These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7485#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1120 fasta sequence [CTGGTTTCGACAGAAAAGCAACACGATACACATGCAAACACATAAGCGTTTTCACTGTAAACTTCTGAAAAGGTTCAATAAGTTACTGAATAAAAACGAAACAAAACATGGTCGAACATTCAAACAGTTGAAATGCAACACTAGCCACCAGGGGTGTTAACCGTGTAGAGAAAAAGCCTCCTCCAATTATTGGACGTAATGGATTAACGGCAAAAGGCACGGAAAGTGGAGCATGAGCACTGTTAAAAACGACATATTACAAACACAAACACCGGTGGATGTAAATCTGGAAATCTGGAAGCCAAAAACTGCAAACAACAAAAAAAACACAAAAGCAACACACAGAATGTAAAGGCCAATATAAATTAGATAAATATATATATATATTATATACAAACATACACAAATTCGCACAAGAACGACGCGTTAAGTAACATGCAGGATTAGGGAGGGAAAGATGATGGAAAGTAGTTACTTAAAAAA-TGAAACCAAGTCGTACACTCGAACTCGAACGAGAAGAAGGGGCAGGGGAGGAGATACTTATACAGATATTCTTAGTATTTAACAATTAAACAAGCAAAAAACAGCAAC-AAAAACAGTTCAAATTACGGACAGCGATCCATTTTCCAACGCGACGTGTGTGTTATCTTTTCAGCGTTTGACTTTGTTTTACACTG--CTTTTTTGCATTGTGTTTTTACTTTGGTGTCTGATGTTTGAGTTTGATTACAATATACCAGATGTTTGGAATTGGAAAATAACCACAAAGCGATGTAGTAAAACAATGGTTTTAAAATACTTTTTTAGATCTCCTCTTTCACACCCACAGTCAACGCGTAATTGCATCACATCATTTTAACGATGATCAGGCCCCATTTGGTTGCGTTTACTCGATTACTCTCCATTAGATTGGGCCACAATGGGAATAAATTATATAGAAGAAAAAGAAAAGAAATACAATAACTGTAGCATAAACAATAGATCCATAATACACACACACACACTACCAGTGAGATAGAGCGAAAGACCGTCGAGCGTCAGACAGCCACAGCAACAGCAGCAGAAACATGAAAATTTCAAATATCAAATTTTCTTAATAAAACATATTCTTTTGTGATATGT] [+] EMBL BX614559 [CTGGTTTCGACAGAAAAGCAACACGATACACATGCAAACACATAAGCGTTTTCACTGTAAACTTCTGAAAAGGTTCAATAAGTTACTGAATAAAAACGAAACAAAACATGGTCGAACATTCAAACAGTTGAAATGCAACACTAGCCACCAGGGGTGTTAA ] [+] EMBL BX611903 [ CACTGTAAACTTCTGAAAAGGTTCAATAAGTTACTGAATAAAAACGAAACAAAACATGGTCGAACATTCAAACAGTTGAAATGCAACACTAGCCACCAGGTGTGTTAACCGTGTAGAGAAAAAGCCTCCTCCAATTATTGGACGTAATGGATTAACGGCAAAAGGCACGGAAAGTGGAGCATGAGCACTGTTAAAAACGACATATTACAAACACAAACACCGGTGGATGTAAATCTGGAAATCTGGAAGCCAAAAACTGCAAACAACAAAAAAAACACAAAAGCAACACACAGAATGTAAAGGCCAATATAAATTAGATAAATATATATATATATTATATACAAACATACACAAATTCGCACAAGAACGACGCGTTAAGTAACATGCAGGATTAGGGAGGGAAAGATGATGGAAAGTAGTTACTTAAAAAA TGAAACCAAGTCGTACACTCGAACTCGAACGAGAAGAAGGGGCAGGGGAGGAGATACTTATACAGATATTCTTAGTATTTAACAATTAAACAAGCAAAAAACAGCAAC AAAAACAGTTCAAATTACGGACAGCGATCC ] [+] EMBL BX616694 [ TTAGATAAATATATATATATATTATATACAAACATACACAAATTCGCACAAGAACGACGCGTTAAGTAACATGCAGGATTAGGTAGGGAAAGATGATGGAAAGTAGTTACTTAAAAAA TGAAACCAAGTCGTACACTCGAACTCGAACGAGAAGAAGGGGCAGGGTAGGAGATACTTATACAGATATTCTTAGTATTTAACAATTAAACAAGCAAAAAACAGCAAC AAAAACAGTTCAAATTACGGACAGCGATCCATTTTCCAACGCGACGTGTGTGTTATCTTTTCAGCGTTTGACTTTGTTTTACACTG CTTTTTTGCATTGTGTTTTTACTTTGGTGTCTGATGTTTGAGTTTGATTACAATATACCAGATGTTTGGAATTGGAAAATAACCACAAAGCGATGTAGTAAAACAATGGTTTTAAAATACTTTTTTAGATCTCCTCTTTCACACCCACAGTCAACGCGTAATTGCATCACATCATTTTAACGATGATCAGGCCCCATTTGGTTGCGTTTACTCGATTACTCTCCATTAGATTGGGCCACAATGGGAATAAATTATATAGAAGAAAAAGAAAAGAAATACAATAACTGTAGCATAAACAATAGATCCATAATACACACACACACACTACCAGTGAGATAGAGCGAAAGACCGTCGAGCGTCAGACAGCCACAGCAACAGCAGCAGAAACATGAAAATTTCAAATATCAAATTTTCTTAATAAAACATATTCTTT ] [+] EMBL BX625508 [ gATAAATATATATATTATATACAAACATACACAAATTCACACAAGAACGACGCGTTAAGTAACATGCAGGATTAGGGAGGGAAAGATGATGGAAAGTAGTTACTTAAAAAAGTGAAACCTAGTCGTACACTCGAACTCGAACGAGAAGGAGGGGCAGGGGAGGAGATACTTATACAGATATTCTTAGTATTTAACAATTAAACAAGCAAAACACAGCAACAAAAAACAGTTCAAATTACGGATAGCGATCCATTTTCCAATGCGACGTGTGTGTTATCTTTTCAGCGTTTGGCTTTGTTTTACACTGCTCTTTTTTGCAATACGTTTTTACTTTGGTATCTGATGTTTGAGTTTGATTACAATATACCAGGTGTTTGGAATTGGAAAATAACCACAAAGCGATGTAGTAAAACAATGGTTTTAAAATACTTTTTTAGATCTCCTCTTTCACACCCACAGTCAATGCGTAATTGCATTACATCATTTTAACGATGATCAGGCCCCATTTGGTTGCGTTTACTCGATTACTCTCCATTAGATTGGGCCACAATGGGAATAAATTATATAGAAGAAAAAGAACAGAAATACAATAACTGTAGCATAAACAATAGA ] [+] EMBL BX613102 [ GTTTGGAATTGGAAAATAACCACAAAGCGATGTAGTAAAACAATGGTTTTAAAATACTTTTTTAGATCTCCTCTTTCACACCCACAGTCAACGCGTAATTGCATCACATCATTTTAACGATGATCAGGCCCCATTTGGTTGCGTTTACTCGATTACTCTCCATTAGATTGGGCCACAATGGGAATAAATTATATAGAAGAAAAAGAAAAGAAATACAATAACTGTAGCATAAACAATAGATCCATAATACACACACACACACTACCAGTGAGATAGAGCGAAAGACCGTCGAGCGTCAGACAGCCACAGCAACAGCAGCAGAAACATGAAAATTTCAAATATCAAA TTTCTTAATAAAACATATTCTTTTGTGATATGT] consensusID : consensus_7485#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1017 fasta sequence [AATTCCCGCGGTTAAATGGCACGGAAAGTGGAGCCTGAGCACTGTTAAAACGACATATTACAAACACAAACACCGGTGGATGTAAATCTGGAAATCTGGAAGCCAAAAACTGCAAACAACAAAAAAAACACAAAAGCAATACACAGAATGTAAAGGCCAATATAAATTAGATAACATATATATATATATTATATACAAACATACACAAATTCGCACAAGACACGACGCGTTAAGTAACATGCNGGATTNAGCGGAGGGCANCAGATGNTGGCNCNGTNAGTNTACTTACACAAATGACCCCAAGTCGCTACCACCTCGAACTCGANAACGAGGAAGAAGGGGCCAGGGCGAGGGNCGCATACCTTATACAGATAATTCTTAGTCATCTTAACCAATTTCACAACAAAGCCACACAACAACCAGCACACACAAAAACCAGTTCAACATTAACGGAACAGCGATCCCAATTTTTCCCNANCAGCGCACCGGCTGGTNGTAGTAAAAATCTTATCATCTNCAACGCCGGTATCATGGACCTTTATTGGTTCTTTACCAACCTGCTATATCATCGCACTATTGTGCGTACAANTCACCTCATCANNGGTCGNTCCTCGCANTTGTAACTAGGACGGTATCNAGCATTATACCANACTAATAGCCCCACTANACTTGGTTTTGGGNGCAAACGTNAGGCNACAAAANATTAAAGCCCCAACCCAACATACNAAGAACCNGACATTGGTTTCAAGGNTTTACAACAAAAAACCACCACAGTGGGGGGCGTTGTTGTTACCAACACACANTCAACACCTTNTTTTGATNTCACGGGAATTACCTTACCGCCTACCCTTTTATGAGCAAACATGACCACGCNCCANCNAGGTACCAAAACGCNGCAACGGGTTTAAAAGTTCTGGGCCCGCTTTACCACACCACCTTGCCNATTCTTTTGCAAAGAACGGCAGCATTGNCAATTTCCCNANGGGCCCCCCCCCATTTAGGGGGGTCTGACGGNTN] [+] EMBL AL692297 [AATTCCCGCGGTTAAATGGCACGGAAAGTGGAGCCTGAGCACTGTTAAAACGACATATTACAAACACAAACACCGGTGGATGTAAATCTGGAAATCTGGAAGCCAAAAACTGCAAACAACAAAAAAAACACAAAAGCAATACACAGAATGTAAAGGCCAATATAAATTAGATAACATATATATATATATTATATACAAACATACACAAATTCGCACAAGACACGACGCGTTAAGTAACATGCNGGATTNAGCGGAGGGCANCAGATGNTGGCNCNGTNAGTNTACTTACACAAATGACCCCAAGTCGCTACCACCTCGAACTCGANAACGAGGAAGAAGGGGCCAGGGCGAGGGNCGCATACCTTATACAGATAATTCTTAGTCATCTTAACCAATTTCACAACAAAGCCACACAACAACCAGCACACACAAAAACCAGTTCAACATTAACGGAACAGCGATCCCAATTTTTCCCNANCAGCGCACCGGCTGGTNGTAGTAAAAATCTTATCATCTNCAACGCCGGTATCATGGACCTTTATTGGTTCTTTACCAACCTGCTATATCATCGCACTATTGTGCGTACAANTCACCTCATCANNGGTCGNTCCTCGCANTTGTAACTAGGACGGTATCNAGCATTATACCANACTAATAGCCCCACTANACTTGGTTTTGGGNGCAAACGTNAGGCNACAAAANATTAAAGCCCCAACCCAACATACNAAGAACCNGACATTGGTTTCAAGGNTTTACAACAAAAAACCACCACAGTGGGGGGCGTTGTTGTTACCAACACACANTCAACACCTTNTTTTGATNTCACGGGAATTACCTTACCGCCTACCCTTTTATGAGCAAACATGACCACGCNCCANCNAGGTACCAAAACGCNGCAACGGGTTTAAAAGTTCTGGGCCCGCTTTACCACACCACCTTGCCNATTCTTTTGCAAAGAACGGCAGCATTGNCAATTTCCCNANGGGCCCCCCCCCATTTAGGGGGGTCTGACGGNTN] consensusID : consensus_7485#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 724 fasta sequence [CCGCGGTTATAATATATATATATATTATATACAAACATACACAAATTCGCACAAGAACGACGCGTTAAGTAACATGCAGGATTAGGGAGGGAAAGATGATGGAAAGTAGTTACTTAAAAAATGAAACCAAGTCGTACACTCGAACTCGAACGAGAAGAAGGGGCAGGGGGAGGAGATACTTATACAGATATTCTTAGTATTTAACAATTAAACAAGCAAAAAACAGCAACAAAAACAGTTCAAATTACGGACAGCGATCCATTTTCCAACGCGACGTGTGTGTATCTCTCTCAGCCGTCTTGACTTTGTATACTTACACTGCTTNNCTANGCATTGCTGCTACANAACCTCTNGGCTGTCTGCATGTNCNGAGTNATGATTACAATATACCAGATGTCNCNGGACACTCGGAAAATAACCACAAAGCGATGTAGTCAAAACAATTGGTTTTAAAATACTTNCGAAGATCTCCTCTTTCACAANCACACAGTCAACGCGTAATTGCATCACATCATTGNTANACGATGATCAGGCCCATTATGGTTGCGTACAACTCGACATACTCTCCATNAGCATGGGCCACCAATGGGANTAAATTCATATNGAAGAAAAAGAAAAGAAATACAATAACTGTAGCATAAACAATAGATCCATAATACACANACACACACTACCAGGTGAGCATANAGCGAANGACCGCGAGCGTCAGACAGCCACAGCANAG] [+] EMBL AL694448 [CCGCGGTTATAATATATATATATATTATATACAAACATACACAAATTCGCACAAGAACGACGCGTTAAGTAACATGCAGGATTAGGGAGGGAAAGATGATGGAAAGTAGTTACTTAAAAAATGAAACCAAGTCGTACACTCGAACTCGAACGAGAAGAAGGGGCAGGGGGAGGAGATACTTATACAGATATTCTTAGTATTTAACAATTAAACAAGCAAAAAACAGCAACAAAAACAGTTCAAATTACGGACAGCGATCCATTTTCCAACGCGACGTGTGTGTATCTCTCTCAGCCGTCTTGACTTTGTATACTTACACTGCTTNNCTANGCATTGCTGCTACANAACCTCTNGGCTGTCTGCATGTNCNGAGTNATGATTACAATATACCAGATGTCNCNGGACACTCGGAAAATAACCACAAAGCGATGTAGTCAAAACAATTGGTTTTAAAATACTTNCGAAGATCTCCTCTTTCACAANCACACAGTCAACGCGTAATTGCATCACATCATTGNTANACGATGATCAGGCCCATTATGGTTGCGTACAACTCGACATACTCTCCATNAGCATGGGCCACCAATGGGANTAAATTCATATNGAAGAAAAAGAAAAGAAATACAATAACTGTAGCATAAACAATAGATCCATAATACACANACACACACTACCAGGTGAGCATANAGCGAANGACCGCGAGCGTCAGACAGCCACAGCANAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7485#0 CTGGTTTCGACAGAAAAGCAACACGATACACATGCAAACACATAAGCGTTTTCACTGTAA 60 consensus_7485#2 ------------------------------------------------------------ consensus_7485#1 ------------------------------------------------------------ consensus_7485#0 ACTTCTGAAAAGGTTCAATAAGTTACTGAATAAAAACGAAACAAAACATGGTCGAACATT 120 consensus_7485#2 ------------------------------------------------------------ consensus_7485#1 ------------------------------------------------------------ consensus_7485#0 CAAACAGTTGAAATGCAACACTAGCCACCAGGGGTGTTAACCGTGTAGAGAAAAAGCCTC 180 consensus_7485#2 ------------------------------------------------------------ consensus_7485#1 ------------------------------------------------------------ consensus_7485#0 CTCCAATTATTGGACGTAATGGATTAACGGCAAAAGGCACGGAAAGTGGAGCATGAGCAC 240 consensus_7485#2 ------------------------------------------------------------ consensus_7485#1 ------------------AATTCCCGCGGTTAAATGGCACGGAAAGTGGAGCCTGAGCAC 42 consensus_7485#0 TGTTAAAAACGACATATTACAAACACAAACACCGGTGGATGTAAATCTGGAAATCTGGAA 300 consensus_7485#2 ------------------------------------------------------------ consensus_7485#1 TGTTAAAA-CGACATATTACAAACACAAACACCGGTGGATGTAAATCTGGAAATCTGGAA 101 consensus_7485#0 GCCAAAAACTGCAAACAACAAAAAAAACACAAAAGCAACACACAGAATGTAAAGGCCAAT 360 consensus_7485#2 ------------------------------------------------------------ consensus_7485#1 GCCAAAAACTGCAAACAACAAAAAAAACACAAAAGCAATACACAGAATGTAAAGGCCAAT 161 consensus_7485#0 ATAAATTAGATA-AATATATATATATATTATATACAAACATACACAAATTCGCACAAGA- 418 consensus_7485#2 ---CCGCGGTTATAATATATATATATATTATATACAAACATACACAAATTCGCACAAGA- 56 consensus_7485#1 ATAAATTAGATAACATATATATATATATTATATACAAACATACACAAATTCGCACAAGAC 221 * ** ********************************************* consensus_7485#0 ACGACGCGTTAAGTAACATGCAGGATTAGG--GAGGGAAA--GATGATGGAA-AGTAG-- 471 consensus_7485#2 ACGACGCGTTAAGTAACATGCAGGATTAGG--GAGGGAAA--GATGATGGAA-AGTAG-- 109 consensus_7485#1 ACGACGCGTTAAGTAACATGCNGGATTNAGCGGAGGGCANCAGATGNTGGCNCNGTNAGT 281 ********************* ***** * ***** * **** *** ** consensus_7485#0 TTACTTAAA-AAATGAAACCAAGTCG-TACA--CTCGAACTCGAA--CGAG-AAGAAGGG 524 consensus_7485#2 TTACTTAAA-AAATGAAACCAAGTCG-TACA--CTCGAACTCGAA--CGAG-AAGAAGGG 162 consensus_7485#1 NTACTTACACAAATGACCCCAAGTCGCTACCACCTCGAACTCGANAACGAGGAAGAAGGG 341 ****** * ****** ******** *** *********** **** ******** consensus_7485#0 GCAGGGG-AGGAGATAC-----TTATACAGATA-TTCTTAGT-----------ATTTAAC 566 consensus_7485#2 GCAGGGGGAGGAGATAC-----TTATACAGATA-TTCTTAGT-----------ATTTAAC 205 consensus_7485#1 GCCAGGGCGAGGGNCGCATACCTTATACAGATAATTCTTAGTCATCTTAACCAATTTCAC 401 ** *** * * * *********** ******** **** ** consensus_7485#0 AATTAAACAA-GCAAAAAACAGCA---ACAAAAAC-AGTTCAA-ATTAC--GGACAGCGA 618 consensus_7485#2 AATTAAACAA-GCAAAAAACAGCA---ACAAAAAC-AGTTCAA-ATTAC--GGACAGCGA 257 consensus_7485#1 AACAAAGCCACACAACAACCAGCACACACAAAAACCAGTTCAACATTAACGGAACAGCGA 461 ** ** * * *** ** ***** ******** ******* **** * ******* consensus_7485#0 TCCA---TTTTCCAACGCGACGTGTGTGTTATCTTTTCAGCG--TTTGACTTTGT---TT 670 consensus_7485#2 TCCA---TTTTCCAACGCGACGTGTGTGTATCTCTCTCAGCCGTCTTGACTTTGTATACT 314 consensus_7485#1 TCCCAATTTTTCCCNANCAGCGCACCGGCTGGTNGTAGTAAAAATCTTATCATCT---NC 518 *** ****** * ** * * * * * consensus_7485#0 TACACTGCTTTTTTGCAT-TGTGTTTTTAC--------TTTGGTGTCTG-ATGTT-TGAG 719 consensus_7485#2 TACACTGCTTNNCTANGC-ATTGCTGCTACANAACCTCTNGGCTGTCTGCATGTNCNGAG 373 consensus_7485#1 AACGCCGGTATCATGGACCTTTATTGGTTCTTTACCAACCTGCTATATCATCGCACTA-- 576 ** * * * * * * * * * * * * * consensus_7485#0 TT-TGATTACAATATACCAGAT-GTTTGGAA----TTGGAAA-ATAACCACAAAGCGATG 772 consensus_7485#2 TNATGATTACAATATACCAGAT-GTCNCNGGACACTCGGAAA-ATAACCACAAAGCGATG 431 consensus_7485#1 TTGTGCGTACAANTCACCTCATCANNGGTCGNTCCTCGCANTTGTAACTAGGACGGTATC 636 * ** ***** *** ** * * * **** * * * ** consensus_7485#0 TAGT-AAAACAAT-GGTTTTAAAATACTTTTTTAGATCTCCTCTTTCACACCCACA--GT 828 consensus_7485#2 TAGTCAAAACAATTGGTTTTAAAATACTTNCGAAGATCTCCTCTTTCACAANCACACAGT 491 consensus_7485#1 NAGC-ATTATACC-ANACTAATAGCCCCACTANACTTGGTTTTGGGNGCAAACGTN-AGG 693 ** * * * * * * * * * * ** * * consensus_7485#0 CAACGCGTAATTGCATCACATCATTTT--AACGATGATCAGGCCCCATTTGGTTGCGTTT 886 consensus_7485#2 CAACGCGTAATTGCATCACATCATTGNTANACGATGATCAGGCCCATTATGGTTGCGTAC 551 consensus_7485#1 CNACAAAANATTAAAGCCCCAACCCAACATACNAAGAACCNGACATTGGTTTCAAGGNTT 753 * ** *** * * * ** * ** * * * * * consensus_7485#0 A-CTCGAT-TACTCTCCATTAGATTGGGCCAC-AATGGGAATAAATT-ATATAGAAGAAA 942 consensus_7485#2 AACTCGACATACTCTCCATNAGCATGGGCCACCAATGGGANTAAATTCATATNGAAGAAA 611 consensus_7485#1 TACAACAAAAAACCACCA-CAGTGGGGGGCGTTGTTGTTACCAACAC-ACANTCAACACC 811 * * * * *** ** *** * ** * ** * * ** * consensus_7485#0 AAGAAAAGAAAT-ACAATAACTGTAGCATAAACAATAGATCCATAAT---ACACACACAC 998 consensus_7485#2 AAGAAAAGAAAT-ACAATAACTGTAGCATAAACAATAGATCCATAAT---ACACANACAC 667 consensus_7485#1 TTNTTTTGATNTCACGGGAATTACCTTACCGCCTACCCTTTTATGAGCAAACATGACCAC 871 ** * ** ** * * * * * ** * *** *** consensus_7485#0 ACACTACCAG----TGAG-ATAGAGCGAAAGACCGTCGAGCGTCAGACA------GCCAC 1047 consensus_7485#2 ACACTACCAGG---TGAGCATANAGCGAANGACCG-CGAGCGTCAGACA------GCCAC 717 consensus_7485#1 GCNCCANCNAGGTACCAAAACGCNGCAACGGGTTTAAAAGTTCTGGGCCCGCTTTACCAC 931 * * * * * * ** * * ** * * **** consensus_7485#0 AGCAAC--AGCAGCAGAAACATGAAAATTTCAAATATCAAATTTTCTTAATAAAACATAT 1105 consensus_7485#2 AGCANA--G--------------------------------------------------- 724 consensus_7485#1 ACCACCTTGCCNATTCTTTTGCAAAGAACGGCAGCATTGNCAATTTCCCNANGGGCCCCC 991 * ** consensus_7485#0 TCTTTTGTGATATGT----------- 1120 consensus_7485#2 -------------------------- consensus_7485#1 CCCCATTTAGGGGGGTCTGACGGNTN 1017 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||