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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7484#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1212 fasta sequence
[CCGCGGACGCGTGGGGTGCTGGCTTGTTTTCGCTCGTGCATGAATTTTGAATTTTGGTTTTGGAAAGGAAAATGCAAAATACACCCAAGCGACCCATCCCGCCTGCTGTACAGACGCTCGTGGGCTGGATCGGTCCGGTGCGAAAGATGTCTGGATCGTAGAGAAGCTACGACAGAGGGTTGTAGTTATTCCGCATCAAAGACTACCAACCGCATTAGTTGTTTTTTCGATTTTAATCCGGTAAAGCAAGCCCAATAATCCAATAAGGCATGCTCGTTTGTGCGACCAAACGCATAATTTACTCTCTACAGCACGTTGTGTGTGTGTGGTAAAGGGAGATAGCAGTAGTCGGTCGCGCTAAACCCAACATTGTTTGACTGCTTTGAGAACTTATATAATATCGTTCGTTTTCGCTATGAAACCAAAATGAGCAACAACAAAAAAAAAAGAGAACGTCAAGGTATTTAAAGGTATTAGTTTTATGTAAAAAACACTCCCAAAGGATCCACATAGAGACGCACACAAAAAAAACGACCCAAGGCAGCTTCTTTCGCTTCTCGCTGATCGAAAACGAAAACATTAACAAACAGACCACGGGGGAAAGTAACGATTTTTGTTAGGTTTTTCATAGGGTTTAGGTTATATTTTAAATGGCACGCAGCGGCTAGGAACTAATTTTATCCCTAAGGCAGGACATTTCGGGCGCGTTTTAGGTTAGTGCTTTTGGTTAATGTGTTGCTTCAAAAGCAATTCCGCTTCCTTACCGACACGTCCCTGCTGTATGACGTTTGCTTGTTTTAAGGTTTGTTTGCGTAACCGGAACCGTGTTCGGGCCCACGAGTTAGTTTTATTCTATCTCTGTTTGCTCTATCCTGCTGTCATTTTTATCAGTTTAAATTATTTAACTTCCTTTAACTTACGAGACACTAGGCAAACATCGCACGAGTGTGATGGAGAACATTCAGAATTGAGTGCAATGCAGCCGAAAAGATGTTTTAAATGAGTGTTTGAACTGGGAATAACAGGCTCAATGTAACTTTTTTTTTGCTTTGGAAAAGCACGATTTTTTTTATCATACTGAGCAGCAATATTATATCATTTCCCCCAATTTGGGCTGCTACTCCATTCCAAATCTGCCCCCACGAGCGAAACAGCCACAGGACACGAGGGGCTAGATTGACGAACGAACAGTTAAAATAGAGAGTTTGTGAT]
[+] EMBL BM611388 [CCGCGGACGCGTGGGGTGCTGGCTTGTTTTCGCTCGTGCATGAATTTTGAATTTTGGTTTTGGAAAGGAAAATGCAAAATACACCCAAGCGACCCATCCCGCCTGCTGTACAGACGCTCGTGGGCTGGATCGGTCCGGTGCGAAAGATGTCTGGATCGTAGAGAAGCTACGACAGAGGGTTGTAGTTATTCCGCATCAAAGACTACCAACCGCATTAGTTGTTTTTTCGATTTTAATCCGGTAAAGCAAGCCCAATAATCCAATAAGGCATGCTCGTTTGTGCGACCAAACGCATAATTTACTCTCTACAGCACGTTGTGTGTGTGTGGTAAAGGGAGATAGCAGTAGTCGGTCGCGCTAAACCCAACATTGTTTGACTGCTTTGAGAACTTATATAATATCGTTCGTTTTCGCTATGAAACCAAAATGAGCAACAACAAAAAAAAAAGAGAACGTCAAGGTATTTAAAGGTATTAGTTTTATGTAAAAAACACTCCCAAAGGATCCACATAGAGACGCACACAAAAAAAACGACCCAAGGCAGCTTCTTTCGCTTCTCGCTGATCGAAAACGAAAACATTAACAAACAGACCACGGGGGAAAGTAACGATTTTTGTTAGGTTTTTCATAGGGTTTAGGTTATATTTTAAATGGC ]
[+] EMBL BX625585 [ GCTTCTTTCGCTTCTCGCTGATCGAAAACGAAAACATTAACAAACAGACCAC GGGGAAAGTAACGATTTTTGTTAGGTTTTTCATA GGTTTAGGTTATATTTTAAATGGCACGCAGCGGCTAGGAACTAATTTTATCCCTAAGGCAGGACATTTCGGGCGCGTTTTAGGTTAGTGCTTTTGGTTAATGTGTTGCTTCAAAAGCAATTCCGCTTCCTTACCGACACGTCCCTGCTGTATGACGTTTGCTTGTTTTAAGGTTTGTTTGCGTAACCGGAACCGTGTTCGGGCCCACGAGTTAGTTTTATTCTATCTCTGTTTGCTCTATCCTGCTGTCATTTTTATCAGTTTAAATTATTTAACTTCCTTTAACTTACGAGACACTAGGCAAACATCGCACGAGTGTGATGGAGAACATTCAGAATTGAGTGCAATGCAGCCGAAAAGATGTTTTAAATGAGTGTTTGAACTGGGAATAACAGGCTCAATGTAACTTTTTTTTTGCTTTGGAAAAGCACGATTTTTTTTATCATACTGAGCAGCAATATTATATCATTTCCCCCAATTTGGGCTGCTACTCCATTCCAAATCTGCCCCCACGAGCGAAACAGCCACAGGACACGAGGGGCTAGATTGACGAACGAACAGTTAAAATAGAGAGTTTGTGAT]
consensusID : consensus_7484#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 726 fasta sequence
[ACCGCCCCTCCCCCCCAACACCCCAGACCACGAACGGCGTCCAACGTCTCTAGCAAGCAATGGGGCGGGGGCAAAACCTCCGACGGAAGCACTTCAAAATGGCGCAGCCAGAACTGAACGATTTAATTATTTCTTGTTTAATTTGTTTTACGTTTACATCGTCCTCTCGTCCTCATCCCGCCTTCCAGTGCCAGCTTGGGGGTACAAAATCAGGGCTGAACCCTTCCTGTTCGCATACCTCTACCCGACGGCACCTTGATTTTTTCTCTCCTTTTTGACCAAGGTCCGCTGGTGTGTGTGATGGCTTGTTTTCGCTCGTGCATGAATTTTGAATTTTG-GTTTTGGAAAGGAAAATGCAAAATACACCCAACCCACCCATCCCCCCTGCTGTACAGACGCTCGTGGGCTGGATCGGTCCGGTACGAAAGATTTCTGCATCGTAAAGAAGCTACGACAGAGGGTTGTAGTTATTCCGCATCAAAGACTACCAACCGCATTAGTTGTTTTTTCGATTTTAATCCGGTAAAGCAAGCCCAATAATCCAATAAGGCATGCTCGTTTGTGCGACCAAACGCATAATTTACTCTCTACAGCACGTTGTGTGTGTGTGGTAAAGGGAGATAGCAGTAGTCGGTCGCGCTAAACCCAACATTGTTTGACTGCTTTGAGAACTTATATAATATCGTTCGTTTTCGCTATGAAACCAAAATGAGCAACAACAAAAAA]
[+] EMBL BM576540 [ACCGCCCCTCCCCCCCAACACCCCAGACCACGAACGGCGTCCAACGTCTCTAGCAAGCAATGGGGCGGGGGCAAAACCTCCGACGGAAGCACTTCAAAATGGCGCAGCCAGAACTGAACGATTTAATTATTTCTTGTTTAATTTGTTTTACGTTTACATCGTCCTCTCGTCCTCATCCCGCCTTCCAGTGCCAGCTTGGGGGTACAAAATCAGGGCTGAACCCTTCCTGTTCGCATACCTCTACCCGACGGCACCTTGATTTTTTCTCTCCTTTTTGACCAAGGTCCGCTGGTGTGTGTGATGGCTTGTTTTCGCTCGTGCATGAATTTTGAATTTTG GTTTTGGAAAGGAAAATGCAAAATACACCCAACCCACCCATCCCCCCTGCTGTACAGACGCTCGTGGGCTGGATCGGTCCGGTACGAAAGATTTCTGCATCGTAAAGAAGCTACGACAGAGGGTTGTAGTTATTCCGCATCAAAGACTACCAACCGCATTAGTTGTTTTTTCGATTTTAATCCGGTAAAGCAAGCCCAATAATCCAATAAGGCATGCTCGTTTGTGCGACCAAACGCATAATTTACTCTCTACAGCACG ]
[+] EMBL AGA282264 [ GTCCTCATCCCGGCTTCCAGTGCCAGCTTGGGGGTACAAAATCAGGGCTGAACCCTTCCTGTTCGCATACCTCTACCCGACGGCACCTTGATTTTTTCTCTCCTTTTTGACCAAGGTCCGCTGGTGTGTGTGATGGCTTGTTTTCGCTCGTGCATGAATTTTGAATTTTGNGTTTTGG AAGGAAAATGGAAAATACACCCAACCCATCCccc ]
[-] EMBL BM642519 [ CCCAACCCACCCATCCCCCCTGCTGTACAGACGCTCGTGGGCTGGATCGGTCCGGTACGAAAGATTTCTGCATCGTAAAGAAGCTACGACAGAGGGTTGTAGTTATTCCGCATCAAAGACTACCAACCGCATTAGTTGTTTTTTCGATTTTAATCCGGTAAAGCAAGCCCAATAATCCAATAAGGCATGCTCGTTTGTGCGACCAAACGCATAATTTACTCTCTACAGCACGTTGTGTGTGTGTGGTAAAGGGAGATAGCAGTAGTCGGTCGCGCTAAACCCAACATTGTTTGACTGCTTTGAGAACTTATATAATATCGTTCGTTTTCGCTATGAAACCAAAATGAG ]
[-] EMBL AGA280566 [ ctTGCTGAACAGACGCTCGTGGGCAGAATCGGTCCGGTACGAAAGATTTCTGCATCGTAAAGAAGCTACGACAGAGGGTTGTAGTTATTCCGCATCAAAGACTACCAACCGTATTAGTTGTTTTGTCGATTTTAATCCGGTAAAGCAAGCCCAATAATCCAATAAGGCATGCTCGTTTGTGCGACAAAACGCATAATTTACTCTCTACAGCACGT TGTGTGTGTGGTAAAGGGAGATAGCAGTAGTCGGTCGCGCTAAACCCAACATTGTTTGACTGCTTTGAGAACTTATATAATATCGTTCGTTTTCGCTATGAAACCAAAATGAGCAACAACAAAAAA]
consensusID : consensus_7484#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence
[CCGGGCATGNCTCAGGCCAGAATCGCCACGAGGTTAAACGCATAATTTACTCTCTACAGGCACGTTGTGTGTGTGGTAAAGGGAGATAGCACGTAGTCGGTCGCGCTAAACCCAAGCATTGTTTGACTGCTTTGAGAACTTATATAAGTATCGTTCGTTTTCGCTATGAAACCAAAATGAGCAACAACAAAAGAAAAGATAACGTCAAGGGTATTTAAAGGGTAGTTAGTTTGTATGTAAAAAACACTCCCAAAGGATCCACACAGAGACGCACACAAGAAGAGAGAAAGCGAGCCAAGGGCAGCGTTCTTTCGCTTCTCGGCTGATCGAANAACGAAAGACATTAAGCGAAGACAGACCACGGGGAAAGTAACGATTTTTGTGTTAGCGTTGGTTCAGTAGGG]
[+] EMBL BX469116 [CCGGGCATGNCTCAGGCCAGAATCGCCACGAGGTTAAACGCATAATTTACTCTCTACAGGCACGTTGTGTGTGTGGTAAAGGGAGATAGCACGTAGTCGGTCGCGCTAAACCCAAGCATTGTTTGACTGCTTTGAGAACTTATATAAGTATCGTTCGTTTTCGCTATGAAACCAAAATGAGCAACAACAAAAGAAAAGATAACGTCAAGGGTATTTAAAGGGTAGTTAGTTTGTATGTAAAAAACACTCCCAAAGGATCCACACAGAGACGCACACAAGAAGAGAGAAAGCGAGCCAAGGGCAGCGTTCTTTCGCTTCTCGGCTGATCGAANAACGAAAGACATTAAGCGAAGACAGACCACGGGGAAAGTAACGATTTTTGTGTTAGCGTTGGTTCAGTAGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7484#0 ------------------------------------------------------------
consensus_7484#2 ------------------------------------------------------------
consensus_7484#1 ACCGCCCCTCCCCCCCAACACCCCAGACCACGAACGGCGTCCAACGTCTCTAGCAAGCAA 60
consensus_7484#0 ------------------------------------------------------------
consensus_7484#2 ------------------------------------------------------------
consensus_7484#1 TGGGGCGGGGGCAAAACCTCCGACGGAAGCACTTCAAAATGGCGCAGCCAGAACTGAACG 120
consensus_7484#0 ------------------------------------------------------------
consensus_7484#2 ------------------------------------------------------------
consensus_7484#1 ATTTAATTATTTCTTGTTTAATTTGTTTTACGTTTACATCGTCCTCTCGTCCTCATCCCG 180
consensus_7484#0 ------------------------------------------------------------
consensus_7484#2 ------------------------------------------------------------
consensus_7484#1 CCTTCCAGTGCCAGCTTGGGGGTACAAAATCAGGGCTGAACCCTTCCTGTTCGCATACCT 240
consensus_7484#0 ------------------------------------------CCGCGGACGCGTGGGGTG 18
consensus_7484#2 ------------------------------------------------------------
consensus_7484#1 CTACCCGACGGCACCTTGATTTTTTCTCTCCTTTTTGACCAAGGTCCGCTGGTGTGTGTG 300
consensus_7484#0 CTGGCTTGTTTTCGCTCGTGCATGAATTTTGAATTTTGGTTTTGGAAAGGAAAATGCAAA 78
consensus_7484#2 ------------------------------------------------------------
consensus_7484#1 ATGGCTTGTTTTCGCTCGTGCATGAATTTTGAATTTTGGTTTTGGAAAGGAAAATGCAAA 360
consensus_7484#0 ATACACCCAAGCGACCCATCCCGCCTGCTGTACAGACGCTCGTGGGCTGGATCGGTCCGG 138
consensus_7484#2 ------------------------------------------------------------
consensus_7484#1 ATACACCCAACCCACCCATCCCCCCTGCTGTACAGACGCTCGTGGGCTGGATCGGTCCGG 420
consensus_7484#0 TGCGAAAGATGTCTGGATCGTAGAGAAGCTACGACAGAGGGTTGTAGTTATTCCGCATCA 198
consensus_7484#2 ------------------------------------------------------------
consensus_7484#1 TACGAAAGATTTCTGCATCGTAAAGAAGCTACGACAGAGGGTTGTAGTTATTCCGCATCA 480
consensus_7484#0 AAGACTACCAACCGCATTAGTTGTTTTTTCGATTTTAATCCGGTAAAGCAAGCCCAATAA 258
consensus_7484#2 -----------------------------------------------------CCGGGCA 7
consensus_7484#1 AAGACTACCAACCGCATTAGTTGTTTTTTCGATTTTAATCCGGTAAAGCAAGCCCAATAA 540
** *
consensus_7484#0 TCCAATAAGGCATGCTCGTTTGTGCGACCAAACGCATAATTTACTCTCTACAG-CACGTT 317
consensus_7484#2 TGNCTCAGGCCAGAATCGCC-ACGAGGTTAAACGCATAATTTACTCTCTACAGGCACGTT 66
consensus_7484#1 TCCAATAAGGCATGCTCGTTTGTGCGACCAAACGCATAATTTACTCTCTACAG-CACGTT 599
* * * ** *** * * ************************ ******
consensus_7484#0 GTGTGTGTGTGGTAAAGGGAGATAGCA-GTAGTCGGTCGCGCTAAACCCAA-CATTGTTT 375
consensus_7484#2 GTGTGTGT--GGTAAAGGGAGATAGCACGTAGTCGGTCGCGCTAAACCCAAGCATTGTTT 124
consensus_7484#1 GTGTGTGTGTGGTAAAGGGAGATAGCA-GTAGTCGGTCGCGCTAAACCCAA-CATTGTTT 657
******** ***************** *********************** ********
consensus_7484#0 GACTGCTTTGAGAACTTATATAA-TATCGTTCGTTTTCGCTATGAAACCAAAATGAGCAA 434
consensus_7484#2 GACTGCTTTGAGAACTTATATAAGTATCGTTCGTTTTCGCTATGAAACCAAAATGAGCAA 184
consensus_7484#1 GACTGCTTTGAGAACTTATATAA-TATCGTTCGTTTTCGCTATGAAACCAAAATGAGCAA 716
*********************** ************************************
consensus_7484#0 CAACAAAAAAAAAAGAGAACGTCAAGG-TATTTAAAGGT--ATTAGTTT-TATGTAAAAA 490
consensus_7484#2 CAACAAAAGAAAA-GATAACGTCAAGGGTATTTAAAGGGTAGTTAGTTTGTATGTAAAAA 243
consensus_7484#1 CAACAAAAAA-------------------------------------------------- 726
******** *
consensus_7484#0 ACACTCCCAAAGGATCCACATAGAGACGCACACAAAAA------AAACGACCCAAGG-CA 543
consensus_7484#2 ACACTCCCAAAGGATCCACACAGAGACGCACACAAGAAGAGAGAAAGCGAGCCAAGGGCA 303
consensus_7484#1 ------------------------------------------------------------
consensus_7484#0 GC-TTCTTTCGCTTCTCG-CTGATCGAAAA-CGAAA-ACATTAAC---AAACAGACCACG 596
consensus_7484#2 GCGTTCTTTCGCTTCTCGGCTGATCGAANAACGAAAGACATTAAGCGAAGACAGACCACG 363
consensus_7484#1 ------------------------------------------------------------
consensus_7484#0 GGGGAAAGTAACGATTTTTGTTAGGTTTTTCATAGGGTTTAGGTTATATTTTAAATGGCA 656
consensus_7484#2 GGG-AAAGTAACGATTTTTGTGTTAGCGTTGGTTCAGTAGGG------------------ 404
consensus_7484#1 ------------------------------------------------------------
consensus_7484#0 CGCAGCGGCTAGGAACTAATTTTATCCCTAAGGCAGGACATTTCGGGCGCGTTTTAGGTT 716
consensus_7484#2 ------------------------------------------------------------
consensus_7484#1 ------------------------------------------------------------
consensus_7484#0 AGTGCTTTTGGTTAATGTGTTGCTTCAAAAGCAATTCCGCTTCCTTACCGACACGTCCCT 776
consensus_7484#2 ------------------------------------------------------------
consensus_7484#1 ------------------------------------------------------------
consensus_7484#0 GCTGTATGACGTTTGCTTGTTTTAAGGTTTGTTTGCGTAACCGGAACCGTGTTCGGGCCC 836
consensus_7484#2 ------------------------------------------------------------
consensus_7484#1 ------------------------------------------------------------
consensus_7484#0 ACGAGTTAGTTTTATTCTATCTCTGTTTGCTCTATCCTGCTGTCATTTTTATCAGTTTAA 896
consensus_7484#2 ------------------------------------------------------------
consensus_7484#1 ------------------------------------------------------------
consensus_7484#0 ATTATTTAACTTCCTTTAACTTACGAGACACTAGGCAAACATCGCACGAGTGTGATGGAG 956
consensus_7484#2 ------------------------------------------------------------
consensus_7484#1 ------------------------------------------------------------
consensus_7484#0 AACATTCAGAATTGAGTGCAATGCAGCCGAAAAGATGTTTTAAATGAGTGTTTGAACTGG 1016
consensus_7484#2 ------------------------------------------------------------
consensus_7484#1 ------------------------------------------------------------
consensus_7484#0 GAATAACAGGCTCAATGTAACTTTTTTTTTGCTTTGGAAAAGCACGATTTTTTTTATCAT 1076
consensus_7484#2 ------------------------------------------------------------
consensus_7484#1 ------------------------------------------------------------
consensus_7484#0 ACTGAGCAGCAATATTATATCATTTCCCCCAATTTGGGCTGCTACTCCATTCCAAATCTG 1136
consensus_7484#2 ------------------------------------------------------------
consensus_7484#1 ------------------------------------------------------------
consensus_7484#0 CCCCCACGAGCGAAACAGCCACAGGACACGAGGGGCTAGATTGACGAACGAACAGTTAAA 1196
consensus_7484#2 ------------------------------------------------------------
consensus_7484#1 ------------------------------------------------------------
consensus_7484#0 ATAGAGAGTTTGTGAT 1212
consensus_7484#2 ----------------
consensus_7484#1 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||