These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1567 fasta sequence [CCGGGGCGACAGGCGTAACGTGAATCTGGAGGTGGAGTTTGCGCCGGTCGTGACCGTGCCGAGACCGCGCGTCGAGCAGGCCCTGCAGTACGATATGGATCTGGAGTGCCACATCGAGGCGTACCCGCCGCCGGCCATCCGCTGGCTGAAGGATAGCGTGCAGCTGTCCAGCAACCAGCACTACCAGCTGTCCCAGTTTGCGACCGCGGACGAGTTCACCGACTCGACGCTGCGCGTCATCACGGCCGAGAAGCGCCAGTACGGCGAGTACATCTGCCAGGCGACGAACAAGCTGGGCGATGCGGAGGGCCGCGTCGAGTTTACCGAGTCGGTCATTCCCGTGTGCCCGCCGGCCTGTGGGCAGGCACGCTACGGCGGCGGCGCTAGTGCGATTTCCGTCTCGAGCGTCCTGATGGCGGTGGCCACCGTGCTGACGATGGTGGCGATTGCGCAGTACGTGAAGCGAGCATAAGCCACACATTCAGCCGCCGCATTCCAGGAAGAAAAATGAAACACCGAAGTCGAACCAAAACAGAGGAAAGGGACAGAGCAAGAAGCAGAAGCATCACAATCAGGAAAATGTCTTCAATCACCACACCGTTTTGTCGATGCATCAATATTTGATGGAAGGACGATAGCCTCAGGACGACCGATCACTGATCACCGATCATTCAACTGATCGGGGGATGAAATGGAACCAAATCCGGGTCATAAAAGCGTCATATCGAACAACACATCTCTCTTTCTGTAGCACGTTGAGCCAGATTTAGCACATCCAGCAGCACAATCATTCATATACATCCTCAAAAGCAGATCGTAAAAGTGAGCGTAAATAGGGTTTACACTTTTTTGAAGGTTGAGTTTTAGGTCTTTTGACGAATGACGACACCAATTACTACCTAAAATAGTGCCTGAAAGGAAACTTTTTCGAACAATCTTTGTCACTTTGGCCGGGGACCACACATTCTCAAACACATATCGGAACCGGAACAGTACACGGACACGGAGGCGAAGAGTAGGAAGATGAAATAGCAACTTTTCTTTGGAAAATCGGGACATTGATCCAGACGAATGTTTGAGATAGCATGTAAGCAAACAACAAGCAGAAAGTGTGTAAATCGTGCAAAACCTTTTTTTAAATTTATATGCTTTAGAGCATATTGTATTTTGTAAGAGAAGTGGATTCGTATACAGTAAAAATACATACACCAATACATAATTGATTCCCTCCAAGGNATCTGTGAAGATGAGATAGCTCTTGTAGGTGTAGGAACGGGAAGAGAAATGATTGGCTTTTCCCAATATCGGTGGCGCTTGGTTTAAGCGACAATATCGAATGATGGGGAAGTCGATAAGAAGGTAGTCGTAAAGCTTTCTTTTTCGAATCGAGTATAATGTGAACAATAATGCTGGAAGGGAGATAAATGGTTTTATAGGGTGGATGCAGATAGAAGAAAAGCATTCAACAATCGAAAACAAATAATAGAGGCAAGAAAAGTGCTGAAGCTTTTAATATCGCGCTTGTGTATCGATGAACGTTTTCCCCCCAGAAATTACCTCTAAACTT] [+] EMBL BM577655 [CCGGGGCGACAGGCGTAACGTGAATCTGGAGGTGGAGTTTGCGCCGGTCGTGACCGTGCCGAGACCGCGCGTCGAGCAGGCCCTGCAGTACGATATGGATCTGGAGTGCCACATCGAGGCGTACCCGCCGCCGGCCATCCGCTGGCTGAAGGATAGCGTGCAGCTGTCCAGCAACCAGCACTACCAGCTGTCCCAGTTTGCGACCGCGGACGAGTTCACCGACTCGACGCTGCGCGTCATCACGGCCGAGAAGCGCCAGTACGGCGAGTACATCTGCCAGGCGACGAACAAGCTGGGCGATGCGGAGGGCCGCGTCGAGTTTACCGAGTCGGTCATTCCCGTGTGCCCGCCGGCCTGTGGGCAGGCACGCTACGGCGGCGGCGCTAGTGCGATTTCCGTCTCGAGCGTCCTGATGGCGGTGGCCACCGTGCTGACGATGGTGGCGATTGCGCAGTACGTGAAGCGAGCATAAGCCACACATTCAGCCGCCGCATTCCAGGAAGAAAAATGAAACACCGAAGTCGAACCAAAACAGAGGAAAGGGACAGAGCAAGAAGCAGAAGCATCACAATCAGGAAAATGTCTTCAATCACCACACCGTTTTGTCGATGCATCAATATTTGATGGAAGGACGATAGCCTCAGGACGACCGATCACTG ] [+] EMBL BM645068 [ ccgGGCGTAACGTGAATCTGGAGGTGGAGTTTGCGCCGGTCGTGACCGTGCCGAGACCGCGCGTCGAGCAGGCCCTGCAGTACGATATGGATCTGGAGTGCCACATCGAGGCGTACCCGCCGCCGGCCATCCGCTGGCTGAAGGATAGCGTGCAGCTGTCCAGCAACCAGCACTACCAGCTGTCCCAGTTTGCGACCGCGGACGAGTTCACCGACTCGACGCTGCGCGTCATCACGGCCGAGAAGCGCCAG ] [+] EMBL BX618601 [ GGCCACCGTGCTGACGATGGTGGCGATTGCGCAGTACGTGAAGCGAGCATAAGCCACACATTCAGCCGCCGCATTCCAGGAAGAAAAATGAAACACCGAAGTCGAACCAAAACAGAGGAAAGGGACAGAGCAAGAAGCAGAAGCATCACAATCAGGAAAATGTCTTCAATCACCACACCGTTTTGTCGATGCATCAATATTTGATGGAAGGACGATAGCCTCAGGACGACCGATCACTGATCACCGATCATTCAACTGATCGGGGGATGAAATGGAACCAAATCCGGGTCATAAAAGCGTCATATCGAACAACACATCTCTCTTTCTGTAGCACGTTGAGCCAGATTTAGCACATCCAGCAGCACAATCATTCATATACATCCTCAAAAGCAGATCGTAAAAGTGAGCGTAAATAGGGTTTACACTTTTTTGAAGGTTGAGTTTTAGGTCTTTTGACGAATGACGACACCAATTACTACCTAAAATAGTGCCTGAAAGGAAACTTTTTCGAACAATCTTTGTCACTTTGGCCGGGGACCACACATTCTCAAACACATATCGGAACCGGAACAGTACACGGACACGGAGGCGAAGAGT ] [+] EMBL BX605894 [ GAAGCAGAAGCATCACAATCAGGAAAATGTCTTCAATCACCACACCGTTTTGTCGATGCATCAATATTTGATGGAAGGACGATAGCCTCAGGACGACCGATCACTGATCACCGATCATTCAACTGATCGGGGGATGAAATGGAACCAAATCCGGGTCATAAAAGCGTCATATCGAACAACACATCTCTCTTTCTGTAGCACGTTGAGCCAGATTTAGCACATCCAGCAGCACAATCATTCATATACATCCTCAAAAGCAGATCGTAAAAGTGAGCGTAAATAGGTTTTACACTTTTTTGAAGGTTGAGTTTTAGGTCTTTTGACGAATGACGACACCAATTACTACCTAAAATAGTGCCTGAAAGGAAACTTTTTCGAACAATCTTTGTCACTTTGGCCGGGGACCACACATTCTCAAACACATATCGGAACCGGAACAGTACACGGACACGGAGGCGAAGAGTAGGAAGATGAAATAGCAACTTTTCTTTGGAAAATCGGGACATTGATCCAGACGAATGTTTGAGATAGCATGTAAGCAAACAACAAGCAGAAAGTGTGTAAATCGTGCAAAACCTTTTTTT ] [+] EMBL BX628902 [ TTACTACCTAAAATAGTGCCTGAAAGGAAACTTTTTCGAACAATCTTTGTCACTTTGGCCGGGGACCACACATTCTCAAACACATATCGGAACCGGAACAGTACACGGACACGGAGGCGAAGAGTAGGAAGATGAAATAGCAACTTTTCTTTGGAAAATCGGGACATTGATCCAGACGAATGTTTGAGATAGCATGTAAGCAAACAACAAGCAGAAAGTGTGTAAATCGTGCAAAACCTTTTTTTAAATTTATATGCTTTAGAGCATATTGTATTTTGTAAGAGAAGTGGATTCGTATACAGTAAAAATACATACACCAATACATAATTGATTCCCTCCAAGGNATCTGTGAAGATGAGATAGCTCTTGTAGGTGTAGGAACGGGAAGAGAAATGATTGGCTTTTCCCAATATCGGTGGCGCTTGGTTTAAGCGACAATATCGAATGATGGGGAAGTCGATAAGAAGGTAGTCGTAAAGCTTTCTTTTTCGAATCGAGTATAATGTGAACAATAATGCTGGAAGGGAGATAAATGGTTTTATAGGGTGGATGCAGATAGAAGAAAAGCATTCAACAATCGAAAACAAATAATAGAGGCAAGAAAAGTGCTGAAGCTTTTAATATCGCGCTTGTGTATCGATGAACGTTTTCCCCCCAGAAATTACCTCTAAACTT] consensusID : consensus_7444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [GCACATGCTGCCTTGTTNTTTGNATTTTTTTAGTGCGATTTCCGTCTCGAGCGTCCTGATGGCGGTGGCCACCGGTGCTGACGATGGTGGCGATTGCGCAGTACGTGAAGCGAGCATAAGCCACACATTCAGCCGCCGCATTCCAGGAAGAAAAATGAAACACCGAAGTCGAACCAAAACAGAGGAAAGGGACAGAGCAAGAAGCAGAAGCATCACAATCAGGAAAATGTCTTCAATCACCACACCGTTTTGTCGATGCATCAATATTTGATGGAAGGACGATAGCCTCAGGACGACCGATCACTGATCACCGATCATTCAACTGATCGGGGGATGAAATGGAACCAAATCCGGGTCATAAAAGCGTCATATCGAACAACACATCTCTCTTTCTGTAGCACGTTGAGCCAGATTTAGCACATCCAGCAGCACAATCATTCATATACATCCTCAAAAGCAGATCGTAAAAGTGAGCGTAAATGGGGTTTACACTTTATTTGAAGGTTGAGTTTTAGGTCTTTTGACGAATGACGACACCAATTACTACCTAAAATAGTGCCTGAAAGGAAACTTTTTACGAACAATCTTTGTCACTTTGGCCGGGGACCACACATTCTCAAAGC] [+] EMBL BX466682 [GCACATGCTGCCTTGTTNTTTGNATTTTTTTAGTGCGATTTCCGTCTCGAGCGTCCTGATGGCGGTGGCCACCGGTGCTGACGATGGTGGCGATTGCGCAGTACGTGAAGCGAGCATAAGCCACACATTCAGCCGCCGCATTCCAGGAAGAAAAATGAAACACCGAAGTCGAACCAAAACAGAGGAAAGGGACAGAGCAAGAAGCAGAAGCATCACAATCAGGAAAATGTCTTCAATCACCACACCGTTTTGTCGATGCATCAATATTTGATGGAAGGACGATAGCCTCAGGACGACCGATCACTGATCACCGATCATTCAACTGATCGGGGGATGAAATGGAACCAAATCCGGGTCATAAAAGCGTCATATCGAACAACACATCTCTCTTTCTGTAGCACGTTGAGCCAGATTTAGCACATCCAGCAGCACAATCATTCATATACATCCTCAAAAGCAGATCGTAAAAGTGAGCGTAAATGGGGTTTACACTTTATTTGAAGGTTGAGTTTTAGGTCTTTTGACGAATGACGACACCAATTACTACCTAAAATAGTGCCTGAAAGGAAACTTTTTACGAACAATCTTTGTCACTTTGGCCGGGGACCACACATTCTCAAAGC] consensusID : consensus_7444#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [CCGCCCGCGCGTCCGAATGGAACCAAATCCGGTTCATAAAAGCGTCATATCGAACAACACATCTCTCTTTCTGTAGCACGTTGAGCCAGATTTAGCACATCCAGCAGCACAATCATTCATATACATCCTCAAAAGCAGATCGTAAAAGTGAGCGTAAATAGGGTTTACGCTTTTTTGAAGGTTGAGTTTTAGGTCTTTTGACGAATGACGACACCAATTACTACCTAAAATAGTGCCTGAAAGGAAACTTTTTCGAACAATCTTTGTCACTTTGGCCGGGGACCACACATTCTCAAACACATATCGGAACCGGAACAGTACGCGGACACGGAGGCGAAGAGTAAGAAGATGAAATAGCAACTTTTCTTTGGAAAATCGGGACATTGGTCCA] [+] EMBL BM577579 [CCGCCCGCGCGTCCGAATGGAACCAAATCCGGTTCATAAAAGCGTCATATCGAACAACACATCTCTCTTTCTGTAGCACGTTGAGCCAGATTTAGCACATCCAGCAGCACAATCATTCATATACATCCTCAAAAGCAGATCGTAAAAGTGAGCGTAAATAGGGTTTACGCTTTTTTGAAGGTTGAGTTTTAGGTCTTTTGACGAATGACGACACCAATTACTACCTAAAATAGTGCCTGAAAGGAAACTTTTTCGAACAATCTTTGTCACTTTGGCCGGGGACCACACATTCTCAAACACATATCGGAACCGGAACAGTACGCGGACACGGAGGCGAAGAGTAAGAAGATGAAATAGCAACTTTTCTTTGGAAAATCGGGACATTGGTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7444#0 CCGGGGCGACAGGCGTAACGTGAATCTGGAGGTGGAGTTTGCGCCGGTCGTGACCGTGCC 60 consensus_7444#2 ------------------------------------------------------------ consensus_7444#1 ------------------------------------------------------------ consensus_7444#0 GAGACCGCGCGTCGAGCAGGCCCTGCAGTACGATATGGATCTGGAGTGCCACATCGAGGC 120 consensus_7444#2 ------------------------------------------------------------ consensus_7444#1 ------------------------------------------------------------ consensus_7444#0 GTACCCGCCGCCGGCCATCCGCTGGCTGAAGGATAGCGTGCAGCTGTCCAGCAACCAGCA 180 consensus_7444#2 ------------------------------------------------------------ consensus_7444#1 ------------------------------------------------------------ consensus_7444#0 CTACCAGCTGTCCCAGTTTGCGACCGCGGACGAGTTCACCGACTCGACGCTGCGCGTCAT 240 consensus_7444#2 ------------------------------------------------------------ consensus_7444#1 ------------------------------------------------------------ consensus_7444#0 CACGGCCGAGAAGCGCCAGTACGGCGAGTACATCTGCCAGGCGACGAACAAGCTGGGCGA 300 consensus_7444#2 ------------------------------------------------------------ consensus_7444#1 ------------------------------------------------------------ consensus_7444#0 TGCGGAGGGCCGCGTCGAGTTTACCGAGTCGGTCATTCCCGTGTGCCCGCCGGCCTGTGG 360 consensus_7444#2 ------------------------------------------------------------ consensus_7444#1 -----------------------------------------------------GCACATG 7 consensus_7444#0 GCAGGCACGCTACGGCGGCGGCGCTAGTGCGATTTCCGTCTCGAGCGTCCTGATGGCGGT 420 consensus_7444#2 ------------------------------------------------------------ consensus_7444#1 CTGCCTTGTTNTTTGNATTTTTTTAGTGCGATTTCCGTCTCGAGCGTCCTGATGGCGGTG 67 consensus_7444#0 GGCCACCGTGCTGACGATGGTGGCGATTGCGCAGTACGTGAAGCGAGCATAAGCCACACA 480 consensus_7444#2 ------------------------------------------------------------ consensus_7444#1 GCCACCGGTGCTGACGATGGTGGCGATTGCGCAGTACGTGAAGCGAGCATAAGCCACACA 127 consensus_7444#0 TTCAGCCGCCGCATTCCAGGAAGAAAAATGAAACACCGAAGTCGAACCAAAACAGAGGAA 540 consensus_7444#2 ------------------------------------------------------------ consensus_7444#1 TTCAGCCGCCGCATTCCAGGAAGAAAAATGAAACACCGAAGTCGAACCAAAACAGAGGAA 187 consensus_7444#0 AGGGACAGAGCAAGAAGCAGAAGCATCACAATCAGGAAAATGTCTTCAATCACCACACCG 600 consensus_7444#2 ------------------------------------------------------------ consensus_7444#1 AGGGACAGAGCAAGAAGCAGAAGCATCACAATCAGGAAAATGTCTTCAATCACCACACCG 247 consensus_7444#0 TTTTGTCGATGCATCAATATTTGATGGAAGGACGATAGCCTCAGGACGACCGATCACTGA 660 consensus_7444#2 ------------------------------------------------------------ consensus_7444#1 TTTTGTCGATGCATCAATATTTGATGGAAGGACGATAGCCTCAGGACGACCGATCACTGA 307 consensus_7444#0 TCACCGATCATTCAACTGATCGGGGGATGAAATGGAACCAAATCCGGGTCATAAAAGCGT 720 consensus_7444#2 ---------------CCGCCCGCGCGTCCGAATGGAACCAAATCCGGTTCATAAAAGCGT 45 consensus_7444#1 TCACCGATCATTCAACTGATCGGGGGATGAAATGGAACCAAATCCGGGTCATAAAAGCGT 367 * * ** * * ***************** ************ consensus_7444#0 CATATCGAACAACACATCTCTCTTTCTGTAGCACGTTGAGCCAGATTTAGCACATCCAGC 780 consensus_7444#2 CATATCGAACAACACATCTCTCTTTCTGTAGCACGTTGAGCCAGATTTAGCACATCCAGC 105 consensus_7444#1 CATATCGAACAACACATCTCTCTTTCTGTAGCACGTTGAGCCAGATTTAGCACATCCAGC 427 ************************************************************ consensus_7444#0 AGCACAATCATTCATATACATCCTCAAAAGCAGATCGTAAAAGTGAGCGTAAATAGGGTT 840 consensus_7444#2 AGCACAATCATTCATATACATCCTCAAAAGCAGATCGTAAAAGTGAGCGTAAATAGGGTT 165 consensus_7444#1 AGCACAATCATTCATATACATCCTCAAAAGCAGATCGTAAAAGTGAGCGTAAATGGGGTT 487 ****************************************************** ***** consensus_7444#0 TACACTTT-TTTGAAGGTTGAGTTTTAGGTCTTTTGACGAATGACGACACCAATTACTAC 899 consensus_7444#2 TACGCTTT-TTTGAAGGTTGAGTTTTAGGTCTTTTGACGAATGACGACACCAATTACTAC 224 consensus_7444#1 TACACTTTATTTGAAGGTTGAGTTTTAGGTCTTTTGACGAATGACGACACCAATTACTAC 547 *** **** *************************************************** consensus_7444#0 CTAAAATAGTGCCTGAAAGGAAACTTTTT-CGAACAATCTTTGTCACTTTGGCCGGGGAC 958 consensus_7444#2 CTAAAATAGTGCCTGAAAGGAAACTTTTT-CGAACAATCTTTGTCACTTTGGCCGGGGAC 283 consensus_7444#1 CTAAAATAGTGCCTGAAAGGAAACTTTTTACGAACAATCTTTGTCACTTTGGCCGGGGAC 607 ***************************** ****************************** consensus_7444#0 CACACATTCTCAAACACATATCGGAACCGGAACAGTACACGGACACGGAGGCGAAGAGTA 1018 consensus_7444#2 CACACATTCTCAAACACATATCGGAACCGGAACAGTACGCGGACACGGAGGCGAAGAGTA 343 consensus_7444#1 CACACATTCTCAAAGC-------------------------------------------- 623 ************** consensus_7444#0 GGAAGATGAAATAGCAACTTTTCTTTGGAAAATCGGGACATTGATCCAGACGAATGTTTG 1078 consensus_7444#2 AGAAGATGAAATAGCAACTTTTCTTTGGAAAATCGGGACATTGGTCCA------------ 391 consensus_7444#1 ------------------------------------------------------------ consensus_7444#0 AGATAGCATGTAAGCAAACAACAAGCAGAAAGTGTGTAAATCGTGCAAAACCTTTTTTTA 1138 consensus_7444#2 ------------------------------------------------------------ consensus_7444#1 ------------------------------------------------------------ consensus_7444#0 AATTTATATGCTTTAGAGCATATTGTATTTTGTAAGAGAAGTGGATTCGTATACAGTAAA 1198 consensus_7444#2 ------------------------------------------------------------ consensus_7444#1 ------------------------------------------------------------ consensus_7444#0 AATACATACACCAATACATAATTGATTCCCTCCAAGGNATCTGTGAAGATGAGATAGCTC 1258 consensus_7444#2 ------------------------------------------------------------ consensus_7444#1 ------------------------------------------------------------ consensus_7444#0 TTGTAGGTGTAGGAACGGGAAGAGAAATGATTGGCTTTTCCCAATATCGGTGGCGCTTGG 1318 consensus_7444#2 ------------------------------------------------------------ consensus_7444#1 ------------------------------------------------------------ consensus_7444#0 TTTAAGCGACAATATCGAATGATGGGGAAGTCGATAAGAAGGTAGTCGTAAAGCTTTCTT 1378 consensus_7444#2 ------------------------------------------------------------ consensus_7444#1 ------------------------------------------------------------ consensus_7444#0 TTTCGAATCGAGTATAATGTGAACAATAATGCTGGAAGGGAGATAAATGGTTTTATAGGG 1438 consensus_7444#2 ------------------------------------------------------------ consensus_7444#1 ------------------------------------------------------------ consensus_7444#0 TGGATGCAGATAGAAGAAAAGCATTCAACAATCGAAAACAAATAATAGAGGCAAGAAAAG 1498 consensus_7444#2 ------------------------------------------------------------ consensus_7444#1 ------------------------------------------------------------ consensus_7444#0 TGCTGAAGCTTTTAATATCGCGCTTGTGTATCGATGAACGTTTTCCCCCCAGAAATTACC 1558 consensus_7444#2 ------------------------------------------------------------ consensus_7444#1 ------------------------------------------------------------ consensus_7444#0 TCTAAACTT 1567 consensus_7444#2 --------- consensus_7444#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||