These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1541 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGTTTCAATACTTTTTGTGTACTTTTTTTCTAACTGTTGTCTTTCTCTCTCTCTCTCAAACCCATCCCGCACACACATACACACCATCCCTAGTGTTCTGAATTGTTTGTATGTTTTTTTTTCTCTCTCACTGTCTCGGGTCTTCTCTATGCTAATGTCCATATGCTCTCATTCCTTACCAGGATGAAAACTACATTTCTATCCACAGCAAAGATAAAAGGAAATGCAAACACATTTTTATGTTTTTTTTAAAGATATATATCATATTTAATCATAAAGTGTGGCATATTTCCATCTTTTTATCATGGTTTTGTTTCATGATAGAATTTTCCACGTTTTCATTTACGCATGAAGCAAAGCATATATATTTAAAAAATAAACGAAAACACAACACTACTATCTTACACTTACACGCCCTATCTACTCATAATTACATGCACCCAACCCAACCTCTGCAACAAGTACACTCCTTCACACGTACATATACGTATACGCATACAATTACATATATATACACACACATGCATACACACGAACACACGAACGATTGCGTTAATAGTAGGTAAATAACATATTACAAAGCTAATATGTTGTCGATTTTATGTGTTATTACTAGTGAACTGAGGCTTCACCCACACAGCTGATGGGTGGGTACGGCCAGTGGGTCGCCGTACCGTCGATTGTCGTTTTAGTTCACTTTCACTGATGAAAGAAAACAGTAAACGTTCTCCCCCAGACACACACACACACACAAACACACACGTAGACAGCAAACACTTGACCCGAAATACGATCGACCGAACCAACGTTTACGTCTTGGACACGCCGAAAGAACACTCGATTGTCTCTTTGTGTGTTGTGTCCGTTTTCCGCCACAGCATCGCAAAGGTTCACGGGCATTCGTTTCTATCACACTCCCCTTTAGCCGCGCTAAGTATGCCTCATAAAAGCAGATAATCGATGGCATAGCAAAGAGAGTACGTAGCAAGAGATTTTGAAACAAATAAACAGCTATATGGTAAAGTTAATCAAAAGTATGACTGACATATAGGCCCGCCCCTCCCTGTGTGGCACTCATATCTCGTTACTCTGTGTTACGCCTAATGTATTAACTAAACAAAACAAAATCATAAAGCATAAGGGCATATGTAAGCTAACGTGCGCTGCTGACGATTGCGTACCGGTTGCGCAAACCACACATACACATTGGAAATGCGCACAGTGCGAACGCAAACATTCGAAACAATAGCTAATAATGTATGCACAGAGCATCACCCCGCGTGTCCGCCCAGGCAAAAGGCAGGCAGAGGGCGGCAATATCTGTAAACAGCAGTTTTGATCGATTGTGTGCGAAGTGAGAGGAGGGCGGCGGTGGCGAAATGAGTGTAAATGTAAGCGAATCGATTCTCGATGTAACGCGCAGACTTATTACTAAAGTAGAGTAAAGAGGGAGATTATGCAAGCATAAATCAAATCCGTAAATAAGTGTGNTAAACATTATAATTCGAAAATAAAA] [+] EMBL BM610129 [CCGCCCACGCGTCCGCCCACGCGTCCGTTTCAATACTTTTTGTGTACTTTTTTTCTAACTGTTGTCTTTCTCTCTCTCTCTCAAACCCATCCCGCACACACATACACACCATCCCTAGTGTTCTGAATTGTTTGTATGTTTTTTTTTCTCTCTCACTGTCTCGGGTCTTCTCTATGCTAATGTCCATATGCTCTCATTCCTTACCAGGATGAAAACTACATTTCTATCCACAGCAAAGATAAAAGGAAATGCAAACACATTTTTATGTTTTTTTTAAAGATATATATCATATTTAATCATAAAGTGTGGCATATTTCCATCTTTTTATCATGGTTTTGTTTCATGATAGAATTTTCCACGTTTTCATTTACGCATGAAGCAAAGCATATATATTT ] [+] EMBL BX622172 [ ATGATAGAATTTTCCACGTTTTCATTTACGCATGAAGCAAAGCATATATATTTAAAAAATAAACGAAAACACAACACTACTATCTTACACTTACACGCCCTATCTACTCATAATTACATGCACCCAACCCAACCTCTGCAACAAGTACACTCCTTCACACGTACATATACGTATACGCATACAATTACATATATATACACACACATGCATACACACGAACACACGAACGATTGCGTTAATAGTAGGTAAATAACATATTACAAAGCTAATATGTTGTCGATTTTATGTGTTATTACTAGTGAACTGAGGCTTCACCCACACAGCTGATGGGTGGGTACGGCCAGTGGGTCGCCGTACCGTCGATTGTCGTTTTAGTTCACTTTCACTGATGAAAGAAAACAGTAAACGTTCTCCCCCAGACACACACACACACACAAACACACACGTAGACAGCAAACACTTGACCCGAAATACGATCGACCGAACCAACGTTTACGTCTTGGACACGCCGAAAGAACACTCGATTGTCTCTTTGTGTGTTGTGTCCGTTTTCCGCCACAGCATCGCAAAGGTTCACGGGCATTCGTTTCTATCACACTCCCCTTTAGCCGCGCTAAGTATGCCTCATAAAAGCAGATAATCGATGGCATAGCAAAGAGAGTACGTAGCAAGAGATTTTGAAACAAATAAACAGCTATATGGTAAAGTTAATCAAAAGTATGACTGACATATAG ] [+] EMBL BM650078 [ ccgCACAACACTACTATCTTACACTTACACGCCCTATCTACTCATAATTACATGCACCCAACCCAACCTCTGCAACAAGTACACTCCTTCACACGTACATATACGTATACGCATACAATTACATATATATACACACACATGCATACACACGAACACACGAACGATTGAGTTAATAGTAGGTAAATAACATATTACAAAGCTAATATGTTGTCGATTTTATGTGTTATTACTAGTGAACTGAGGCTTCACCCACACAGCTGATGGGTGGGTACGGCCAGTGGGTCGCCGTACCGTCGATTGTCGTTTTAGTTCACTTTCACTGATGAAAGAAAACAGTAAACGTTCTCCCCCAGACACACACACACACACAAACACACACGTAGACAGCAAACACTTGACCCGAAATACGATCGACCGAACCAACGTTTACGTCTTGGACACGCCGAAAGAACACTCGATTGTCTCTTTGTGTGTTGTGTCCGTTTTCCGCCACAGCATCGCAAAGGTTCACGGGCATTCGTTTCTATCACACTCCCCTTTAGCCGCGCTAAGTATGCCTCATAAAAGCAGATAATCGATGGCATAGCAAAGAGAGTACGTAGCAAGAGATTTTGAAACAAATAAACAGCTATATGGTAAAGTTAATCAAAAGTA ] [+] EMBL BM623391 [ ccgGGTAAATAACATATTACAAAGCTAATATGTTGTCGATTTTATGTGTTATTACTAGTGAACTGAGGCTTCACCCACACAGCTGATGGGTGGGTACGGCCAGTGGGTCGCCGTACCGTCGATTGTCGTTTTAGTTCACTTTCACTGATGAAAGAAAACAGTAAACGTTCTCCCCCAG ACACACACACACAAACACACACATAGACAGCAAACACTTGACCCGAAATACGATCGACCGAACCAACGTTTACGTCTTGGACACGCCGAAAGAACACTCGATTGTCTCTTTGTGTGTTGTGTCCGTTTTCCGCCACAGCATCGCAAAGGTTCACGGGCATTCGTTTCTATCACACTCCCCTTTAGCCGCGCTAAGTATGCCTCATAAAAGCAGATAATCGATGGCATAGCAAAGAGAGTACGTAGCAAGAGATTTTGAAACAAATAAACAGCTATATGGTAAAGTTAATCAAAAGTATGACTGACATATAGGCCCGCCCCTCCCTGTGTGGCACTCATATCTCGTTACTCTGTGTTACGCCTAATGTATTAACTAAACAAAACAAAATCATAAAGCATAAGGGCATATGTAAGCTAACGTGCGCTGCTGACGATTGCGTACCGGTTGCGCAAACCACACATACACATTGGAAATGCGCACAGTGCGAACGC ] [+] EMBL BX622921 [ CGAACCAACGTTTACGTCTTGGACACGCCGAAAGAACACTCGATTGTCTCTTTGTGTGTTGTGTCCGTTTTCCGCCACAGCATCGCAAAGGTTCACGGGCATTCGTTTCTATCACACTCCCCTTTAGCCGCGCTAAGTATGCCTCATAAAAGCAGATAATCGATGGCATAGCAAAGAGAGTACGTAGCAAGAGATTTTGAAACAAATAAACAGCTATATGGTAAAGTTAATCAAAAGTATGACTGACATATAGGCCCGCCCCTCCCTGTGTGGCACTCATATCTCGTTACTCTGTGTTACGCCTAATGTATTAACTAAACAAAACAAAATCATAAAGCATAAGGGCATATGTAAGCTAACGCGCGCTGCTGACGATTGCGAACCGGTTGCGCAAACCACACATACACATTGGAAATGCGCACAGTGCGAACGCAAACATTCGAAACAATAGCTAATAATGTATGCACAGAGCATCACCCCGCGTGTCCGCCCAGGCAAAAGGCAGGCAGAGGGCGGCAATATCTGTAAACAGCAGTTTTGATCGATTGTGTGCGAAGTGAGAGGAGGGCGGCGGTGGCGAAATGAGTGTAAATGTAAGCGAATCGATTCTCGATGTAACGCGCAGACTTATTACTAAAGTAGAGTAAAGAGGGAGATTATGCAAGCATAAATCAAATCCGTAAATAAGTGTGNTAAACATTATAATTCGAAAATAAAA] [-] EMBL BX614547 [ ACATTGGAAATGCGCACAGTGCGAACGCAAACATTCGAAACAATAGCTAATAATGTATGCACAGAGCATCTCCCCGCGTGTCCGCCCTGGC ] consensusID : consensus_7478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [CCGTGCTCTCATTCCTTACCAGGATGAAAACTACTTTTCTATCCACAAAAAAGATAAAAGGAAATGCAAACACATTTTTATGTTTTTTTTTAAAGATATATATCATATTTAATCATAAAGTGTGGCATATTTCCATCTTTTTATCATGGTTTTGTTTCATGATAGAATTTTCCACGTTTTCATTTACGCATGAAGCAAATTATATATTTAAAAAATAAACGAAAACACAACACTACTATCTTTTTTTACACGCCCTATCTACTCATAATTACATGCACCCATTTTTTTCTCCGCCCCCAGCACAGTGGGGGGGACGTACATATACGTATACGCATACAATTACATATATATACACACACACATATACACACGAACACACGAACGATTGCGTTAATAGTAGGTAAATAACATATATACAAAGCTAATATGTTGTCGATTTTATGTGTTATTACTAGTGAACTGAGGCTTCACCCACAC] [+] EMBL BM638799 [CCGTGCTCTCATTCCTTACCAGGATGAAAACTACTTTTCTATCCACAAAAAAGATAAAAGGAAATGCAAACACATTTTTATGTTTTTTTTTAAAGATATATATCATATTTAATCATAAAGTGTGGCATATTTCCATCTTTTTATCATGGTTTTGTTTCATGATAGAATTTTCCACGTTTTCATTTACGCATGAAGCAAATTATATATTTAAAAAATAAACGAAAACACAACACTACTATCTTTTTTTACACGCCCTATCTACTCATAATTACATGCACCCATTTTTTTCTCCGCCCCCAGCACAGTGGGGGGGACGTACATATACGTATACGCATACAATTACATATATATACACACACACATATACACACGAACACACGAACGATTGCGTTAATAGTAGGTAAATAACATATATACAAAGCTAATATGTTGTCGATTTTATGTGTTATTACTAGTGAACTGAGGCTTCACCCACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7478#0 CCGCCCACGCGTCCGCCCACGCGTCCGTTTCAATACTTTTTGTGTACTTTTTTTCTAACT 60 consensus_7478#1 ------------------------------------------------------------ consensus_7478#0 GTTGTCTTTCTCTCTCTCTCTCAAACCCATCCCGCACACACATACACACCATCCCTAGTG 120 consensus_7478#1 ------------------------------------------------------------ consensus_7478#0 TTCTGAATTGTTTGTATGTTTTTTTTTCTCTCTCACTGTCTCGGGTCTTCTCTATGCTAA 180 consensus_7478#1 ------------------------------------------------------------ consensus_7478#0 TGTCCATATGCTCTCATTCCTTACCAGGATGAAAACTACATTTCTATCCACAGCAAAGAT 240 consensus_7478#1 -----CCGTGCTCTCATTCCTTACCAGGATGAAAACTACTTTTCTATCCACAAAAAAGAT 55 ******************************* ************ ****** consensus_7478#0 AAAAGGAAATGCAAACACATTTTTATGTTTTTTTT-AAAGATATATATCATATTTAATCA 299 consensus_7478#1 AAAAGGAAATGCAAACACATTTTTATGTTTTTTTTTAAAGATATATATCATATTTAATCA 115 *********************************** ************************ consensus_7478#0 TAAAGTGTGGCATATTTCCATCTTTTTATCATGGTTTTGTTTCATGATAGAATTTTCCAC 359 consensus_7478#1 TAAAGTGTGGCATATTTCCATCTTTTTATCATGGTTTTGTTTCATGATAGAATTTTCCAC 175 ************************************************************ consensus_7478#0 GTTTTCATTTACGCATGAAGCAAAGCATATATATTTAAAAAATAAACGAAAACACAACAC 419 consensus_7478#1 GTTTTCATTTACGCATGAAGCAAA--TTATATATTTAAAAAATAAACGAAAACACAACAC 233 ************************ ********************************* consensus_7478#0 TACTATCTTACACTTACACGCCCTATCTACTCATAATTACATGCACCCAACCCAACCTCT 479 consensus_7478#1 TACTATCTTTT-TTTACACGCCCTATCTACTCATAATTACATGCACCCATTTTTTTCTCC 292 ********* ************************************ *** consensus_7478#0 GCAACAAGTACACTCCTTCACACGTACATATACGTATACGCATACAATTACATATATATA 539 consensus_7478#1 GCCCCCAGCACAGTGGGGGGGACGTACATATACGTATACGCATACAATTACATATATATA 352 ** * ** *** * *************************************** consensus_7478#0 CACACACATGCATACACACGAACACACGAACGATTGCGTTAATAGTAGGTAAATAACATA 599 consensus_7478#1 CACACACACATATACACACGAACACACGAACGATTGCGTTAATAGTAGGTAAATAACATA 412 ******** ************************************************* consensus_7478#0 T-TACAAAGCTAATATGTTGTCGATTTTATGTGTTATTACTAGTGAACTGAGGCTTCACC 658 consensus_7478#1 TATACAAAGCTAATATGTTGTCGATTTTATGTGTTATTACTAGTGAACTGAGGCTTCACC 472 * ********************************************************** consensus_7478#0 CACACAGCTGATGGGTGGGTACGGCCAGTGGGTCGCCGTACCGTCGATTGTCGTTTTAGT 718 consensus_7478#1 CACAC------------------------------------------------------- 477 ***** consensus_7478#0 TCACTTTCACTGATGAAAGAAAACAGTAAACGTTCTCCCCCAGACACACACACACACACA 778 consensus_7478#1 ------------------------------------------------------------ consensus_7478#0 AACACACACGTAGACAGCAAACACTTGACCCGAAATACGATCGACCGAACCAACGTTTAC 838 consensus_7478#1 ------------------------------------------------------------ consensus_7478#0 GTCTTGGACACGCCGAAAGAACACTCGATTGTCTCTTTGTGTGTTGTGTCCGTTTTCCGC 898 consensus_7478#1 ------------------------------------------------------------ consensus_7478#0 CACAGCATCGCAAAGGTTCACGGGCATTCGTTTCTATCACACTCCCCTTTAGCCGCGCTA 958 consensus_7478#1 ------------------------------------------------------------ consensus_7478#0 AGTATGCCTCATAAAAGCAGATAATCGATGGCATAGCAAAGAGAGTACGTAGCAAGAGAT 1018 consensus_7478#1 ------------------------------------------------------------ consensus_7478#0 TTTGAAACAAATAAACAGCTATATGGTAAAGTTAATCAAAAGTATGACTGACATATAGGC 1078 consensus_7478#1 ------------------------------------------------------------ consensus_7478#0 CCGCCCCTCCCTGTGTGGCACTCATATCTCGTTACTCTGTGTTACGCCTAATGTATTAAC 1138 consensus_7478#1 ------------------------------------------------------------ consensus_7478#0 TAAACAAAACAAAATCATAAAGCATAAGGGCATATGTAAGCTAACGTGCGCTGCTGACGA 1198 consensus_7478#1 ------------------------------------------------------------ consensus_7478#0 TTGCGTACCGGTTGCGCAAACCACACATACACATTGGAAATGCGCACAGTGCGAACGCAA 1258 consensus_7478#1 ------------------------------------------------------------ consensus_7478#0 ACATTCGAAACAATAGCTAATAATGTATGCACAGAGCATCACCCCGCGTGTCCGCCCAGG 1318 consensus_7478#1 ------------------------------------------------------------ consensus_7478#0 CAAAAGGCAGGCAGAGGGCGGCAATATCTGTAAACAGCAGTTTTGATCGATTGTGTGCGA 1378 consensus_7478#1 ------------------------------------------------------------ consensus_7478#0 AGTGAGAGGAGGGCGGCGGTGGCGAAATGAGTGTAAATGTAAGCGAATCGATTCTCGATG 1438 consensus_7478#1 ------------------------------------------------------------ consensus_7478#0 TAACGCGCAGACTTATTACTAAAGTAGAGTAAAGAGGGAGATTATGCAAGCATAAATCAA 1498 consensus_7478#1 ------------------------------------------------------------ consensus_7478#0 ATCCGTAAATAAGTGTGNTAAACATTATAATTCGAAAATAAAA 1541 consensus_7478#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||