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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7486#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1071 fasta sequence
[CCGCGGACGCGTGGGCAAGTGAGTGCAAGCTGCGGGACCAGTGAGAGGAAGGAGCTGTTCGTACGTGTTCAGTCTGATTTACTCGATCAAATTTCAACCAAACTCTCGACCCTTTCTTAAGATAACTTGATCAATGCTTCCAAATCACAGAGCGTACAACAAGCACCGCTGATACGCGCCACTGATACGTCGACAATTCAGTTCGCAGACATCAGCAAATGGTTGAACGTAGTTACAGGGATAAAAGGGAAATGTATCACAATCAGATTATTAGATAAAGCAATTGATAAAATAGTTTAAACGCAATCTGCCCATAGGGGATAGCACTTAACACGACAACATAACACGATAACGTTAGGAAAGTGCACTAGTAGACGCATGGCATCTGCTGTAGTAAGTTGTATTTGTAGAGAAATAGCTGAATATCGTGTTACACATGTCGTACCAGAGGAATGTCTTAATTATGAGGTAAACCGACTACGAACATTCTTTCCGTTGTGGACAGTTCCTTACATCTACCCAGAGGAACTAGCTCGTTGGGGCTTTTTCTACACCGGGCACCGTGATTGTGTGCGCTGCTACTTTTGCCGCATCGAGCTTGGAGGATGGGACGAGCACGACGCCGTGATAGAGGAACACTTGAAATGGTCACCCCACTGCAGACTGATGACCAAACGGCCAACAAACAATGTGCCTATTGATCCAGATTTTCTCGATCAGTTAGGGGGAGATCGTGCCCGATACAACGGGCACAGGCAGCACGATTGCAAGAGAAATGGCAGCTACAGCAGCGGCGGCAGAATCGAATAGGCTCAATCGCCAGAACGAACTGGAAAGGCAGTCGCAAAGGACGCAAAATGATACGACGCCCTTCTATAGGCAGAAGTACCCGCAGTACCGAATAGAGGGCGATCGGTTAGCGACCTTTAAGGAGTGGCCCAAATCGATGCCACAAACACCCGAGCGGATGGCTGATGCGGGATTTTTCTACACCGGCAAGAGTGATGTGGTGGCGTGCTTTTACTGCGGTGGCAACCTGCGGGACTGGCTGGCCGAGGATGACCCGTGGGT]
[+] EMBL BM583867 [CCGCGGACGCGTGGGCAAGTGAGTGCAAGCTGCGGGACCAGTGAGAGGAAGGAGCTGTTCGTACGTGTTCAGTCTGATTTACTCGATCAAATTTCAACCAAACTCTCGACCCTTTCTTAAGATAACTTGATCAATGCTTCCAAATCACAGAGCGTACAACAAGCACCGCTGATACGCGCCACTGATACGTCGACAATTCAGTTCGCAGACATCAGCAAATGGTTGAACGTAGTTACAGGGATAAAAGGGAAATGTATCACAATCAGATTATTAGATAAAGCAATTGATAAAATAGTTTAAACGCAATCTGCCCATAGGGGATAGCACTTAACACGACAACATAACACGATAACGTTAGGAAAGTGCACTAGTAGACGCATGGCATCTGCTGTAGTAAGTTGTATTTGTAGAGAAATAGCTGAATATCGTGTTACACATGTCGTACCAGAGGAATGTCTTAATTATGAGGTAAACCGACTACGAACATTCTTTCCGTTGTGGACAGTTCCTTACATCTACCCAGAGGAACTAGCTCGTTGGGGCTTTTTCTACACCGGGCACCGTGATTGTGTGCGCTGCTACTTTTGCCGCATCGAGCTTGGAGGATGGGACGAGCACGACGCCGTGATAGAGGAACACTTGAAATGGTCACCCCACTGCAGACTGATGACCAAACGG ]
[+] EMBL BM629038 [CCGCCCACGCGT CCGAGTGAGTGCAAGCTGCGGGACCAGTGAGAGGAAGGAGCTGTTCGTACGTGTTCAGTCTGATTTACTCGATCAAATTTCAACCAAACTCTCGACCCTTTCTTAAGATAACTTGATCAATGCTTCCAAATCACAGAGCGTACAACAAGCACCGCTGATACGCGCCACTGATACGTCGACAATTCAGTTCGCAGACATCAGCAAATGGTTGAACGTAGTTACAGGGATAAAAGGGAAATGTATCACAATCAGATTATTAGATAAAGCAATTGATAAAATAGTTTAAACGCAATCTGCCCATAGGGGATAGCACTTAACACGACAACATAACACGATAACGTTAGGAAAGTGCACTAGTAGACGCATGGCATCTGCTGTAGTAAGTTGTATTTGTAGAGAAATAGCTGAATATCGTGTTACACATGTCGTACCAGAGGAATGTCTTAATTATGAGGTAAACCGACTACGAACATTCTTTCCGTTGTGGACAGTTCCTTACATCTACCCAGAGGAACTAGCTCGTTGGGGCTTTTTCTACACCGGGCACCGTGATTGTGTGCGCTGCTACTTTTGCCGCATCGAGCTTGGAGGATGGGACGAGCACGACGCCGTGATAGAGGAACACTTGAAATGGTCACCCCACTGCAGACTGATGACCAAACG ]
[+] EMBL BM645769 [ ccgGGGGATAGCACTTAACACGACAACATAACACGATAACGTTAGGAAAGTGCACTAGTAGACGCATGGCATCTGCTGTAGTAAGTTGTATTTGTAGAGAAATAGCTGAATATCGTGTTACACATGTCGTACCAGAGGAATGTCTTAATTATGAGGTAAACCGACTACGAACATTCTTTCCGTTGTGGACAGTTCCTTACATCTACCCAGAGGAACTAGCTCGTTGGGGCTTTTTCTACACCGGGCACCGTGATTGTGTGCGCTGCTACTTTTGCCGCATCGAGCTTGGAGGATGGGACGAGCACGACGCCGTGATAGAGGAACACTTGAAATGGTCACCCCACTGCAGACTGATGACCAAACGGCCAACAAACAATGTGCCTATTGATCCAGATTTTCTCGATCAGTTAGGGGGAGATCGTGCCCGATACAACGGGCACAGGCAGCACGATTGCAAGAGAAATGGCAGCTACAGCAGCGGCGGCAGAATCGAATAGGCTCAATCGCCAGAACGAACTGGAAAGGCAGTCGCAAAGGACGCAAAATGATACGACGCCCTTCTATAGGCAGAAGTACCCGCAGTACCGAATAGAGGGCGATCGGTTAGCGACCTTTAAGGAGTGGCCCAAATCGATGCCA ]
[+] EMBL BM625539 [ ccgGTAGTAAGTTGCATTTGTAGAGAAATAGCTGAATATCGTGTTACACATGTCGTACCAGAGGAATGTCTTAATTATGAGGTAAACCGACTACGAACATTCTTTCCGTTGTGGACAGTTCCTTACATCTACCCAGAGGAACTAGCTCGTTGGGGCTTCTTCTACACCGGGCACCGTGATTGTGTGCGCTGCTACTTTTGTCGGATCGAGCTTGGAGGATGGGACGAGCACGACGCCGTGATAGAGGAACACTTGAAATGGTCACCCCACTGCAGACTGATGACCAAACGGCCAACAAATAATGTGCCTATTGATCCAGATTTTCTCGATCAGTTA GGGGAGATCGTGCCCGATACAACGGGCACAAGCAGCACGATTGCAAGAGAAATGGCAGCAACAGCAGCGGCGGCAGAATCGAATAGGCTCAATCGCCAGAACGAACTGGAAAGGCAGTCGCAAAGGACGCAAAATGATACGACGCCCTTCTATAGGCAGAAGTACCCGCAGTACCGAATAGAGGGCGATCGGTTAGCGACCTTTAAGGAGTGGCCCAAATCGATGCCACAAACACCCGAGCGGATGGCTGATGCGGGATTTTTCTACACCGGCAAGAGTGATGTGGTGGCGTGCTTTTACTGCGGTGGCAACCTGCGGGACTGGCTGGCCGAGGATGACCCGTGGGT]
consensusID : consensus_7486#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 915 fasta sequence
[CCGGTGAGTGCAAGCTGCGGGACCAGTAAGAGGAACGAGCTGTTCGTACGTGTTCAGTCTGATTTACTCGATCAAATTTCAACCAATCTCTCGACCTCCTTTTAAGATAACTTGATCAATGCCGCCAAAGTGCAAATCACAGTCTTGATCGCAGAGCGTACAACATTAAACTGCATTGCTGATACGCGCCACTGATGGCGATAGCTGAGTTCGCAGATAGTAGCAAATGGTGGAACGTAGTTACAGAGATAAAAAGGAATTGGATTACAATCAGATTATTAGATAAAGCAATTGATAGAAAAGTTTTAACGCAATATTCGCGATTAACGCGATTAACACTTAGCAGGTTAACATAATAGGATAACGTTAGGAAAGTGCACAAGCAGACGCATGGCATCTGCTGTAGTGAGTTGCATTTGTAGAGAAATAGCTGAATATCGTGTTACACACGACACACCAGAGGAATGTCTTAACTATGAGGTAAACCGACTACGAACATTTCCGTTGTGGACAGTTCCTTACATCTACCCAGAGGAACTAGCTCGTTGGGGCTTCTTCTACACCGGGTACCGTGATTGTGTGCGCTGTTACTTTTGCCGCATCGAGCTTGGAGGATGGGACGAGCACGACGTCGTGATAGAGGAACACTTGAAATGGTCACCCCACTGCAGACTGATGACCAAACGGCAACAAACAATGTGCCTATTGATCCAGACTTTCTCGATCAGTTCAGGGAGATCGTGCCCGATACAACGGGCACAGGAAGCACGAGTGCCTGGTCTGCGGCAGCACAGCAGCGGTGGCGGTGGCGATGGAATCGAATAGGCTCAATCGCCAGAACGAACTGGNAAAGGCAGTCACAAAGGACGCAAAATGATACGATACCCTTCTATAGACAGAAGTACCGTGGGTGGA]
[+] EMBL BM634302 [CCGGTGAGTGCAAGCTGCGGGACCAGTAAGAGGAACGAGCTGTTCGTACGTGTTCAGTCTGATTTACTCGATCAAATTTCAACCAATCTCTCGACCTCCTTTTAAGATAACTTGATCAATGCCGCCAAAGTGCAAATCACAGTCTTGATCGCAGAGCGTACAACATTAAACTGCATTGCTGATACGCGCCACTGATGGCGATAGCTGAGTTCGCAGATAGTAGCAAATGGTGGAACGTAGTTACAGAGATAAAAAGGAATTGGATTACAATCAGATTATTAGATAAAGCAATTGATAGAAAAGTTTTAACGCAATATTCGCGATTAACGCGATTAACACTTAGCAGGTTAACATAATAGGATAACGTTAGGAAAGTGCACAAGCAGACGCATGGCATCTGCTGTAGTGAGTTGCATTTGTAGAGAAATAGCTGAATATCGTGTTACACACGACACACCAGAGGAATGTCTTAACTATGAGGTAAACCGACTACGAACATTTCCGTTGTGGACAGTTCCTTACATCTACCCAGAGGAACTAGCTCGTTGGGGCTTCTTCTACACCGGGTACCGTGATTGTGTGCGCTGTTACTTTTGCCGCATCGAGCTTGGAGGATGGGACGAGCACGACGTCGTGATAGAGGAACACTTGAAATGGTCACCCCACTGCAGACTGATGACCAAA ]
[+] EMBL AL693694 [ ccgaggctTTTACGCGATT ACACTTAGCAGGT ACATAATAGGATAACGTTAGGAAAGTGCACAAGCAGACGCATGGCATCTGCTGTAGTGAGTTGCATTTGTAGAGAAATAGCTGAATATCGTGTTACACACGACACACCAGAGGAATGTCTTAACTATGAGGTAAACCGACTACGAACATTTCCGTTGTGGACAGTTCCTTACATCTACCCAGAGGAACTAGCTCGTTGGGGCTTCTTTTACACCGGGTACCGTGATTGTGTGCGCTGTTACTTTTGCCGCATCGAGCTTGGAGGATGGGACGAGCACGACGTCGTGATAGAGGAACACTTGAAATGGTCACCCCAATGCAGACTGATGACCAAACGGCAACAAACAATGTGCCTATTGATCCAGACTTTCTCGATCAGTTCAGGGAGATCGTGCCCGATACAACGGGCACAGGAAGCACGAGTGCCTGGTCTGCGGCAGCACAGCAGCGGTGGCGGTGGCGATGGAATCGAATAGGCTCAATCGCCAGAACGAACTGGNAAAGGCAGTCACAAAGGACGCAAAATGATACGATACCCTTCTATAGACAGAAGTACCGTGGGTGGA]
consensusID : consensus_7486#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence
[CCGCCCACGCGTCCGAGCTCGTTGGGGCTTCTTCTACACCGGGTACCGTGATTGTGTGCGCTGTTACTTTTGCCGCATCGAGCTTGGAGGATGGGACGAGCACGACGTCGTGATAGAGGAACACTTGAAATGGTCACCCCACTGCAGACTGATGACCAAACGGCCAACAAACAATGTGCCTATTGATCCAGACTTTCTCGATCAGTTAGGGGGGAGATCGTGCCCGATACAACGGGCACAGGAAGCACGAGTGCAAGGTCCGCGGCAGCAACAACAGCGGTGGCGGTGGCGGTGGAATCGAATAGGCTCAATCGCCAGAACGAACTGGAAAGGCAGTCACAAAGGACGCAAAATGATACGATACCCTTCTATAGACAGAAGTACCCGGAGTACCGAATAGGGGGCGATCGGCTAGCGACCTTTAAGGAGTGGCCCAAATCAATACCACAAACACCCACGCAGATGGCTGATGCGGGATTTTTCTACACCGGCAAGAAGTGATGGTGGTGGCGTGCTTTTACTGCGGTGGCAATCTGCGGGACTGGCTGGGCCGAGGATGACCCGTGGGTGGAGCATGTGAGGAACTTTAGCGAATGCCCGTACGTGAAACTAGTGAAGACGCCCGAGTTCATTGCGGAATGCCGGGGGAG]
[+] EMBL BM590978 [CCGCCCACGCGTCCGAGCTCGTTGGGGCTTCTTCTACACCGGGTACCGTGATTGTGTGCGCTGTTACTTTTGCCGCATCGAGCTTGGAGGATGGGACGAGCACGACGTCGTGATAGAGGAACACTTGAAATGGTCACCCCACTGCAGACTGATGACCAAACGGCCAACAAACAATGTGCCTATTGATCCAGACTTTCTCGATCAGTTAGGGGGGAGATCGTGCCCGATACAACGGGCACAGGAAGCACGAGTGCAAGGTCCGCGGCAGCAACAACAGCGGTGGCGGTGGCGGTGGAATCGAATAGGCTCAATCGCCAGAACGAACTGGAAAGGCAGTCACAAAGGACGCAAAATGATACGATACCCTTCTATAGACAGAAGTACCCGGAGTACCGAATAGGGGGCGATCGGCTAGCGACCTTTAAGGAGTGGCCCAAATCAATACCACAAACACCCACGCAGATGGCTGATGCGGGATTTTTCTACACCGGCAAGAAGTGATGGTGGTGGCGTGCTTTTACTGCGGTGGCAATCTGCGGGACTGGCTGGGCCGAGGATGACCCGTGGGTGGAGCATGTGAGGAACTTTAGCGAATGCCCGTACGTGAAACTAGTGAAGACGCCCGAGTTCATTGCGGAATGCCGGGGGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7486#0 CCGCGGACGCGTGGGCAAGTGAGTGCAAGCTGCGGGACCAGTGAGAGGAAGGAGCTGTTC 60
consensus_7486#1 ---------------CCGGTGAGTGCAAGCTGCGGGACCAGTAAGAGGAACGAGCTGTTC 45
consensus_7486#2 ------------------------------------------------------------
consensus_7486#0 GTACGTGTTCAGTCTGATTTACTCGATCAAATTTCAACCAAACTCTCGACCCTTTCTTAA 120
consensus_7486#1 GTACGTGTTCAGTCTGATTTACTCGATCAAATTTCAACCAATCTCTCGACCTCCTTTTAA 105
consensus_7486#2 ------------------------------------------------------------
consensus_7486#0 GATAACTTGATCAATGCTTCCAAA-------------------TCACAGAGCGTACAACA 161
consensus_7486#1 GATAACTTGATCAATGCCGCCAAAGTGCAAATCACAGTCTTGATCGCAGAGCGTACAACA 165
consensus_7486#2 ------------------------------------------------------------
consensus_7486#0 A------GCACCGCTGATACGCGCCACTGATACGTCGACAATTCAGTTCGCAGACATCAG 215
consensus_7486#1 TTAAACTGCATTGCTGATACGCGCCACTGAT--GGCGATAGCTGAGTTCGCAGATAGTAG 223
consensus_7486#2 ------------------------------------------------------------
consensus_7486#0 CAAATGGTTGAACGTAGTTACAGGGATAAAAGGGAAATGTATCACAATCAGATTATTAGA 275
consensus_7486#1 CAAATGGTGGAACGTAGTTACAGAGATAAAAAGGAATTGGATTACAATCAGATTATTAGA 283
consensus_7486#2 ------------------------------------------------------------
consensus_7486#0 TAAAGCAATTGATAAAATAGTTTAAACGCAATCTGCCC----ATAGGGGATAGCACTTAA 331
consensus_7486#1 TAAAGCAATTGATAGAAAAGTTTTAACGCAATATTCGCGATTAACGCGATTAACACTTAG 343
consensus_7486#2 ------------------------------------------------------------
consensus_7486#0 CACGACAACATAACACGATAACGTTAGGAAAGTGCACTAGTAGACGCATGGCATCTGCTG 391
consensus_7486#1 CAGGTTAACATAATAGGATAACGTTAGGAAAGTGCACAAGCAGACGCATGGCATCTGCTG 403
consensus_7486#2 ------------------------------------------------------------
consensus_7486#0 TAGTAAGTTGTATTTGTAGAGAAATAGCTGAATATCGTGTTACACATGTCGTACCAGAGG 451
consensus_7486#1 TAGTGAGTTGCATTTGTAGAGAAATAGCTGAATATCGTGTTACACACGACACACCAGAGG 463
consensus_7486#2 ------------------------------------------------------------
consensus_7486#0 AATGTCTTAATTATGAGGTAAACCGACTACGAACATTCTTTCCGTTGTGGACAGTTCCTT 511
consensus_7486#1 AATGTCTTAACTATGAGGTAAACCGACTACGAACATT---TCCGTTGTGGACAGTTCCTT 520
consensus_7486#2 ------------------------------------------------------------
consensus_7486#0 ACATCTACCCAGAGGAACTAGCTCGTTGGGGCTTTTTCTACACCGGGCACCGTGATTGTG 571
consensus_7486#1 ACATCTACCCAGAGGAACTAGCTCGTTGGGGCTTCTTCTACACCGGGTACCGTGATTGTG 580
consensus_7486#2 ----CCGCCCACGCGTCCGAGCTCGTTGGGGCTTCTTCTACACCGGGTACCGTGATTGTG 56
* **** * * *************** ************ ************
consensus_7486#0 TGCGCTGCTACTTTTGCCGCATCGAGCTTGGAGGATGGGACGAGCACGACGCCGTGATAG 631
consensus_7486#1 TGCGCTGTTACTTTTGCCGCATCGAGCTTGGAGGATGGGACGAGCACGACGTCGTGATAG 640
consensus_7486#2 TGCGCTGTTACTTTTGCCGCATCGAGCTTGGAGGATGGGACGAGCACGACGTCGTGATAG 116
******* ******************************************* ********
consensus_7486#0 AGGAACACTTGAAATGGTCACCCCACTGCAGACTGATGACCAAACGGCCAACAAACAATG 691
consensus_7486#1 AGGAACACTTGAAATGGTCACCCCACTGCAGACTGATGACCAAACGGC-AACAAACAATG 699
consensus_7486#2 AGGAACACTTGAAATGGTCACCCCACTGCAGACTGATGACCAAACGGCCAACAAACAATG 176
************************************************ ***********
consensus_7486#0 TGCCTATTGATCCAGATTTTCTCGATCAGTTAGGGGG-AGATCGTGCCCGATACAACGGG 750
consensus_7486#1 TGCCTATTGATCCAGACTTTCTCGATCAGTTCAGGG--AGATCGTGCCCGATACAACGGG 757
consensus_7486#2 TGCCTATTGATCCAGACTTTCTCGATCAGTTAGGGGGGAGATCGTGCCCGATACAACGGG 236
**************** ************** *** **********************
consensus_7486#0 CACAGGCAGCACGATTGCAAGA--------GAAA-TGGCAGCTACAGCAGCGGCGGCAGA 801
consensus_7486#1 CACAGGAAGCACGAGTGCCTGGTCTGCGGCAGCA-CAGCAGCGGTGGCGGTGGCGATGGA 816
consensus_7486#2 CACAGGAAGCACGAGTGCAAGGTCCGCGGCAGCAACAACAGCGGTGGCGGTGGCGGTGGA 296
****** ******* *** * * **** ** * **** **
consensus_7486#0 ATCGAATAGGCTCAATCGCCAGAACGAACTGGAAA-GGCAGTCGCAAAGGACGCAAAATG 860
consensus_7486#1 ATCGAATAGGCTCAATCGCCAGAACGAACTGGNAAAGGCAGTCACAAAGGACGCAAAATG 876
consensus_7486#2 ATCGAATAGGCTCAATCGCCAGAACGAACTGGAAA-GGCAGTCACAAAGGACGCAAAATG 355
******************************** ** ******* ****************
consensus_7486#0 ATACGACGCCCTTCTATAGGCAGAAGTACCCGCAGTACCGAATAGAGGGCGATCGGTTAG 920
consensus_7486#1 ATACGATACCCTTCTATAGACAGAAGTACCGTGGGTGGA--------------------- 915
consensus_7486#2 ATACGATACCCTTCTATAGACAGAAGTACCCGGAGTACCGAATAGGGGGCGATCGGCTAG 415
****** *********** ********** **
consensus_7486#0 CGACCTTTAAGGAGTGGCCCAAATCGATGCCACAAACACCCGAGCGGATGGCTGATGCGG 980
consensus_7486#1 ------------------------------------------------------------
consensus_7486#2 CGACCTTTAAGGAGTGGCCCAAATCAATACCACAAACACCCACGCAGATGGCTGATGCGG 475
consensus_7486#0 GATTTTTCTACACCGGCAAGAGTGATGTGGTGGCGTGCTTTTACTGCGGTGGCAACCTGC 1040
consensus_7486#1 ------------------------------------------------------------
consensus_7486#2 GATTTTTCTACACCGGCAAGAAGTGATGGTGGTGGCGTGCTTTTACTGCGGTGGCAATCT 535
consensus_7486#0 GGGACTGGCTGGCCGAGGATGACCCGTGGGT----------------------------- 1071
consensus_7486#1 ------------------------------------------------------------
consensus_7486#2 GCGGGACTGGCTGGGCCGAGGATGACCCGTGGGTGGAGCATGTGAGGAACTTTAGCGAAT 595
consensus_7486#0 -------------------------------------------------------
consensus_7486#1 -------------------------------------------------------
consensus_7486#2 GCCCGTACGTGAAACTAGTGAAGACGCCCGAGTTCATTGCGGAATGCCGGGGGAG 650
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||