These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7439#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 795 fasta sequence [CCGCACTAATCGATCGAGCGCTCACGAGCGCACGAGAACGGACCGGTGTGGTGGTGGTGCTCAGGGAAACCGTGCGGCAGTAGCAGTACATCGGCCGTACCTACATCAACCATCGTCGCGGTGTGGCTTCAACTGTTGTACCACTGGCAGGTGGTTGCGATCGTGAATACGTGAATTCACTCACAAAAATAGTGAAAAATCAACCACCACAGTTGCTCACTTCCGGATGCGTTCGCTCGTTCGTGGAAGATTTGATACGATCGGTGTTTGTGTGATGTGTGTGTTTGCCTGTTTGTGGTACAATTTTTTTGATGTTGGTTTGCTTACTTGTGTGTTAGTGCAGGCACGGTAGAGGTCTCTTCCCACATCGGTCCCTATCAGTCCGCCCGCCCTGCAAACGCATTAGGGTGCGCGATCAGTTGCTAATCATCGTACAGCCGAAGGATCTATCTCATCC-GTACACAA------CCTCCCCCA--CTTTCCCTCTCTCCCTGTACATCTGATGCATGCATGTGGCGGTGGCGACGGTGGCAGCACGCCCCATGGACAGAGTAGACCTGGACTATGAGTTGTTTGGCACGCGCTCAGTGAGTGTTTCGACCGCGGTCGCACATCACAACAACAGTGACCGACCGGAGGGTGGTGTTGGTGGGTGGTGGTTGTGTGTAGCATTATTTATTGGTGGCAGATCAAAACCATGTCCGGGTCCGGGGGGAGGCGACGATCGAGCATATATTGCTTGCCGAAGCCTCGGTACAGTTGTGTGCCCGTGTGAACTGCGACATTGACTCTACGGGT] [+] EMBL BM630914 [CCGCACTAATCGATCGAGCGCTCACGAGCGCACGAGAACGGACCGGTGTGGTGATGGTGCTCAGGGAAACCGTGCGGCAGTAGCAGTACATCGGCCGTACCTACATCAACCATCGTCGCGGTGTGGCTTCAACTGTTGTACCACTGGCAGGTGGTTGCGATCGTGAATACGTGAATTCACTCACAAAAATAGTGAAAAATCAACCACCACAGTTGCTCACTTCCGGATGCGTTCGCTCGTTCGTGGAAGATTTGATACGATCGGTGTTTGTGTGATGTGTGTGTTTGCCTGTTTGTGGTACAATTTTTTTGATGTTGGTTTGCTTACTTGTGTGTTAGTGCAGGCACGGTAGAGGTCTCTTCCCACATCGGTCCCTATCAGTCCGCCCGCCCTGCAAACGCATTAGAGTGCGCGATCAGTTGCTAATCATCGTACAGCCGAAGGATCTATCTCATCC GTACACAA CCTCCCCCA CTTTCCCTCTCTCCCTGTACATCTGATGCATGCATGTGGCGGTGGCGACGGTGGCAGCACGCCCCATGGACAGAGTAGACCTGGACTATGAGTTGTTTGGCACGCGCTCAGTGAGTGTT ] [+] EMBL BM646492 [ ccgGCGCTCACGAGCGCACGAGAACGGACCGGTGTGGTGGTGGTGCTCAGGGAAACCGTGCGGCAGTAGCAGTACATCGGCCGTACCTACATCAACCATCGTCGCGGTGTGGCTTCAACTGTTGTACCACTGGCAGGTGGTTGCGATCGTGAATACGTGAATTCACTCACAAAAATAGTGAAAAATCAACCACCATAGTTGCTCACTTCCGGATGCGTTCGCTCGTTCGTGGAAGATTTGATACGATCGGTGTTTGTGTGATGTGTGTGTTTGCCTGTTTGTGGTACAATTTTTTTGATGTTGGTTTGCTTACTTGTGTGTTAGTGCAGGCACGGTAGAGGTCTCTTCCCACATCGGTCCCTATCAGTCCGCCCGCCCTGCAAACGCATTAGGGTGCGCGATCAGTTGCTAATCATCGTACAGCCGAAGGATCTATCTCGTCC GTATACA CCCC TCCCTC CTC GTACATTCAATGCATGCATGTGGCGGTGGCGACGGTGGCAGCACGCCCCATGGACAGAGTAGGCCTGGACTATGAGTTGTTTGGCACGCGCTCAGTGAGTGTTTCG ] [+] EMBL BM640514 [ ccgCACGAGCGCACGAGAACGGACCGGTGTGGTGGTGGTGCTCAGGGAAACCGCGCAGCAGTAGCAGTACATCGGCCGTACCTACATCAACCATCGTCGCGGTGTGGCTTCAGCTGTTGTACCACTGGCAGGTGGTTGCGATCGTGAATACGTGAATTCACTCACAAAAATAGTGAAAAATCAACCACCACAGTTGCTCACTTCCGGATGCGTTCGCTCGTTCGTGGAAGATTTGATACGATCGGTGTTTGTGTGATGTGTGTGTTTGCCTGTTTGTGGTACAATTTTTTTGATGTTGGTTTGCTTACTTGTGTGTTAGTGCAGGCACGGTAGAGGTCTCTTCCCACATCGGTCCCTATCAGTCCGCTCGCCCTGCAAACGCATTAGGGTGCGCGATCAGTTGCTAATCATCGTACAGCCGAAGGATCTATCTCATCCGGTATACAACCCCCCCCCCCCCCACCCTTTAAACCTCTCCCTGTACATCTGATGCATGCATGTGGCGGTGGCGACGGTGGCAGCACGCCCCATGGACAGAGTAGACCTGGACTATGAGTTGTTTGGCACGCGCTCAGTGAGTGTTTCGACCGCGGTCG ] [+] EMBL BM590588 [ ccgGTTGCTAATCATCGTACAGCCGAAGGATCTATCTCATCC GTACACAA CCTCCCCCA CTTTCCCTCTCTCCCTGTACATCTGATGCATGCATGTGGCGGTGGCGACGGTGGCAGCACGCCCCATGGACAGAGTAGACCTGGACTATGAGTTGTTTGGCACGCGCTCAGTGAGTGTTTCGACCGCGGTCGCACATCACAACAACAGTGACCGACCGGAGGGTGGTGTTGGTGGGTGGTGGTTGTGTGTAGCATTATTTATTGGTGGCAGATCAAAACCATGTCCGGGTCCGGGGGGAGGCGACGATCGAGCATATATTGCTTGCCGAAGCCTCGGTACAGTTGTGTGCCCGTGTGAACTGCGACATTGACTCTACGGGT] consensusID : consensus_7439#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 668 fasta sequence [ATCGCCACGAGGTTAATTACTCTTAGTGCGTTCAGCCTTCATCATTCTAAGGTAAAGAATGCCATACAAATGTGTCCGCCTGGTGGGTAACGAAACACGTGCACTAGTGATAGCAGGTTCGATCGTGCTAGATGGATTAGCTTAGCACCGAGCAACCCCTCGTAACAGTTAGCCGCAAGCCGCAAGTCCGGTGCTGCCAGCCAGCCAGCCAGAACAAATGCCCAACACAATGGCCG-CCACATCAAACCAGCGCATCGAGGACCATCGGAATTTGGCCGACTGGTCGTACTATGCGAACGAAACGGCCGGCGAGGAGTACTACGAGATGCCGATCGATATGCGCTTCAACTCCGGCACATCCTATCGATCATGGTGTACACTACACTGACTCGTGTATTCGGACACGGGCAAACTTTACGGTGCCTCAGCATACTGGCCCAGACGGNAAGCGTGCGCGCCTCGTCCGCGCGATCAAATAATTCATGTTGGCGCATCTAGCCGACTTGCAGATCTTGCTGGTCANCCCTTTTCTCGAGTTGCATTGCCCACTTGGGCAGNNATTTGGGGACCTGCGGGCGGTTACCAACCGCGGTCTCAACAATTGCGAACCGCGGCCCCGGCTGGNTNNTCGACTACGCTGTCCGGNCGTCGACTGGGCCGGTTCCTTC] [+] EMBL AL696313 [ATCGCCACGAGGTTAATTACTCTTAGTGCGTTCAGCCTTCATCATTCTAAGGTAAAGAATGCCATACAAATGTGTCCGCCTGGTGGGTAACGAAACACGTGCACTAGTGATAGCAGGTTCGATCGTGCTAGATGGATTAGCTTAGCACCGAGCAACCCCTCGTAACAGTTAGCCGCAAGCCGCAAGTCCGGTGCTGCCAGCCAGCCAGCCAGAACAAATGCCCAACACAATGGCCG CCACATCAAACCAGCGCATCGAGGACCATCGGAATTTGGCCGACTGGTCGTACTATGCGAACGAAACGGCCGGCGAGGAGTACTACGAGATGCCGATCGATATGCGCTTCAACTCCGGCACATCCTATCGATCATGGTGTACACTACACTGACTCGTGTATTCGGACACGGGCAAACTTTACGGTGCCTCAGCATACTGGCCCAGACGGNAAGCGTGCGCGCCTCGTCCGCGCGATCAAATAATTCATGTTGGCGCATCTAGCCGACTTGCAGATCTTGCTGGTCANCCCTTTTCTCGAGTTGCATTGCCCACTTGGGCAGNNATTTGGGGACCTGCGGGCGGTTACCAACCGCGGTCTCAACAATTGCGAACCGCGGCCCCGGCTGGNTNNTCGACTACGCTGTCCGGNCGTCGACTGGGCCGGTTCCTTC] [+] EMBL BX605457 [ TACTCTTAGTGCGTTCAG TTCATCATTCTAAGG AAAGAATGCCATACAAATGTGTCCGCCTGGTGGGTAACGAAACACGTGCACTAGTGATAGCAGGTTCGATCGTGCTAGATGGATTAGCTTAGCACCGAGCAACCCCTCGTAACAGTTAGCCGCAAGCCGCAAGTCCGGTGCTGCCAGCCAGCCAGCCAGAAC AATGCCCAACACAATGGCCGCCCACATC AACCAGCGCATCGAGGACCATCGGAATTTGGCCGACTGGTCGTACTATGCGAACGAAACGGCCGGCGAGGAGTACTACGAGATGCCGAT ] consensusID : consensus_7439#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [AGAATCGCCACGAGGTCAAACATGTCCGGGTCCGGGGGGAGGCGACGATCGAGCATATATTGCTTGCCGAAGCCTCGGTACAGTTGTGTGCCCGTGTGAACTGCGACATTGACTCTGCGGGTTCGGGGTGTGTGTGTGTGAGTTTGTGTCGTGTTGGGGCTAGGATTGTGAAGGTGCTGTTTTGGAGCACTCACGAGTGTGTCTCTACAAGCAGTCGGCAGGAGTTATCTGGCCGACGAATCTCTCCGAACTCCGAGGGCACTTCACAAAAGTGTAGGAACGTTAGTGGCACATGGTTGGGGCAGGGCAGCGATTTGTGTGCACGGGAAGAATCTCGTAATAGACTGTGAATTACTCTTAGTGCGTTCAGTTCATCATTATAAGGAAAGAATGCCATACAAATGTGTCCGCCTGGTGGTTAACGAAACACGTGCACTAGTGATAGCAGGTTCGATCGTGCTAGATGGATTAGCTTAGCACCGAGCAACCCTTCGTAACACGTGTAGCCGNAAGCCGCGAAGTACGGTGCTGCACAGCAGGCCAGCGCAGGAACAAGTGCCCAACACAATGGCCGGGCCGACANTCTGAACCAGGCAATCGAGGAACATCGGAATTTGGCCGA] [+] EMBL BX469824 [AGAATCGCCACGAGGTCAAACATGTCCGGGTCCGGGGGGAGGCGACGATCGAGCATATATTGCTTGCCGAAGCCTCGGTACAGTTGTGTGCCCGTGTGAACTGCGACATTGACTCTGCGGGTTCGGGGTGTGTGTGTGTGAGTTTGTGTCGTGTTGGGGCTAGGATTGTGAAGGTGCTGTTTTGGAGCACTCACGAGTGTGTCTCTACAAGCAGTCGGCAGGAGTTATCTGGCCGACGAATCTCTCCGAACTCCGAGGGCACTTCACAAAAGTGTAGGAACGTTAGTGGCACATGGTTGGGGCAGGGCAGCGATTTGTGTGCACGGGAAGAATCTCGTAATAGACTGTGAATTACTCTTAGTGCGTTCAGTTCATCATTATAAGGAAAGAATGCCATACAAATGTGTCCGCCTGGTGGTTAACGAAACACGTGCACTAGTGATAGCAGGTTCGATCGTGCTAGATGGATTAGCTTAGCACCGAGCAACCCTTCGTAACACGTGTAGCCGNAAGCCGCGAAGTACGGTGCTGCACAGCAGGCCAGCGCAGGAACAAGTGCCCAACACAATGGCCGGGCCGACANTCTGAACCAGGCAATCGAGGAACATCGGAATTTGGCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7439#1 ------------------------------------------------------------ consensus_7439#2 ------------------------------------------------------------ consensus_7439#0 CCGCACTAATCGATCGAGCGCTCACGAGCGCACGAGAACGGACCGGTGTGGTGGTGGTGC 60 consensus_7439#1 ------------------------------------------------------ATCGCC 6 consensus_7439#2 ---------------------------------------------------AGAATCGCC 9 consensus_7439#0 TCAGGGAAACCGTGCGGCAGTAGCAGTACATCGGCCGTACCTACATCAACCATCGTCGCG 120 **** consensus_7439#1 ACGAGG-TTAATTAC-TCTTAGTGCGTTCAGCCTTCATCATTCTAAG-GTAAAGAATGCC 63 consensus_7439#2 ACGAGG-TCAAACATGTCCGGGTCCGGGGGGAGGCGACGATC---GA-GCATATATTGCT 64 consensus_7439#0 GTGTGGCTTCAACTGTTGTACCACTGGCAGGTGGTTGCGATCGTGAATACGTGAATTCAC 180 * ** * * * * * ** * * consensus_7439#1 ATACAAATGTG------------TCCGCCTGGTGGGTAACGAAACACGTGCACTAGT--G 109 consensus_7439#2 -TGCCGAAGCC------------TCGGTACAGTTGTGTGCC---CGTGTGAACT-GC--G 105 consensus_7439#0 TCACAAAAATAGTGAAAAATCAACCACCACAGTTGCTCACTTC-CGGATGCGTTCGCTCG 239 * * * ** * * * ** * * * consensus_7439#1 ATAGCAGGTTCGATCGTGCTAGATGGATTAGCTTAG-CACCGAGCA-ACCCCTCGTAACA 167 consensus_7439#2 ACATTGACTCTGCGGGTTCGGGGTGTGTGTGTGTGA-GTTTGTGT---CGTGTTGGGGCT 161 consensus_7439#0 TTCGTGGAAGATTTGATACGATCGGTGTTTGTGTGATGTGTGTGTTTGCCTGTTTGTGGT 299 * * * * * * * * * * consensus_7439#1 GTTAGCCGCAAGCCGCAAGTCCGGTGCTGCCAGCCAGCCAGCCAGAACAAATGCCCAACA 227 consensus_7439#2 AGGATTGTGAAGGTGCTGTTTTGGAGCACTCA-CGAGTGTGTCTCTACAAGCAGTCGGCA 220 consensus_7439#0 ACAATTTTTTTGATGTTGGTTTG-----CTTA-CTTGTGTGTTAGTGCAGGCA--CGGTA 351 * * * * * * * * * ** * * consensus_7439#1 CAATGGCCGCCACATCAAACCAGCGCATCGAGGACCATCGGAATTTGGCCGACTGGTCGT 287 consensus_7439#2 GGA--GTTATCTGGCCGACGAATCTCTCCGAACTCCGAGGGCACTTCACAAAAGTGTAGG 278 consensus_7439#0 GAG--GTCTCTTCCCACATCGGTCCCTATCAG-TCCGCCCGCCCTGCAAACGCATTAGGG 408 * * * * * ** * * * consensus_7439#1 ACTATGCGAACGAAACGGCCGGCGAGGAGTACTACGAGATGC-CGATCGATATGCGCTTC 346 consensus_7439#2 AACGTTAGTGGCACATGGTTGGGGCAGGGCA--GCGATTTGTGTGCACGGGAAG------ 330 consensus_7439#0 TGCGCGATCAGTTGCTAATCATCGTACAGCCGAAGGATCTATCTCATCCGTACACA---- 464 * * ** * * * consensus_7439#1 AACTCCGGCACATCCTATCGATCATGGTGTA--CACTACACTGA---CTCGTGTATTCGG 401 consensus_7439#2 AATCTCGTAATAGACTGTGAATTACTCT-----TAGTGCGTTCA---GTTCATCATTATA 382 consensus_7439#0 ACCTCCCCCACTTTCCCTCTCTCCCTGTACATCTGATGCATGCATGTGGCGGTGGCGACG 524 * * * * * * * * * * consensus_7439#1 ACACGGGCAAACTTTACGG-T-GCCTCAGCATAC----TGGCCCAGACGGNAAGCGTGCG 455 consensus_7439#2 AGGAAAGAATGCCATACAAAT-GTGTCCGCCTGG----TGGTT--AACGAAACACGTGCA 435 consensus_7439#0 GTGGCAGCACGCCCCATGGACAGAGTAGACCTGGACTATGAGTTGTTTGGCACGCGCTCA 584 * * * * * * * * ** * * ** * consensus_7439#1 CG-CCTCGTCCG--CGCGATCAAATAATTCATGTTGGCGC-ATCTAGCCGACTTGCAGAT 511 consensus_7439#2 CT-AGTGATA-G--CAGGTTCGA-----TCGTGCTAGATG-GATTAGCTTA---GCA--- 479 consensus_7439#0 GTGAGTGTTTCGACCGCGGTCGCACA--TCACAACAACAGTGACCGACCGGAGGGTGGTG 642 * * * * * ** ** * * consensus_7439#1 CTTGCTGGTCANCCCTTTTCTCGAGTTGCATTGCCCACTTGGGCAGNNATTTGGGGACCT 571 consensus_7439#2 ----CCGAGCAACCCTT--CGTAACACGTGTAGCCGN---AAGCCGCGAAGTACGGTGCT 530 consensus_7439#0 TTGGTGGGTGGTGGTTGTGTGTAGCATTATTTATTGGTGGCAGATCAAAACCATGTCCGG 702 * * * * * * consensus_7439#1 GCGGGCGGTTACCAACCGCGGTCTCAACAATTGCGAACCGCGGCCCCGGCTGGNTNNTCG 631 consensus_7439#2 GCA--CAGCAGGCCAGCGCAGGAACAAGTGCCCAACACAATGGCCGGGCCGACANTCTGA 588 consensus_7439#0 GTCCGGGGGGAGGCGACGATCGAGCATATATTGCTTGCCGAAGCCTCGGTACAGTTGTGT 762 * * ** ** * *** * * consensus_7439#1 ACTACGCTGTCCGG--NCGTCG--ACTGGGCCGGTTCCTTC 668 consensus_7439#2 ACCAGGCAATCGAGGAACATCGGAATTTGGCCGA------- 622 consensus_7439#0 GCCCGTGTGAACTGCGACATTG--ACTCTACGGGT------ 795 * * * * * * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||