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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1155 fasta sequence
[CCGGGACTCCATCAATAGATTAGAAATGTGTTTTCCGTTTTGTTTGTTTCTAATTTATAAAGCAAACAGACGAAACTCTACCGCAACTGAGAAAGGTTTCTCCAACAAAAAAACAAACCCAATAAAACACTGACAAATACACCACAACGGAAGCGGTGAGGAGATTTTGATTTTGCCAAGCCTTTTGCAAGGGCTTGCACAGGGACGAGTTGCTAAATATGTTTTTAGCTGTAATTACGAACTGCGCTTGAGCACAAAAGGTGCGGCCAGCAGTGATGATGGAAGGCACGAGAAGTTTAAAATCTCCCCTTCAACTTGAATCATAAACTTTAACCGACCGATGGTCAATTCTAATCTCTCTGTCTAATGATCCAAATCACAAAACATAAGCGAAAACAAAAAGAATAAAGAGTGAGAGTGAATGACCAAAAAGAAGAAAAGCACACAAACACACCCCCACACAGAACAAAGGAGTGGAAACAACTTTTTAGCAAATTTGAATGTGAAAAGCAGCGTTTTGTTTAACAATTGGGCTAAAATGAAT-AAAAGAGAGTACGTAACGGTGAGTGATGATAGCACATAACACGCAACGCAACCAACACACAACACAGTGACCAAACACACACAAAAAAAACGTACGCGACATGTTTTCGTTTAAAAGAAACAAAAAA-AAACAAAACAAAGAAAGTGGATAAAGAACCGCAAGACAAGTGAAAAGAAACAAATAACTATATTCAACTTATACAAGGGATTTATAACATATTAAGGTAGTCAAAAAGAAGAAGAAAAACGGAGAGGAAAGAGGAAGTGAAGAAGAAGCAAACACCTTTGCAAAAATCGAACATTAAAGTATGAAAACAATGACCCATTAACAGGCAAAATTGTATTTTAGATAACAAAAGCAACTAAAATAATGGAAAAAACAGAGAGACATGTGTTTAAGTGGCAAGATTAAGCTAAACAAGAAGTAAAACA----AAAAAC-AAAAACTAGCAAGTAAGACGAAACAAAGCAAAGCATAAACTTTAAAGTGT-AAAGGGAAAGAAGAAGGAAGGAACACAAAACATACATTAAACATGTGAGAAAGTAAGAGAAAACAAATTGTCAAAGCACACATTCAAAAAAAAAAAAAAAAGAAAGAGACATCGTCACGTAGAG]
[+] EMBL BM639360 [CCGGGACTCCATCAATAGATTAGAAATGTGTTTTCCGTTTTGTTTGTTTCTAATTTATAAAGCAAACAGACGAAACTCTACCGCAACTGAGAAAGGTTTCTCCAACAAAAAAACAAACCCAATAAAACACTGACAAATACACCACAACGGAAGCGGTGAGGAGATTTTGATTTTGCCAAGCCTTTTGCAAGGGCTTGCACAGGGACGAGTTGCTAAATATGTTTTTAGCTGTAATTACGAACTGCGCTTGAGCACAAAAGGTGCGGCCAGCAGTGATGATGGAAGGCACGAGAAGTTTAAAATCTCCCCTTCAACTTGAATCATAAACTTTAACCGACCGATGGTCAATTCTAATCTCTCTGTCTAATGATCCAAATCACAAAACATAAGCGAAAACAAAAAGAATAAAGAGTGAGAGTGAATGACCAAAAAGAAGAAAAGCACACAAACACACCCCCACACAGAACAAAGGAGTGGAAACAACTTTTTAGCAAATTTGAATGTGAAAAGCAGCGTTTTGTTTAACAATTGGGCTAAAATGAAT AAAAGAGAGTACGTAACGGTGAGTGATGATAGCACATAACACGCAACGCAACCAACACACAA ]
[+] EMBL BM630962 [ ccGCAAATTTGAATGTGAAAAGCAGCGTTTTGTTTAACAATTGGGCTAAAATGAATGAAAAG GAGTACGTAACGGTGAGTGATGATAGCACATAACACGCAACGCAACCAACACACAACACAGTGACCAAACACACACAAAAAAAACGTACGCGACATGTTTTCGTTTAAAAGAAACAAAAAA AAACAAAACAAAGAAAGTGGATAAAGAACCGCAAGACAAGTGAAAAGAAACAAATAACTATATTCAACTTATACAAGGGATTTATAACATATTAAGGTAGTCAAAAAGAAGAAGAAAAACGGAGAGGAAAGAGGAAGTGAAGAAGAAGCAAACACCTTTGCAAAAATCGAACATTAAAGTATGAAAACAATGACCCATTAACAGGCAAAATTGTATTTTAGATAACAAAAGCAACTAAAATAATGAAAAAAACAGAGAGACATGTGTTTAAGTGGCAAGATAAAGCTAAACAAGAAGTAAAAAAAAACAAAAACAAAAAACTAGCAAGTAAGAGGAAACAAAGCAAAGCATAAACTTTAAAGTGTAAAAGGGAAAGAAGAAGTAAGGAACACAAAACA ]
[+] EMBL BM604997 [ ccgAACACAGTGACCAAACACACAAAAAAAAAACGTACGCGACATGTTTTCTTTTAAAAGAAAAAAAAAACAAACAAAACAAAGAAAGTGGAAAAAGAACCGCAAGACAAGTGAAAAGAAACAAATAACTATATTCAACTTATACAAGGGATTTATAACATATTAAGGTAGTCAAAAAGAAGAAGAAAAACGAAGAGGAAAGAGGAAGTGAAGAAGAAGCAAACACCTTTGCAAAAATCGAACATTAAAGTATGAAAACAATGACCCATTAACAGGCAAAATTGTATTTTAGATAACAAAAGCAACTAAAATAATGGAAAAAACAGAGAGACATGTGTTTAAGTGGCAAGATTAAGCTAAACAAGAAGTAAAACA AAAAAC AAAAACTAGCAAGTAAGACGAAACAAAGCAAAGCATAAACTTTAAAGTGT AAAGGGAAAGAAGAAGGAAGGAACACAAAACATACATTAAACATGTGAGAAAGTAAGAGAAAACAAATTGTCAAAGCACACATTCAAAAAAAAAAAAAAAAGAAAGAGACATCGTCACGTAGAG]
[+] EMBL BX625421 [ TAAAATAATGGAAAAAACAGAGAGACATGTGTTTAAGTGGCAAGATTAAGCTAAACAAGAAGTAAAACA AAAAAC AAAAACTAGCAAGTAAGACGAAACAAAGCAAAGCATAAACTTTAAAGTGT AAAGGGAAAGAAGAAGGAAGGAACACAAAACATACATTAAACATGTGAGAAAGTAAGAGAAAACAAATTGTCAAA ]
consensusID : consensus_7446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 831 fasta sequence
[CCGGATCCTTCCGGCATAGCATTTGGACTGTTTTGCATATATTTGCCTTAGCCCCGACTCTGCGTTTGTCTGTGTGTGTGTGTGTTCTGTGGCAGAGTGCACAGATCCATTGGCGCTTCGGGGGGGAAAAAGAACCGCATTTCCTAGAGGGGCAACGACGAGGAATAAGATAACAAAAACAAAAGTAAAAACATCATTGCAAACGATAGTTTAGGATTTTGTAGCATACGTAAAACTGTGGAAGCATGAAAGCAGGAAGGGATGACAGGGAGAAAGCACGTCAACCAATTTGTAAGTGATGCAAAACTAGCATTGAAAAAGAAAGAAAAAGAAGAAGAAGTAGAAGAATAATAAG------AATAATAATAATAATAAGAAGAAGAAGAAAACAGTGACATTAACGCAGTGCAGATGAAGAAAAACTAACAAACAAACAAACAAACAAAACACACACACACACAACCTAACCAGAATAGATGCAAACACAACACTGTAGCAAACCAAAATGTGCAAAGCGAAGGAAGAAGCGATTTGAAGGGTGTGTATCAACTTAGAGAATTATTTACAAACCGTTGTTGTAAGGAATCATGTGTAAGGCTCCAAAGAAAGGTGGACAAACAAAGTGAGGGAAGACGAAACAAAAACTAAACAAAAAAAAAAGGATGATAGGATGATAAAAACAAAACAGAAAATGGAGCAGCAGACGTTTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCAAAAGCGACTCCTTGGGAATGGTTTTTCTGTCCTTTGCGCAGCGCTGTCCTGTGCTCGCGATTTTTAGATTTTTTTTTCAATGTCTCCTC]
[+] EMBL BM589568 [CCGGATCCTTCCGGCATAGCATTTGGACTGTTTTGCATATATTTGCCTTAGCCCCGACTCTGCGTTTGTCTGTGTGTGTGTGTGTTCTGTGGCAGAGTGCACAGATCCATTGGCGCTTCGGGGGGGAAAAAGAACCGCATTTCCTAGAGGGGCAACGACGAGGAATAAGATAACAAAAACAAAAGTAAAAACATCATTGCAAACGATAGTTTAGGATTTTGTAGCATACGTAAAACTGTGGAAGCATGAAAGCAGGAAGGGATGACAGGGAGAAAGCACGTCAACCAATTTGTAAGTGATGCAAAACTAGCATTGAAAAAGAAAGAAAAAGAAGAAGAAGTAGAAGAATAATAAG AATAATAATAATAATAAGAAGAAGAAGAAAACAGTGACATTAACGCAGTGCAGATGAAGAAAAACTAACAAACAAACAAACAAACAAAACACACACACACACAACCTAACCAGAATAGATGCAAACACAACACTGTAGCAAACCAAAATGTGCAAAGCGAAGGAAGAAGCGATTTGAAGGGTGTGTATCAACTTAGAGAATTATTTACAAACCGTTGTTGTAAGGAATCATGTGTAAGGCTCCAAAGAAAGGTGGACAAACAAAGTGAGGGAAGACGAAACAAAAACTAAACAAAAAAAAAAGGATGAT ]
[+] EMBL BM638992 [ ccgAAAAACATCATTGCAAACGATAGTTTAGGATTTTGTAGCATACGTAAAACTGTGGAAGCATGAAAGCAGGAAGGGATGACAGGGAGAAAGCACGTCAACCAATTTGTAAGTGATGCAAAACTAGCATTGAAAAAGAAAGAAAAAGAAGAAGTAGTAGAAGAATAATAAGAATAATAATAATAATAATAATAAGAAGAAGAAGAAAACAGTGACATTAACGCAGAGCAGATGAAGAAACACTAACAAACAAACAAACAAACAAAACACACACACACACAACCTAACCAGAATAGATGCAAACACAACACTGTAGCAAACCAAAATGTGCAAAGCGAAGGAAGAAGCGATTTGAAGGGTGTGTATCAACTTAGAGAATTATTTACAAACCGTTGTTGTAAGGAATCGTGTGTAAGGCTCCAAAGAAAGGTGGACAAACAAAGTGAAGGAAGACGAAACAAAAACTAAACAAAAAACAAAAAAAAAAAGGATGATAAAAACAAAACAGAAAATGGAGCAGCAGACGTTTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCAAAAGCGACTCCTTGGGAATGGTTTTTCTGTCCTTTGCGCAGCGCTGTCCTGTGCTCGCGATTTTTAGATTTTTTTTTCAATGTCTCCTC]
consensusID : consensus_7446#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence
[CCGAAAAGGTGCGACCAGCAGTGATGATGGAAGGCACGAGAAGATTAAAATCTCCCCTTCGATTTGAAATATAAACTTTAACCGACCGATGGTCAATTCTAATCTCTCTGTCTAATGATCCAAATCACAAAACATAAGCGAAAACAAAAAGAATAAAGAGTGAGAGTGAATGACCAAAAAAGAAGAAAAGCACACAAACACACCCCCACACAGAACAAAGGAGTGGAAACAACTTTTTAGCAAATTTGAATGTGAAAAGCAGCGTTTTGTTTAACAATTGGGCTAAAATGAATGAAAAGGAGTACGTAACGGTGAGTGATGATAGCACATAACACGCAACGCAACCAACACACAACACAGTGACCAAACACACACAAAAAAAACGTACGCGACATGTTTTCGTTTAAAAGAAACAAAAAAAAACAAAACAAAGAAAGTGGAAAAAGAACCGCATTTCCTAGAGGGGCAACGACGAGGAATAAGATAACAAAAACAAAAGTAAAAACATCATTGCAAACGATAGTTTAGGATTTTGTAGCATACGTAAAACTGTGGAAGCATGAAAGCAGGAAGGGATGACAGGGAGAAAGCACGTCAACCCAATTTGTAAGTGATGCAAA]
[+] EMBL BM627703 [CCGAAAAGGTGCGACCAGCAGTGATGATGGAAGGCACGAGAAGATTAAAATCTCCCCTTCGATTTGAAATATAAACTTTAACCGACCGATGGTCAATTCTAATCTCTCTGTCTAATGATCCAAATCACAAAACATAAGCGAAAACAAAAAGAATAAAGAGTGAGAGTGAATGACCAAAAAAGAAGAAAAGCACACAAACACACCCCCACACAGAACAAAGGAGTGGAAACAACTTTTTAGCAAATTTGAATGTGAAAAGCAGCGTTTTGTTTAACAATTGGGCTAAAATGAATGAAAAGGAGTACGTAACGGTGAGTGATGATAGCACATAACACGCAACGCAACCAACACACAACACAGTGACCAAACACACACAAAAAAAACGTACGCGACATGTTTTCGTTTAAAAGAAACAAAAAAAAACAAAACAAAGAAAGTGGAAAAAGAACCGCATTTCCTAGAGGGGCAACGACGAGGAATAAGATAACAAAAACAAAAGTAAAAACATCATTGCAAACGATAGTTTAGGATTTTGTAGCATACGTAAAACTGTGGAAGCATGAAAGCAGGAAGGGATGACAGGGAGAAAGCACGTCAACCCAATTTGTAAGTGATGCAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7446#0 CCGGGACTCCATCAATAGATTAGAAATGTGTTTTCCGTTTTGTTTGTTTCTAATTTATAA 60
consensus_7446#2 ------------------------------------------------------------
consensus_7446#1 ------------------------------------------------------------
consensus_7446#0 AGCAAACAGACGAAACTCTACCGCAACTGAGAAAGGTTTCTCCAACAAAAAAACAAACCC 120
consensus_7446#2 ------------------------------------------------------------
consensus_7446#1 ------------------------------------------------------------
consensus_7446#0 AATAAAACACTGACAAATACACCACAACGGAAGCGGTGAGGAGATTTTGATTTTGCCAAG 180
consensus_7446#2 ------------------------------------------------------------
consensus_7446#1 ----------------------------------------------CCGGATCCTTCCGG 14
consensus_7446#0 CCTTTTGCAAGGGCTTGCACAGGGACGAGTTGCTAAATATGTTTTTAGCTGTAATTACGA 240
consensus_7446#2 ------------------------------------------------------------
consensus_7446#1 CATAGCATTTGGACTGTTTTGCATATATTTGCCTTAGCCCCGACTCTGCGTTTGTCTGTG 74
consensus_7446#0 ACTGCGCTTGAGCACAAAAGGTGCGGCCAG---CAGTGATGATGGAAGGCACGAGAAGTT 297
consensus_7446#2 ------------CCGAAAAGGTGCGACCAG---CAGTGATGATGGAAGGCACGAGAAGAT 45
consensus_7446#1 TGTGTGTGTGTTCTGTGGCAGAGTGCACAGATCCATTGGCGCTTCGGGGGGGAAAAAGAA 134
* * * * *** ** ** * * ** * ***
consensus_7446#0 TAAAATCTCCCCTTCAACTTGAATCATAAACTTTAACCGACCGATGGTCAATTCTAATCT 357
consensus_7446#2 TAAAATCTCCCCTTCGATTTGAAATATAAACTTTAACCGACCGATGGTCAATTCTAATCT 105
consensus_7446#1 CCGCATTTCCTAGAGGGGCAACGACG-AGGAATAAGATAACAAAAACAAAAGTAAAAACA 193
** *** * * * ** * ** * ** *
consensus_7446#0 CTCTGTCTAATGATCCAAATCACAAAACATAAGCGAAAACAAAAAGAATAAAGAGTGAGA 417
consensus_7446#2 CTCTGTCTAATGATCCAAATCACAAAACATAAGCGAAAACAAAAAGAATAAAGAGTGAGA 165
consensus_7446#1 TCATTGCAAACGAT--AGTTTAGGATTTTGTAGCATACGTAAAACTGTGGAAGCATGAAA 251
* * ** *** * * * * *** * **** *** *** *
consensus_7446#0 GTGAATGACCAAAAA-GAAGAAAAGCACACAAACACACCCCCACACAGAACAAAGGAGTG 476
consensus_7446#2 GTGAATGACCAAAAAAGAAGAAAAGCACACAAACACACCCCCACACAGAACAAAGGAGTG 225
consensus_7446#1 GCAGGAAGGGATGACAGGGAGAAAGCACGTCAACCAATTTGTAAGTGATGCAAA------ 305
* * * * ******* *** * * ****
consensus_7446#0 GAAACAACTTTTTAGCAAATTTGAATGTGAAAAGCAGCGTTTTGTTTAACAATTGGGCTA 536
consensus_7446#2 GAAACAACTTTTTAGCAAATTTGAATGTGAAAAGCAGCGTTTTGTTTAACAATTGGGCTA 285
consensus_7446#1 ---ACTAGCATTGAAAAAGAAAGAAAAAGAAGAAGAAGTAGAAGAATAATAAGAATAATA 362
** * ** * ** *** *** * * * *** ** **
consensus_7446#0 AAATGAATAAAAGAGAGTACGTAACGGTGAGTGATGATAGCACATAACACGCAACGCAAC 596
consensus_7446#2 AAATGAATGAAAAGGAGTACGTAACGGTGAGTGATGATAGCACATAACACGCAACGCAAC 345
consensus_7446#1 ATAATAATAAGAAGAAGAAGAAAACAGTGAC--ATTAACGCAGTGCAGATGAAGAAAAAC 420
* * *** * * ** * *** **** ** * *** * * * * ***
consensus_7446#0 CAACACACAA-CACAGTGACCAAACACACACAAAAAAAACGTACGCGACATGTTTTCGTT 655
consensus_7446#2 CAACACACAA-CACAGTGACCAAACACACACAAAAAAAACGTACGCGACATGTTTTCGTT 404
consensus_7446#1 TAACAAACAAACAAACAAACAAAACACACACACACACAACCTAACCAGAATAGATGCAAA 480
**** **** ** * ** *********** * * *** ** * ** * *
consensus_7446#0 TAAAAGAAACAAAAAAAAACAAAACAAAGAAAGTGGATAAAGAACCGCAAGAC--AAGTG 713
consensus_7446#2 TAAAAGAAACAAAAAAAAACAAAACAAAGAAAGTGGAAAAAGAACCGCATTTCCTAGAGG 464
consensus_7446#1 CACAACAC-TGTAGCAAACCAAAATGTGCAAAGCGAAGGAAGAAGCG-ATTTGAAGGGTG 538
* ** * * *** ***** **** * * ***** ** * *
consensus_7446#0 AAAAGAAACAAATAACTATATTCAACTTATACAAGGG-ATTTATAACATATTAA--GGTA 770
consensus_7446#2 GGCAACGACGAGGAATAAGAT--AACAAAAACAAAAGTAAAAACATCATTGCAAACGATA 522
consensus_7446#1 TGTATCAACTTAGAGAATTATTTACAAACCGTTGTTGTAAGGA-ATCATGTGTAAGGCTC 597
* ** * ** * * * * * *** * * *
consensus_7446#0 GTCAAAAAGAAGAAGAAAAACGGAGAGGAAAGAGGAAGTGAAGAAGAAGCAAACACCTTT 830
consensus_7446#2 GTTTAGGATTTTGTAGCATACGTAAA--ACTGTGGAAGCATGAAAGCAGGAAGGGATGAC 580
consensus_7446#1 CAAAGAAAGGTGGACAAACAAAGTGAGGGAAGACGAAACAAAAACTAAACAAAAAAAAAA 657
* * * * * *** * * **
consensus_7446#0 GCAAAAATCGAACATTAAAGTATGA-AAACAATGACCCAT-TAACAGGCAAAATTGTATT 888
consensus_7446#2 AGGGAGAAAGCACGTCAACCCAATT-TGTAAGTGATGCAA-A------------------ 620
consensus_7446#1 GGATGATAGGATGATAAAAACAAAACAGAAAATGGAGCAGCAGACGTTTGTTTGTGTGTG 717
* * ** * * ** **
consensus_7446#0 TTAGATAACAAAAGCAACTAAAATAATGGAAAAAACAGAGAGACATGTGTTTAAGTGGCA 948
consensus_7446#2 ------------------------------------------------------------
consensus_7446#1 TGTGTGTGTGTGTGTGTGTGTTGCAAAAGCGACTCCTTGGGAATGGTTTTTCTGTCCTTT 777
consensus_7446#0 AGATTAAGCTAAACAAGAAGTAAAACAAAAAACAAAAACTAGCAAGTAAGACGAAACAAA 1008
consensus_7446#2 ------------------------------------------------------------
consensus_7446#1 GCGCAGCGCTGTCCTGTGCTCGCGATTTTTAGATTTTTTTTTCAATGTCTCCTC------ 831
consensus_7446#0 GCAAAGCATAAACTTTAAAGTGTAAAGGGAAAGAAGAAGGAAGGAACACAAAACATACAT 1068
consensus_7446#2 ------------------------------------------------------------
consensus_7446#1 ------------------------------------------------------------
consensus_7446#0 TAAACATGTGAGAAAGTAAGAGAAAACAAATTGTCAAAGCACACATTCAAAAAAAAAAAA 1128
consensus_7446#2 ------------------------------------------------------------
consensus_7446#1 ------------------------------------------------------------
consensus_7446#0 AAAAGAAAGAGACATCGTCACGTAGAG 1155
consensus_7446#2 ---------------------------
consensus_7446#1 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||