These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7475#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1239 fasta sequence [GTTTTGGTTTTTTGGGGATTTTAAATGGAATACGCGTCACGCGAAACGATAGCCGCAACAACCCTGCACACTCAATGAGCAATGAGGGTTATTTTTTGTTTCTTGTTTTCTTTTGATTGGCTTGCCTTCCCCCCCCCCCCCAACGGCGCTCTCCCCTGTTGCGCTGTCGGGGACGTTCCTCTCTCTCTCTCTTTCTTGGTGTTATGAATTGGTCAAATTGTGTGATTTTTTTTTGTTGCTATTTTTCCGTATCAACATTTACAAGAACATATA--TTTTTTGCGTCGAATCAAATGATAAACAAATGTAGAATTATTCGTAAGATGTAAATCGCGCACGTTTCATTGTGCTTGGCGAAGAACGCAAGGGTTCCGATCAACGCCATCCACACAAACAAACAGAACAAAAGG-GAAAAGATGTAAAATAAACAAAGCACAAATCGCTCACAAGGTGCGTGTACTGTACATGGTCAAATGATGAAAGTATATCACAAATGGTTTGAGTAAACAAAATCAAAATAACTGCATCAAAATATCTGAAACATAAACGTATAGCTTCCGCTCGTCAAAAGTACGCAGTGTCAAGCTGGTGAAA-AAACAAACCCCCCCCGAAAATCATGTGGGAAAACGACAAAAATCAAATCAGCAGAAGCAACAACCTAAAAGAAAGCCTCAGCCAACCCGACACTCCTAACGGGCCCCCCGGGG-CCAGCGCCTAATAAAGCGCACAGCACTCGGCGGAAAGGAGTTTCTGCTATAGCTGGGCGGCATTCTCATCCAAACCCGCCACTGCTGCTCGTCACTCCACCGAACGCTATTACACTCCCACCTCGTGGATGTAGCAATCCCGGCACACGCGAACCGCCTTGGTCAAACCATATTTTGGCAACGGTTTGGACAGGTTCGAGCACACGCCGCAAAACACGCCGCCACAGTTGCGGCAATGGTGCCTTCTGCGGAACGGTGTAAAGGCCGACGCGCAGGCCATGCACCGCGGCGCATCGCAGTCCGGAATCCATCTCGGCGGCTCCTCCGGCATCCGTCGCTGCTGCTCGTGCGCCGTGTGATGGGCGGAGCTGTGATGATT---ACCACCACCACCACCAGTATTGCTGTTGACGGGACTGCTCGGGCTGCTGCGGCTGCGGCCGTAGTCATTTTTGGACCCGCTGGCACTGTG-CTTC-GGTACCACCACCGCCGCCGGCCGACGCCGGCCCGCCCTCGACCACATGCACGCCTCGCTCA] [+] EMBL CNS08I7E [GTTTTGGTTTTTTGGGGATTTTAAATGGAATACGCGTCACGCGAAACGATAGCCGCAACAACCCTGCACACTCAATGAGCAATGAGGGTTATTTTTTGTTTCTTGTTTTCTTTTGATTGGCTTGCCTTCCCCCCCCCCCCCAACGGCGCTCTCCCCTGTTGCGCTGTCGGGGACGTTCCTCTCTCTCTCTCTTTCTTGGTGTTATGAATTGGTCAAATTGTGTGATTTTTTTTTGTTGCTATTTTTCCGTATCAACATTTACAAGAACATATATTTTTTTTGCGTCGAATCAAATGATAAACAAATGTAGAATTATTCGTAAGATGTAAATCGCGCACGTTTCATTGTGCTTGGCGAAGAACGCAAGAGTTCCGATCAACGCCATCCACACAAACAAACAGAACAAAGGGAAAAAAAATGTAAAATAAACAAAGCACAAATCGCTCACAAGGTGCGTGTACTGTACATGGTCAAATGATGAAAGTATATCACAAATGGTTTGAGTAAACAAAATCAAAATAACTGCATCAAAATATCTGAAACATAAACGTATAGCTTCCGCTCGTCAAAAGTACGCAt ] [+] EMBL CNS09PWV [ TATCAACATTTACAAGAACATATA TTTTTTGCGTCGAATCAAATGATAAACAAATGTAGAATTATTCGTAAGATGTAAATCGCGCACGTTTCATTGTGCTTGGCGAAGAACGCAAGGGTTCCGATCAACGCCATCCACACAAACAAACAGAACAAAAGG GAAAAGATGTAAAATAAACAAAGCACAAATCGCTCACAAGGTGCGTGTACTGTACATGGTCAAATGATGAAAGTATATCACAAATGGTTTGAGTAAACAAAATCAAAATAACTGCATCAAAATATCTGAAACATAAACGTATAGCTTCCGCTCGTCAAAAGTACGCAGTGTCAAGCTGGTGAAA AAACAAACCCCCCCCGAAAATCATGTGGGAAAACGACAAAAATCAAATCAGCAGAAGCAACAACCTAAAAGAAAGCCTCAGCCAACCCGACACTCCTAACGGGCCCCCCGGGG CCAGCGCCTAATAAAGCGCACAGCACTCGGCGGAAAGGAGTTTCTGCTATAGCTGGGCGGCATTCTCATCCAAACCCACCACTGCTGTTCGTCACTCCACCGAGCGCTATTACACTCCCACCTCGTGGATGTAGCAATCCCGACACACGCGAACCGCCTTGGTCAAACCATATTTTGGCAACGGTTTGGACAGGTTCGAGCACACGCCGCAAAACACGCCGCCACAGTTGCGGCAATGGTGCCTTCTGCGGAACGGTGTAAAGGCCGACGCGCAGGCCATGCACCGCGGCGCATCGCAGTTCGGAATCCATCTCGGCGGCTCCTCCGGC ] [-] EMBL BM628055 [ TATCAACATTTACAAGAACATACA TTTTTAGCGTCGAATCAAATGATAAACAAATGTAGAATTATTCGTAAGATGTAAATCGCGCACGTTTCATTGTGCTTGGCGAAGAACGCAAGGGTTCCGATCAACGCCATCCGCACAAACAAACAGAACAAAAGG GAAAAGATGTAAAATAAACAAAGCACAAATCGCTCACAAGGTGCGTGTACTGTACATGGTCAAATGATGAAAGTATATCACAAATGGTTTGAGTAAACAAAATCAAAATAACTGCATCAAAATATCTGAAACATAAACGTATAGCTTCCGCTCGTCAAAAGTACGCAGTGTCAAGCTGGTGAAACAAACAAAACCCCCCCGAAAATCATGTGGGAAAACAACAAAAATCAAATCAGCAGAAGCAACAACCTAAAAGAAAGCCTCAGCCAACCCGACACTCCTAACGGGCCCCCCGGGG CCAGCGCCTAATAAAGCGCACAGCACTCGGCGGAAAGGAGTTTCTGCTATAGCTGGGCGGCATTCTCATCCAAACCCGCCACTGCTGCTCGTCACTCCACCGAACGCTATTACACTCCCACCTCGTGGATGTAGCAATCCCGGCACACGCGAACCGCCcgg ] [-] EMBL BM654766 [ ACAACCTAAAAGAAAGCCTCAGCCAACCCGACACTCCTAACGGGCCCCCCGGGGCCCAGCGCCTAATAAAGCGCACAGCACTCGGCGGAAAGGAGTTTCTGCTATAGCTGGGCGGCATTCTCATCCAAACCCGCCACTGCTGCTCGTCACTCCACCGAACGCTATTACACTCCCACCTCGTGGATGTAGCAATCCCGGCACACGCGAACCGCCTTGGTCAAACCATATTTTGGCAGCGGTTTGGACAGGTTCGAGCACACGCCGCAAAACACGCCGCCACAGTTGCGGCAATGGTGCCTTCTGCGGAACGGTGTAAAGGCCGACGCGCAGGCCATGCACCGCGGCGCATCGCAGTCCGGAATCCATCTCGGTGGCTCCTCCGGCATCCGTCGCTGCTGCTCGTGCGCCGTGTGATGGGCGGAGCTGTGATGATT ACCACCACCACCACCAGTATTGCTGTTGACGGGACTGCTCGGGCTGCTGCGGCTGCGGCCGTAGTCATTTTTGGACCCGCTGGCACTGTGCCTTCGGGTACCACCACCGCCGCCGGCCGACGCCGG ] [-] EMBL CNS09PWU [ GCCTTGGTCAAACCATATTTTGGCAACGGTTTGGACAGGTTCGAGCACACGCCGCAAAACACGCCGCCACAGTTGCGGCAATGGTGCCTTCTGCGGAACGGTGTAAAGGCCGACGCGCAGGCCATGCACCGCGGCGCATCGCAGTCCGGAATCCATCTCGGCGGCTCCTCCGGCATCCGTCGCTGCTGCTCGTGCGCCGTGTGATGGGCGGAGCTGTGATGATTACCACCACCACCACCACCAGTATTGCTGTTGACGGGACTGCTCGGGCTGCTGCGGCTGCGGCCGTAGTCATTTTTGGACCCGCTGGCACTGTG CTTC GGTACCACCACCGCCGCCGGCCGACGCTTTCCCGCCCTCGACCACATGCACGCCTCGCTCA] consensusID : consensus_7475#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 808 fasta sequence [CCGCACCACCATCATCATCATTCCTATGCCGAATCGGCCGAGGGTACCAGCTCGGTTGTCAGCACTATTACCACCAGCAACAACAGCACATCGAACGGAAGCACCCGCCACCACAGTCGAATGCAGCAGCAGCAGCACCAGCAGCAGCGCAATTCATCCTCCAGCTGTGATACATCACCGACGCAGAGCGAATGCAGTGATGCGCAGGAGGTGGCGCTCGCCATCCGAGCGGCTGGACGAAATAAATTCAAATCAACGGAAAACCTGCTGCACCGTCTGTTCGTGTGCATTGCCGGCGTGGCCGATCAGCTGCAGACGAACTTTGCCGCCGATCTGAGGAAGATGCTGCGAAGCGTGTTCATCATGAACTCGTCCCCGCCCGAGCCGGACGAGCCACCGGAGCCGAGCGGCAGCGAGGAGGAGTCGAAGGACAGCCAGCACAACCACCCGTCCGATCTGTTC-GAGTTCCGGGCCAGCGAGCAGGACGTCATCACGGCCGACCAGCAGAACCACAGCGGCGGCTCCAGCCAAAGCATCTACTCGGCCGAGGAGAGCGAACCCCGAGCAGGATTCGGTGTTCGGATTCGTCGGGCGATTCGTCCCCGGTGCGCCGCAGGCCAGCGTCGAGAGCCGGAACGTGACGGTGAACGTGTCCGTGTCGGTGGTGGCTTCCTCGCCCGTCGGTGCGGGCGGACAGGTGGAGGGGGTATGGTCGGGGGCAGCCGGACGGGGCAGGAGCGGAGTGGGAGTCTGAGCGAGGCGTGCATCGTGGTCGAGGGCGGGAAAGCGTCGGCCGGACAGCGGCGTC] [+] EMBL BM615061 [CCGCACCACCATCATCATCATTCCTATGCCGAATCGGCCGAGGGTACCAGCTCGGTTGTCAGCACTATTACCACCAGCAACAACAGCACATCGAACGGAAGCACCCGCCACCACAGTCGAATGCAGCAGCAGCAGCACCAGCAGCAGCGCAATTCATCCTCCAGCTGTGATACATCACCGACGCAGAGCGAATGCAGTGATGCGCAGGAGGTGGCGCTCGCCATCCGAGCGGCTGGACGAAATAAATTCAAATCAACGGAAAACCTGCTGCACCGTCTGTTCGTGTGCATTGCCGGCGTGGCCGATCAGCTGCAGACGAACTTTGCCGCCGATCTGAGGAAGATGCTGCGAAGCGTGTTCATCATGAACTCGTCCCCGCCCGAGCCGGACGAGCCACCGGAGCCGAGCGGCAGCGAGGAGGAGTCGAAGGACAGCCAGCACAACCACCCGTCCGATCTGTTC GAGTTCCGGGCCAGCGAGCAGGACGTCATCACGGCCGACCAGCAGAACCACAGCGGCGGCTCCAGCC ] [+] EMBL CNS08I7D [ GTCGAAGGACAGCTAGCACAACAACCAGTCCGATCTGTTCAGAGTTCCGGGCCAGCGAGCAGGACGTCATCACGGCCGACCAGCAGAACCACAGCGGCGGCTCCAGCCAAAGCATCTACTCGGCCGAGGAGAGCGAACCCCGAGCAGGATTCGGTGTTCGGATTCGTCGGGCGATTCGTCCCCGGTGCGCCGCAGGCCAGCGTCGAGAGCCGGAACGTGACGGTGAACGTGTCCGTGTCGGTGGTGGCTTCCTCGCCCGTCGGTGCGGGCGGACAGGTGGAGGGGGTATGGTCGGGGGCAGCCGGACGGGGCAGGAGCGGAGTGGGAGTCTGAGCGAGGCGTGCATCGTGGTCGAGGGCGGGAAAGCGTCGGCCGGACAGCGGCGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7475#0 GTTTTGGTTTTTTGGGGATTTTAAATGGAATACGCGTCACGCGAAACGATAGCCGCAACA 60 consensus_7475#1 ------------------------------------------------------------ consensus_7475#0 ACCCTGCACACTCAATGAGCAATGAGGGTTATTTTTTGTTTCTTGTTTTCTTTTGATTGG 120 consensus_7475#1 ------------------------------------------------------------ consensus_7475#0 CTTGCCTTCCCCCCCCCCCCCAACGGCGCTCTCCCCTGTTGCGCTGTCGGGGACGTTCCT 180 consensus_7475#1 ----------------------------------------------------CCGCACCA 8 ** ** consensus_7475#0 CTCTCTCTCTCTTTCTTGGTGTTATGAATTGGTCAAAT-TGTGTGATTTTTTTTTGTTGC 239 consensus_7475#1 CCATCATCATCATTCCTA---TGCCGAATCGGCCGAGGGTACCAGCTCGGTTGTCAGCAC 65 * ** ** *** * * **** ** * * * * * ** * * consensus_7475#0 TATTTTTCC--GTATCAACATTTACAAGAACATATATTTTTTGCGTCG-AATCAAATGAT 296 consensus_7475#1 TATTACCACCAGCAACAACAGCACATCGAACGGAAGCACCCGCCACCACAGTCGAATG-- 123 **** * * * ***** **** * * * * ** **** consensus_7475#0 AAACAAATGTAGAATTATTCGTAAGATG-TAAATCGCGCACGTTTCAT-TGTGCTTGGCG 354 consensus_7475#1 CAGCAGCAGCAGCACCAGCAGCAGCGCAATTCATCCTCCAGCTGTGATACATCACCGACG 183 * ** * ** * * * * * *** ** * * ** * * ** consensus_7475#0 AAGAACGCA---AGGGTTCCGATCAACGCCATCCACACAAACAAACAGAACAAAAGGGAA 411 consensus_7475#1 CAGAGCGAATGCAGTGATGCGCAGGAGGTGGCGCTCGCCATCCGAGCGG-CTGGACGAAA 242 *** ** * ** * * ** * * * * * * * * * * * * ** consensus_7475#0 AAGATGTAAAATAAACAAAGCACAAATCGCTCACAAGGTGCGTGTACTGTACATGGTCAA 471 consensus_7475#1 TAAAT-TCAAATCAACGGAAAACCTGCTGCACCGTCTGTTCGTGTGCATTGCCGGCGTGG 301 * ** * **** *** * ** ** * ** ***** * * * * consensus_7475#0 ATGATGAAAGTATATCACAAATGGTTTGAGTAAACAAAATCAAAATAACTGCATCAAAAT 531 consensus_7475#1 CCGATCAG------CTGCAGACGAACTTTGCCGCCGATCTGAGGA-AGATGCTGCGAAGC 354 *** * ** * * * * * * * * * * *** * ** consensus_7475#0 ATCTGAAACATAAACGTATAGCTTCCGCTCGTCAAAAGTACGCAGTGTCAAGCTGGTGAA 591 consensus_7475#1 GTGTTCATCATGAAC---TCGTCCCCGCCCG--AGCCGGACGAGCCACCGGAGCCGAGCG 409 * * * *** *** * * **** ** * * *** * * * consensus_7475#0 AAAACAAACCCCCCCCGAAAATCATGTGGGAAAACGACAAAAATCAAATCAGCAGAAGCA 651 consensus_7475#1 GCAGCGAGGAGGAGTCGAAGGACAGCCAGCACAAC--CACCCGTCCGATCTGTTCGAGTT 467 * * * **** ** * * *** ** ** *** * ** consensus_7475#0 ACAACCTAAAAGAAAGCCTCAGCCAACCCGACACTCCTAACGGGCCCCCCGGGGCCAGCG 711 consensus_7475#1 CCGGGCCAGCGAGCAGGAC--GTCATCACGGC-CGACCAGCAGAACCACAGCGGC-GGCT 523 * * * ** * ** * ** * * * * * * ** * * *** ** consensus_7475#0 CCTAATAAAGCGCACAGCACTCGGCGGAAAGGAGTTTCTGCTATAGCTGGGCGGCATTCT 771 consensus_7475#1 CCAGCCAAAGCATCTA---CTCGGCCGAGGAGAG------CGAACCCCGAGCAGGATTCG 574 ** ***** * ****** ** *** * * * * ** * **** consensus_7475#0 -CATCCAAACCCGCCACTGCTGCTCGTCACTCCACCGAACGCTATTACACTCCCACCTCG 830 consensus_7475#1 GTGTTCGGATTCGTCGG-GCGATTCGTC----CCCGGTGCGCC---GCAGGCCAGCGTCG 626 * * * ** * ** ***** * * * *** ** ** * *** consensus_7475#0 TGGATGTAGCAATCCCGGCACACGCGAACCGCCTTGGTCAAACCATATTTTGGCAACGGT 890 consensus_7475#1 AGAGCCGGAACGTGACGGTGAACGTGT-CCGTGTCGGTGGTGGCTTCCTCGCCCGTCGGT 685 * * *** *** * *** * *** * * * * **** consensus_7475#0 TTGGACAGGTTCGAGCACACGCCGCAAAACACGCCGCCACAGTTGCGGCAATGGTGCCTT 950 consensus_7475#1 GCGGGCGGA--CAGGTGGAGGGGGTATGGT---CGGGGGCAGCCG----GACGGGGCA-- 734 ** * * * * * * * * * * *** * * ** ** consensus_7475#0 CTGCGGAACGGTGTAAAGGCCGACGCGCAGGCCATGCACCGCGGCGCATCGCAGTCCGGA 1010 consensus_7475#1 ----GGAGCGGAGTGGGAGTC--TGAGCGAGGCGTGCATCGTGG----TCGAGGGCGGGA 784 *** *** ** * * * ** * * **** ** ** *** * * *** consensus_7475#0 ATCCATCTCGGCGGCTCCTCCGGCATCCGTCGCTGCTGCTCGTGCGCCGTGTGATGGGCG 1070 consensus_7475#1 AAGCGTCG-GCCGGA--CAGCGGCGTC--------------------------------- 808 * * ** * *** * **** ** consensus_7475#0 GAGCTGTGATGATTACCACCACCACCACCAGTATTGCTGTTGACGGGACTGCTCGGGCTG 1130 consensus_7475#1 ------------------------------------------------------------ consensus_7475#0 CTGCGGCTGCGGCCGTAGTCATTTTTGGACCCGCTGGCACTGTGCTTCGGTACCACCACC 1190 consensus_7475#1 ------------------------------------------------------------ consensus_7475#0 GCCGCCGGCCGACGCCGGCCCGCCCTCGACCACATGCACGCCTCGCTCA 1239 consensus_7475#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||