These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7474#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 820 fasta sequence [CCGCAGAGTCGCCCTCGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCTCCAGGCGTTAAGGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGC---AACATCGTATAATCCCGAGTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGGAAGAAGTAAAAACAACACGGTTCTAACATGCTGTTTTATTGTAGTGGCTTCTTAGGAAAAATTGATTTTTAACCAATTGTTTAGGAAAGCGGTTTATTGTTTTTTTTAGATGATTATAAGATTTGCAGACTATGGCTCGAGACCGTGAGTGATGCTGGACACTCCTGCGACAGGCCAAGACACCAAAGCGGTTGTAATATGGGATAGGTAAAGAAATTGTAGTTGAAACTAGCGAAGAAAACTCGAGCGGTGAGCAATTTTTTCAGCTTTTTTGTAACAAAAGATGAATCTCGTCTTAGAATAGTAAAATCACACAGTTTGATTAAAAGAAGACGGCAGGCCGTATAAGAAACCTCTGGTCTAATGGATAGCTGCATCCGTTGCTCCGTAGATGGATCAATAATGATTTTTGCTAAAAAGTTATCTACTTTACNATCGTCAAGCTAGCAGAGAGTACGTGAGGCATCATGCATTATTGATTGNAAGTATAGCTGAACTATGCCTTATGAATTATTTATCNCAACTTTACCTTTTG] [+] EMBL BM590319 [CCGCAGAGTCGCCCTCGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCTCCAGGCGTTAAGGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGCAAAAACATCGTATAATCCCGAGTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGGAAGAAGT ] [+] EMBL BX622165 [ AGAGTCG CTTGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCTCCAGGCGTTAAGGAAAGAATTGGAGTTGTGTTTGAGGTGGTGAAAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGC AACATCGTATAATCCCGAGTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGGAAGAAGTAAAAACAACACGGTTCTAACATGCTGTTTTATTGTAGTGGCTTCTTAGGAAAAATTGATTTTTAACCAATTGTTTAGGAAAGCGGTTTATTGTTTTTTTTAGATGATTATAAGATTTGCAGACTATGGCTCGAGACCGTGAGTGATGCTGGACACTCCTGCGACAGGCCAAGACACCAAAGCGGTTGTAATATGGGATAGGTAAAGAAATTGTAGTTGAAACTAGCGAAGAAAACTCGAGCGGTGAGCAATTTTTTCAGCTTTTTTGTAACAAAAGATGAATCTCGTCTTAGAATAGTAAAATCACACAGTTTGATTAAAAGAAGACGGCAGGCCGTATAAGAAACCTCTGGTCTAATGGATAGCTGCATCCGTTGCTCCGTAGATGGATCAATAATGATTTTTGCTAAAAAGTTATCTACTTTACNATCGTCAAGCTAGCAGAGAGTACGTGAGGCATCATGCATTATTGATTGNAAGTATAGCTGAACTATGCCTTATGAATTATTTATCNCAACTTTACCTTTTG] [+] EMBL BM654416 [ ccgGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCTCCAGGCGTTAAGGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGC AACATCGTATAATCCCGAGTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGG ] consensusID : consensus_7474#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 812 fasta sequence [CCGCCCACGCGTCCGGTCGCTTGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCTCCAGGCGTTAAAGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGCAACATCGTATAATCCCGAGTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGGAAGAAGTAAAAACAACACGGTTCTAACATGCTGTTTTATTGTAGTGGCTTCCTGGGAAAGATTGATTTTTAACCAATTGTTTAGGAAAGCGATTTATTGTTATTTTTTAGATGATTATAAGATTTGCAGGCTATGGCTCGACACCGTGAGTGATGCTGGACACTCCTGCGACAGGCCAAGACACCAAAGCAATTGTAATATGGGATAGGTAAAGAAATTGTAGTTGAAACTAGCGAAAAAAACTCCGAGCGGGGAGCAATTTTTTCCAGCTTTTTTTGGAACGAAAGATGAAACTCCTACCGGTTTGATTAAAAAAAAAAACGGCCAGGGCCGTATAAAAAAAACCCCTGGGCCTAATGGGATAACCTGGCATCCGGTGGCTCCCGGTAAAATGGGATCCAATAAATGGAATTTTTTGGCCTAAAAAAAGTGTATTCCTACCCTTTTTTAAATCCCGCCCAAGCCTTAACCCAAAAAAATACCCGTGGGGGGGCATCCCTGGGCCTTTATTTTGGATTTGG] [+] EMBL BM657698 [CCGCCCACGCGTCCGGTCGCTTGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCTCCAGGCGTTAAAGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGCAACATCGTATAATCCCGAGTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGGAAGAAGTAAAAACAACACGGTTCTAACATGCTGTTTTATTGTAGTGGCTTCCTGGGAAAGATTGATTTTTAACCAATTGTTTAGGAAAGCGATTTATTGTTATTTTTTAGATGATTATAAGATTTGCAGGCTATGGCTCGACACCGTGAGTGATGCTGGACACTCCTGCGACAGGCCAAGACACCAAAGCAATTGTAATATGGGATAGGTAAAGAAATTGTAGTTGAAACTAGCGAAAAAAACTCCGAGCGGGGAGCAATTTTTTCCAGCTTTTTTTGGAACGAAAGATGAAACTCCTACCGGTTTGATTAAAAAAAAAAACGGCCAGGGCCGTATAAAAAAAACCCCTGGGCCTAATGGGATAACCTGGCATCCGGTGGCTCCCGGTAAAATGGGATCCAATAAATGGAATTTTTTGGCCTAAAAAAAGTGTATTCCTACCCTTTTTTAAATCCCGCCCAAGCCTTAACCCAAAAAAATACCCGTGGGGGGGCATCCCTGGGCCTTTATTTTGGATTTGG] [+] EMBL BM588074 [ CCGGTCGCTTGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCTCCAGGCGTTAAAGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGCAACATCGTATAATCCCGAGTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGGAAG ] consensusID : consensus_7474#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 350 fasta sequence [TTCACAATTGCTTGTTGTTCCAGAGTCGCTTGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCTCCAGGCGTTAAAGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGCAACATCGTATAATCCCGATTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGGAAGAAGTAAAAACACAAAAAAAAAAAAAAAAAGGCCACATTGTGCCCCGC] [+] EMBL CNS08P4Z [TTCACAATTGCTTGTTGTTCCAGAGTCGCTTGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCTCCAGGCGTTAAAGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGCAACATCGTATAATCCCGATTGTATGATTTAACATGGGAATAAATCACTATTTGCTGTGGAAGAAGTAAAAACACAAAAAAAAAAAAAAAAAGGCCACATTGTGCCCCGC] [-] EMBL CNS08P50 [ AGTCGCTTGAAGAAGAAGCACGTTTCGTAACTTTCCCAGCAAAATGCTATCTCCAGGCGTTAAAGAAAGAATTGGAGTTGTCTTTGAGGTGGTGAAAACTTCCTTTTACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGATCAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGCAGCAACATCGTATAATCCCGATTGTATGATTTAACATGGGAATAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7474#0 -----------------CCGCAGAGTCGCCCTCGAAGAAGAAGCACGTTTCGTAACTTTC 43 consensus_7474#2 TTCACAATTGCTTGTTGTTCCAGAGTCGC--TTGAAGAAGAAGCACGTTTCGTAACTTTC 58 consensus_7474#1 ---------CCGCCCACGCGTCCGGTCGC--TTGAAGAAGAAGCACGTTTCGTAACTTTC 49 ***** * *************************** consensus_7474#0 CCAGCAAAATGCTATCTCCAGGCGTTAAGGAAAGAATTGGAGTTGTCTTTGAGGTGGTGA 103 consensus_7474#2 CCAGCAAAATGCTATCTCCAGGCGTTAAAGAAAGAATTGGAGTTGTCTTTGAGGTGGTGA 118 consensus_7474#1 CCAGCAAAATGCTATCTCCAGGCGTTAAAGAAAGAATTGGAGTTGTCTTTGAGGTGGTGA 109 **************************** ******************************* consensus_7474#0 AAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGAT 163 consensus_7474#2 AAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGAT 178 consensus_7474#1 AAACTTCCTTTCACTGGGGTTTCATTCCGACGCTGTTGTATTTAGGATTCCGCAAAGGAT 169 ************************************************************ consensus_7474#0 CAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGC 223 consensus_7474#2 CAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGC 238 consensus_7474#1 CAGAACCCGGCATGCCTCCGTTACAATTAGCTAATTTACTATGGTAGTCAGTGTTGAAGC 229 ************************************************************ consensus_7474#0 AGCAACATCGTATAATCCCGAGTGTATGATTTAACATGGGAATAAATCACTATTTGCTGT 283 consensus_7474#2 AGCAACATCGTATAATCCCGATTGTATGATTTAACATGGGAATAAATCACTATTTGCTGT 298 consensus_7474#1 AGCAACATCGTATAATCCCGAGTGTATGATTTAACATGGGAATAAATCACTATTTGCTGT 289 ********************* ************************************** consensus_7474#0 GGAAGAAGTAAAAACA-ACACGGTTCTAACATGCTGTTTTATTGTAGTGGCTTCTTAGGA 342 consensus_7474#2 GGAAGAAGTAAAAACACAAAAAAAAAAAAAAAAAGGCCACATTGT----GCCCCGC---- 350 consensus_7474#1 GGAAGAAGTAAAAACA-ACACGGTTCTAACATGCTGTTTTATTGTAGTGGCTTCCTGGGA 348 **************** * * ** * * ***** ** * consensus_7474#0 AAAATTGATTTTTAACCAATTGTTTAGGAAAGCGGTTTATTGTT-TTTTTTAGATGATTA 401 consensus_7474#2 ------------------------------------------------------------ consensus_7474#1 AAGATTGATTTTTAACCAATTGTTTAGGAAAGCGATTTATTGTTATTTTTTAGATGATTA 408 consensus_7474#0 TAAGATTTGCAGACTATGGCTCGAGACCGTGAGTGATGCTGGACACTCCTGCGACAGGCC 461 consensus_7474#2 ------------------------------------------------------------ consensus_7474#1 TAAGATTTGCAGGCTATGGCTCGACACCGTGAGTGATGCTGGACACTCCTGCGACAGGCC 468 consensus_7474#0 AAGACACCAAAGCGGTTGTAATATGGGATAGGTAAAGAAATTGTAGTTGAAACTAGCGAA 521 consensus_7474#2 ------------------------------------------------------------ consensus_7474#1 AAGACACCAAAGCAATTGTAATATGGGATAGGTAAAGAAATTGTAGTTGAAACTAGCGAA 528 consensus_7474#0 GAAAACTC-GAGCGGTGAGCAATTTTTTCAG--CTTTTTTGTAACAAAAGATGAATCTCG 578 consensus_7474#2 ------------------------------------------------------------ consensus_7474#1 AAAAACTCCGAGCGGGGAGCAATTTTTTCCAGCTTTTTTTGGAACGAAAGATGAAACTCC 588 consensus_7474#0 TCTTAGAATAGTAAAATCACACAGTTTGATTAAAAGAAGACGGCAGGCCGTATAAG--AA 636 consensus_7474#2 ------------------------------------------------------------ consensus_7474#1 TACCGGTTTGATTAAAAAAAAAAACGGCCAGGGCCGTATAAAAAAAACCCCTGGGCCTAA 648 consensus_7474#0 ACCTCTGGTCTAATGGATAGCTGCATCCGTTGCTCCGTAGATGGATCAATAATGATTTTT 696 consensus_7474#2 ------------------------------------------------------------ consensus_7474#1 TGGGATAACCTGGCATCCGGTGGCTCCCGGTAAAATGGGATCCAATAAATGGAATTTTTT 708 consensus_7474#0 G--CTAAAAAGTTATCTACTTTACNATCGTCAAGCTAGCAGAGAGTACGTGAGGCATCAT 754 consensus_7474#2 ------------------------------------------------------------ consensus_7474#1 GGCCTAAAAAAAGTGTATTCCTACCCTTTTTTAAATCCCGCCCAAGCCTTAACCCAA-AA 767 consensus_7474#0 GCATTATTGATTGNAAGTATAGCTGAACTATGCCTTATGAATTATTTATCNCAACTTTAC 814 consensus_7474#2 ------------------------------------------------------------ consensus_7474#1 AAATACCCGTGGGGGGGCATCCCTGGGCCTTTATTTTGGATTTGG--------------- 812 consensus_7474#0 CTTTTG 820 consensus_7474#2 ------ consensus_7474#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||