGCTGATCTCCGAGGTCAGCCCGCCGACGAAGATCTTGCCGTACCGGGCCTTCGCCTTCTTCGGACGCGTGGGCGG]
[-] EMBL BM646131 [CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCGCTCGTACACTTTTTCTTCCTTCCTCACTTTCTCTCTCTCTCTCTAGTGATGTTTGTTCGGCAGGCGGTTGTTGAATTTACCACGACCGCCGTAATAGCCGCCGGACAAATCGTAACCACCGTTATTGTAGCCTCCATACCATCTGGCTAAGTAATCGTAACCATAATCACCATAACCACCGCCGTATCCTTGTCCGTAGCCGTAACCGCCGTAGCCTTGGCCGCCCCATCCTTGTCCGTATCCGCCCTTCGGACCGCCTGGACCGCCGCGACCGCCACGCATGCCGCGCGGCGGCGGACCGCGCATACCGCCCCGTCCACCCATTGGACCCATCGGGCCCATGTTTTCCGGTTTCGGCGTTGCCTTCTTCACGTCCACCTCCTTGCCGGAGATGGTTTGCTTGGGCGTCTTGAGCAGCTCGTTCACCACCTGCTCAGAGTCGAACGTGATGAAGCAGAAGCCCTTGCGCTGGTTCTTCTGCTTGTCGAATGGCATTTCTACCTCCACGATATTTCCGAACTGGCCGAAGAAGGTTTTAATTTCCTCGTCGCTGATCTCCGAGGTCAGCCCGCCGACGAAGATCTTGCCGTACCGGGCCTTCGCCTTCTTCGGACGCGTGGGCGG]
consensusID : consensus_7434#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence
[TCTCTCCCCATCGCATCATATACGCATACATGTGCACACATACAAGCACACATTTTACCCATCACCATCACGAGATTGGTGATGGGGGGGGGGGGGGAATGGAGGAGGGACTTTTGTGGCGGTGCGCACATATCTTTTGCATATGATTTACTTTCTTATACTTTCTCTTTTCACCTCTGTTCTCTCTCTCTCTCTCCCTCTCCGACCTCTCACCCACACTGCAAACGAAAAAATGTTGAATCAAAGTTCTAAATAGTTCTATTTGTTATATCGTTAAGAAGGGAGTAGTTTTGTTTTCTTCGTGGTTTTCTGTTTCCCCTTAAGTCGCTCTTTTGTACGATCAACTTCGCGT]
[-] EMBL BX625908 [TCTCTCCCCATCGCATCATATACGCATACATGTGCACACATACAAGCACACATTTTACCCATCACCATCACGAGATTGGTGATGGGGGGGGGGGGGGAATGGAGGAGGGACTTTTGTGGCGGTGCGCACATATCTTTTGCATATGATTTACTTTCTTATACTTTCTCTTTTCACCTCTGTTCTCTCTCTCTCTCTCCCTCTCCGACCTCTCACCCACACTGCAAACGAAAAAATGTTGAATCAAAGTTCTAAATAGTTCTATTTGTTATATCGTTAAGAAGGGAGTAGTTTTGTTTTCTTCGTGGTTTTCTGTTTCCCCTTAAGTCGCTCTTTTGTACGATCAACTTCGCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7434#0 GTCTGTTCTCAGAATGCTCTCGTTGGCTCGGCCCTAGCTATATTATCTATACACCTAAAC 60
consensus_7434#2 ------------------------------------------------------------
consensus_7434#1 ------------------------------------------------------------
consensus_7434#0 GTTTTGGAAATTGAAGTAATTGTCATCCCCCCCTACTCCCCACCCCTCCCCATCGCATCA 120
consensus_7434#2 ------------------------------------------TCTCTCCCCATCGCATCA 18
consensus_7434#1 ---------------------------CTCTCTCTCTCTCTCTCTCTCTCTCTCTC-TCT 32
* *** * ** * **
consensus_7434#0 TATACGCATACATGTGCACACATACAAGCACACATTTTACCCATCACCATCACGAGATTG 180
consensus_7434#2 TATACGCATACATGTGCACACATACAAGCACACATTTTACCCATCACCATCACGAGATTG 78
consensus_7434#1 TTCTCGCTCGTACACTTTTTCTTCCTTCCTCACTTTCTCTCTCTCTCTCTAGTGATGTTT 92
* *** * * * * * *** ** * * ** * * ** **
consensus_7434#0 GTGATGGGGGGGGGGGGGGAATGCAGGAGGGACTTTTGTGGCGGTG--CGCACATATCTT 238
consensus_7434#2 GTGATGGGGGGGGGGGGGGAATGGAGGAGGGACTTTTGTGGCGGTG--CGCACATATCTT 136
consensus_7434#1 GTTCGGCAGGCGGTTGTTGAATTTACCACG-ACCGCCGTAATAGCCGCCGGACAAATCGT 151
** * ** ** * **** * * * ** ** * ** *** *** *
consensus_7434#0 TTGCAT-ATGATTTACTTTCTTATACTTTCT--CTTTTCACCTCTGTTCTCTCTCTCTC- 294
consensus_7434#2 TTGCAT-ATGATTTACTTTCTTATACTTTCT--CTTTTCACCTCTGTTCTCTCTCTCTCT 193
consensus_7434#1 AACCACCGTTATTGTAGCCTCCATACCATCTGGCTAAGTAATCGTAACCATAATCACCAT 211
** * *** **** *** ** * * * ** *
consensus_7434#0 ---CCTCTCCGACCTCTCACCCACA-CTGCAAACGAAAAAATGTTGA--ATCAAAGTTCT 348
consensus_7434#2 CTCCCTCTCCGACCTCTCACCCACA-CTGCAAACGAAAAAATGTTGA--ATCAAAGTTCT 250
consensus_7434#1 AACCACCGCCGTATCCTTGTCCGTAGCCGTAACCGCCGTAGCCTTGGCCGCCCCATCCTT 271
* * *** ** ** * * * ** ** * *** * * *
consensus_7434#0 AAATAGTTCTATTTGTTATATCGTTAAGAAGGGGGGA---GCGGCGCCGCC--CGCCGCC 403
consensus_7434#2 AAATAGTTCTATTTGTTATATCGTTAAGAAGGGAGTA---GTTTTGTTTTCTTCGTGGTT 307
consensus_7434#1 GTCCGTATCCGCCCTTCGGACCGCCTGGACCGCCGCGACCGCCACGCATGCCGCGCGGCG 331
** * * ** ** * * * * * ** *
consensus_7434#0 GCCGCCCCAGCAGTATGTGAT-TATTCACAGGAGTATGATGAAGAAAGAAATGTTGTCGG 462
consensus_7434#2 TTCTGTTTCCCCTTAAGTCGC-TCTTTT-----GTACGATCAACTTCGCGT--------- 352
consensus_7434#1 GCGGACCGCGCATACCGCCCCGTCCACCCATTGGACCCATCGGGCCCATGTTTTCCGGTT 391
* * * * **
consensus_7434#0 AAAGCAAGGACGGGGTTGGAAAGTGGGAGAGGGAGTAGTTTTGTTTTCTTCGTGGTTTTC 522
consensus_7434#2 ------------------------------------------------------------
consensus_7434#1 TCGGCGTTGCCTTCTTCACGTCCACCTCCTTGCCGGAGATGGTTTGCTTGGGCGTCTTGA 451
consensus_7434#0 TGTTTCCCCTTAAGTCGCTCTTTTGTACGATCAACTTCGCGTGTAACGTCCTCACACACC 582
consensus_7434#2 ------------------------------------------------------------
consensus_7434#1 GCAGCTCGTTCACCACCTGCTCAGAGTCGAACGTGATGAAGCAGAAGCCCTTGCGCTGGT 511
consensus_7434#0 AGCACACGCGATGCGACACAAAAGCCTGTGCTACTACTTTCTCTCGTTTTTGTTGTTGTT 642
consensus_7434#2 ------------------------------------------------------------
consensus_7434#1 TCTTCTGCTTGTCGAATGGCATTTCTACCTCCACGATATTTCCGAACTGGCCGAAGAAGG 571
consensus_7434#0 GTTTCGTTTTTGGTTTGTGGATGGTGAGAGAGTATGTATGGTAGAAGAAAGCATCCAAAG 702
consensus_7434#2 ------------------------------------------------------------
consensus_7434#1 TTTTAATTTCCTCGTCGCTGATCTCCGAGGTCAGCCCGCCGACGAAGATCTTGCCGTACC 631
consensus_7434#0 CGCTCCTTTAGTAGGGCGCGTGACGCTGTTGGCGACCACCACTGTTGCCTCGCTGCTTTC 762
consensus_7434#2 ------------------------------------------------------------
consensus_7434#1 GGGCCTTCGCCTTCTTCGGACGCGTGGGCGG----------------------------- 662
consensus_7434#0 CACCGCCGTATGCACCGGCGCCTTTGCCCCCTCTTGGACCTCTCTGGACGGCCGCCACCG 822
consensus_7434#2 ------------------------------------------------------------
consensus_7434#1 ------------------------------------------------------------
consensus_7434#0 TTCATGTAGCCACCATCGTAGCCTCCATAGCCATAGTCGTTCATAACCACCGCCGTATCC 882
consensus_7434#2 ------------------------------------------------------------
consensus_7434#1 ------------------------------------------------------------
consensus_7434#0 TTGTCCGTAGCCGTAACCGCCGTAGCCTTGGCCGCCCCATCCTTGTCCGTATCCGCCCTT 942
consensus_7434#2 ------------------------------------------------------------
consensus_7434#1 ------------------------------------------------------------
consensus_7434#0 CGGACCGCCTGGACCGCCGCGACCGCCACGCATGCCGCGCGGCGGGGCACCGCGCATACC 1002
consensus_7434#2 ------------------------------------------------------------
consensus_7434#1 ------------------------------------------------------------
consensus_7434#0 GCCCCGTCCACCCATTGGACCCATCGGGCCCATGTTTTCCGGTTTCGGCGTTGCCTTCTT 1062
consensus_7434#2 ------------------------------------------------------------
consensus_7434#1 ------------------------------------------------------------
consensus_7434#0 CACGTCCACCTCCTTGCCGGAGATGGTTTGCTTGGGCGTTTTGAGCAGCTCGTTCACCAC 1122
consensus_7434#2 ------------------------------------------------------------
consensus_7434#1 ------------------------------------------------------------
consensus_7434#0 CTGCTCGGAGTCGAACGTGATGAAGCAGAAGCCCTTGCGCTGGTTCTTCTGCTTGTCGAA 1182
consensus_7434#2 ------------------------------------------------------------
consensus_7434#1 ------------------------------------------------------------
consensus_7434#0 TGGCATTTCTACCTCCACGATATTTCCGAACTGGCCGAAGAAGGTTTTAATTTCCTCGTC 1242
consensus_7434#2 ------------------------------------------------------------
consensus_7434#1 ------------------------------------------------------------
consensus_7434#0 GCTGATCTCCGAGGTCAGCCCGCCGACGAAGAT 1275
consensus_7434#2 ---------------------------------
consensus_7434#1 ---------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||