These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1683 fasta sequence [TAATTGCTTCCCTTCTATGTGTTTGTGAGTGAGTGTGTAGAATAGTCGTGTGATACAGAGCTCAAAATTTCAAACTTCATTTTTCAACCCCTTTTAGTTTTGTTTAGCACTTTGTCGGTTTGTTTTTCCTTTTTGTTGCTTCTTCGCTTTCCCACAACCCGCTTCTTAAACTCTGAACAGTGATTTAAAAACAAAACGTAGAACAAAAATCAGATTGGCACATATAAGTAAGGGTTTCTTCCTCTTCTTCTTCTGTCGCTCAGAAAGCTTTCTCCCGCGGGTGATTAGTGAAACGGTGCCCTTCTTTTCTAATGATCAATTTTCAGCTCCTTATGATCGTGTGTAAACTGTACAAGATACAACCTAAACCG---C-CTCTCTCTGTCTCTATTTTCGCACGCTCTCGCTCACTCTCTCTCTCTCTCTCACTCGCGCTACTCAGTCAACATGCACTCTCTTTGTTGTTCTAATCCTAATTTCGAATTCTAACAGCTTCGCCGTTTGTCAATTGTTAAGCGGATATACGCCATGGGGCGGATAAAAGGGAAAGGGAAGGAAGAACAGGGGGAAGCTCAGTACGTTCAATGGTTAACACAACTATTTAAAAAAAACACGGTGGTAAATGGTCGCCGCCAGAGGGGACACACCGGAGAGGGGCAGCATCAGCGCATGGTGTGTGGTCGAAACACAGCGGCGGACACGCGAAAAACGCGCGCGATGGCACACAGACCTGGATATTCTCCTTCCTTCTCTCTCTCTCTGTATTGCTTCAAATTGACACACCTGGCAGATGATCCTGCTGTAGTAGTGGGTAGTAGTAGTGGGGGGCTTGTACTGTTGAGATCATATGCTGTTGATGCGCTGCCGCCGCCGTCGTTGTTGCTGCTGCTGCTGGGCGTTCCCTTCCTCGCCGTTTTCTCCCGACACACCACCTCCTTGTGAGCGCTCCCCTCCTCTGCTTACTTGTAGTACATCGGCTCGGATTTGCTCAGATCCGTCGGCATCATGCTGTCGTCGTCGCTTTTCACGTGCATGCTGTGGTGATGCTGCTGCGA------CTGGTGCGCGGACGACTCACTGTTGGCGGGCGAGGGCGTATCACGGTCGCGATCGTGCGGTTCCCGGTGGTCGTGGTCGCTCGCACCGCTCGTGCTGCTGCTTCGGCTACCGTTCCGTGCCGGGTGGTGGTGGTGTTGGTGCTGGTGATGCGACGACGACGACGACGACGACTGGTGGTGAAGGGGATGGTCCTGCTGCTGCTCCGCGGCGTCCTGCTGGTGGCGGGCTTCGGCCGCTGCCGCAATCGCTGCCGCAGCCGCTGCCTGCGCCTGAAGCTGCTGCTGGTGCAGATGGTGCAGGTTGCTGCTGATCGTGTGCAGCGACTGCGAGTTGATCGACAGGGGCGTTGGCGAGGACGGAGGCGAACCAGCTTCCGACTGT---TGCTGCTGCTGCTGCTGCTGCCTCAGCAGTTGAATCGTTGTCAGTCCGTTGGCATTGCGAATCAGTGGGTAGCAGTCCGTTCCGTTGACGGGCGATCCGTAGCTAAACTTGCGATCGTTCGTGCTGAGATCGGTCGGCTTGAGGTCGTCCAGGTCGGTTTCCATCTTGATGTTGCGCTGGTGCGGCCCGCCGCCCGCTCCCCCGGCGCGGCCATTTTGTACTGCGAGATGGTGCGAATGGATAGCGGCG] [+] EMBL BM596134 [TAATTGCTTCCCTTCTATGTGTTTGTGAGTGAGTGTGTAGAATAGTCGTGTGATACAGAGCTCAAAATTTCAAACTTCATTTTTCAACCCCTTTTAGTTTTGTTTAGCACTTTGTCGGTTTGTTTTTCCTTTTTGTTGCTTCTTCGCTTTCCCACAACCCGCTTCTTAAACTCTGAACAGTGATTTAAAAACAAAACGTAGAACAAAAATCAGATTGGCACATATAAGTAAGGGTTTCTTCCTCTTCTTCTTCTGTCGCTCAGAAAGCTTTCTCCCGCGGGTGATTAGTGAAACGGTGCCCTTCTTTTCTAATGATCAATTTTCAGCTCCTTATGATCGTGTGTAAACTGTACAAGATACAACCTAAACCGTCTCTCTCTCTCTGTCTCTATTTTCGCACGCTCTCGCTCACTCTCTCTCTCTCTCTCACTCGCGCTACTCAGTCAACATGCACTCTCTTTGTTGTTCTAATCCTAATTTCGAATTCTAACAGCTTCGCCGTTTGTCAATTGTTAAGCGGATATACGCCATGGGGCGGATAAAAGGGAAAGGGA ] [+] EMBL AGA282229 [ TCTAATGATCAATTTTCAGCTCCTTACGATCGTGTGTAAACTGTACAAGATACAACCTAAACCG C CTCTCTCTGTCTCTCTTTTCGCACGCTCTCGCTCACTCTCTCTGTCTCTCTCACTCGCGCTACTCAGTCAACATGCACTCTCTTTGTTGTTCTAATCCTAATTTCGAATTCTAACAGCTTCGCCGTTTGTCAATTGTTAAGCGGATATACGCCATGGGGCGGATAAAAGGGAAAGGGTAGGAAGAACAGGGGGAAGCTCAGTACGTTCAATGGTTAACACAACTATTTAAAAAAAACACGGTGGTAAATGGTCGCCGCCAGAGGGGACACACCGGAGAGGGGCAGCATCAGCGCATGGTGTGTGGTCGAAACACAGCGGCGGACACGCGAAAAAC ] [-] EMBL BM586563 [ ATCAGCGCATGGTGTGTGGTCGAAACACAGCGGCGGACACACGAAAAACGCGCGCGATGGCACACAGACCTGGATATTCTCCTTCCTTCTCTCTCTCTCTGTATTGCTTCAAATTGACACACCTGGCAGATGATCCTGCTGTAGTAGTGGGTAGTAGTAGTGGGGGGCTTGTACTGTTGAGATCATATGCTGTTGATGCGCTGCCGCCGCCGTCGTTGTTGCTGCTGCTGCTGGGCGTTCCCTTCCTCGCCGTTTTCTCCCGACACACCACCTCCTTGTGAGCGCTCCCCTCCTCTGCTTACTTGTAGTACATCGGCTCGGATTTGCTCAGATCCGTCGGCATCATGCTGTCGTCGTCGCTTTTCACGTGCATGCTGTGGTGATGCTGCTGCGACTGCTGCTGGTGCGCGGACGACTCACTGTTGGCGGGCGAGGGCGTATCACGGTCGCGATCGTGCGGTTCCCGGTGGTCGTGGTCGCTCGCACCGCTCGTGCTACTGCTTCGGCTACCGTTCCGTGCCGGGTGGTGGTGGTGTTGGTGCTGGTGATG CGACGACGACGACGACGACTGGTGGTGAAGGGGATGGTCCTGCTGCTGCTCCGCGGCGTCCTGCTGGTGGCGGGCTTCGGCCGCTGCCGCAATCGCTGCCGCAGCCGCTGCCgg ] [-] EMBL AL932920 [ TTGTGAGCGCTCCCCTCCTCTGCTTACTTGTAGTACATCGGCTCGGATTTGCTCAGATCCGTCGGCATCATGCTGTCGTCGTCGCTTTTCACGTGCATGCTGTGGTGATGCTGCTGCGA CTGGTGCGCGGACGACTCACTGTTGGCGGGCGAGGGCGTATCACGGTCGCGATCGTGCGGTTCCCGGTGGTCGTGGTCGCTCGCACCGCTCGTGCTGCTGCTTCGGCTACCGTTCCGTGCCGGGTGGTGGTGGTGTTGGTGCTGGTGATGCGACGACGACGACGACGACGACTGGTGGTGAAGGGGATGGTCCTGCTGCTGCTCCGCGGCGTCCTGCTGGTGGCGGGCTTC GCCGCTNCCGCAATCGCTGCCCCAGCCGCTGCCTGCGCCTGAAGCTGCTGCTGGTGCAGATGGTGCAGTTTGCTGCTGATCGTGTGCAGCGACTGCGAG TGATCGACA GGGCGTGGGCGA GAC GA GCG ACCAGCTTCCGACTGT NNCTGg ] [-] EMBL BM627898 [ GCTCAGATCCGTCGGCATCATGCTGTCGTCGTCGCTTTTCACGTGCATGCTGTGGTGATGCTGCTGCGA CTGGTGCGCGGACGACTCACTGTTGGCGGGCGAGGGCGTATCACGGTCGCGATCGTGCGGTTCCCGGTGGTCGTGGTCGCTCGCACCGCTCGTGCTGCTGCTTCGGCTACCGTTCCGTGCCGGGTGGTGGTGGTGTTGGTGCTGGTGATGCGACGACGACGACGACGACGACTGGTGGTGAAGGGGATGGTCCTGCTGCTGCTCCGCGGCGTCCTGCTGGTGGCGGGCTTCGGCCGCTGCCGCAATCGCTGCCGCAGCCGCTGCCTGCGCCTGAAGCTGCTGCTGGTGCAGATGGTGCAGGTTGCTGCTGATCGTGTGCAGCGACTGCGAGTTGATCGACAGGGGCGTTGGCGAGGACGGAGGCGAACCAGCTTCCGACTGTTGCTGCTGCTGCTGCTGCTGCTGCCTCAGCAGTTGAATCGTTGTCAGTCCGTTGGCATTGCGAATCAGTGGGTAGCAGTCCGTTCCGTTGACGGGCGATCCGTAGCTAAACTTGCGATCGTTCGTGCTGAGATCGGTCGGCTTGAGGTCGTCCAGGTCGGTTTCCATCTTGATGTTGCGCTGGTGCGGCCCGCCGCCCGCTCCCCCGGCGCGG ] [-] EMBL AGA280527 [ GGGCTTCGCCCGCTGCCGCAATCGCTGCCGCAGCCGCTGCCTGCGCCTGAAGCTGCTGCTGGTGCAGATGGTGCAGGTTGCTGCTGATCGTGTGCAGCGACTGCGAGTTGATCGACAGGGGCGTTGGCGAGGACGGAGGCGAACCAGCTTCCGACTGT TGCTGCTGCTGCTGCTGCTGCCTCAGCAGTTGAATCGTTGTCAGTCCGTTGGCATTGCGAATCAGTGGGTAGCAGTCCGTTCCGTTGACGGGCGATCCGTAGCTAAACTTGCGATCGTTCGTGCTGAGATCGGTCGGCTTGAGGTCGTCCAGGTCGGTTTCCATCTTGATGTTGCGCTGGTGCGGCCCGCCGCCCGCTCCCCCGGCGGCCCCATTTTGTACTGCGAGATGGTGCGAATGGATAGCGGCG] consensusID : consensus_7494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence [ATCTGTACAAAGGTGAGTTGTGTGTGTGTGTGTGTGCCAATGGTGCATGAGTGTGCATGTGTGCGCGTATGTGTGTGTGTGCTCCCTAATAATTGGGGAAGGGGGAGGGAGAAAACACAAAAGGTGCTCTTTTTAAAAACGAGTATATAAAAAAAAAAACAAACAAACATCGAGTTCAATATACAGGAGTTAATCACTAGTTTGTTTTATATGCATAATTGCTTCCCTTCTATGTGTTTGTGAGTGAGTGTGTAGAATAGTCGTGTGATACAGAGCTCTAAAATTTCAAACTTCATTTTTCAACCCCTTTTAGTTTTGTTTAGCACTTTGTCGGTTTGTTTTTCCTTTTTGTTGCTTCTTCGCTTTCCCACAACCCGCTTCTTAAACTCTGAACAGTGATTTAAAAACAAAACGTAGAACAAAAATCAGATTGGCACATATAAGTAAGGGTTTCTTCCTCTTCTTCTTCTTCTTCTTCTGTCGCTCAGAAAGCTTTCTCCCGCGGGTGATTAGTGACACGGTGCCCTTCTTTTCTAATGATCAATTTTCAGCTCCTTATGATCGTGTGTAAACTGTACAAGATACAACCTAAACCGTCTCTCTCTCTGTCTCTCTTTTCGCACGCTCTCGCTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCGCGCTACTCAGTCAACATGCAC] [-] EMBL BM632131 [ATCTGTACAAAGGTGAGTTGTGTGTGTGTGTGTGTGCCAATGGTGCATGAGTGTGCATGTGTGCGCGTATGTGTGTGTGTGCTCCCTAATAATTGGGGAAGGGGGAGGGAGAAAACACAAAAGGTGCTCTTTTTAAAAACGAGTATATAAAAAAAAAAACAAACAAACATCGAGTTCAATATACAGGAGTTAATCACTAGTTTGTTTTATATGCATAATTGCTTCCCTTCTATGTGTTTGTGAGTGAGTGTGTAGAATAGTCGTGTGATACAGAGCTCTAAAATTTCAAACTTCATTTTTCAACCCCTTTTAGTTTTGTTTAGCACTTTGTCGGTTTGTTTTTCCTTTTTGTTGCTTCTTCGCTTTCCCACAACCCGCTTCTTAAACTCTGAACAGTGATTTAAAAACAAAACGTAGAACAAAAATCAGATTGGCACATATAAGTAAGGGTTTCTTCCTCTTCTTCTTCTTCTTCTTCTGTCGCTCAGAAAGCTTTCTCCCGCGGGTGATTAGTGACACGGTGCCCTTCTTTTCTAATGATCAATTTTCAGCTCCTTATGATCGTGTGTAAACTGTACAAGATACAACCTAAACCGTCTCTCTCTCTGTCTCTCTTTTCGCACGCTCTCGCTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCGCGCTACTCAGTCAACATGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7494#0 ------------------------------------------------------------ consensus_7494#1 ATCTGTACAAAGGTGAGTTGTGTGTGTGTGTGTGTGCCAATGGTGCATGAGTGTGCATGT 60 consensus_7494#0 ------------------------------------------------------------ consensus_7494#1 GTGCGCGTATGTGTGTGTGTGCTCCCTAATAATTGGGGAAGGGGGAGGGAGAAAACACAA 120 consensus_7494#0 ------------------------------------------------------------ consensus_7494#1 AAGGTGCTCTTTTTAAAAACGAGTATATAAAAAAAAAAACAAACAAACATCGAGTTCAAT 180 consensus_7494#0 -----------------------------------TAATTGCTTCCCTTCTATGTGTTTG 25 consensus_7494#1 ATACAGGAGTTAATCACTAGTTTGTTTTATATGCATAATTGCTTCCCTTCTATGTGTTTG 240 ************************* consensus_7494#0 TGAGTGAGTGTGTAGAATAGTCGTGTGATACAGAGCTC-AAAATTTCAAACTTCATTTTT 84 consensus_7494#1 TGAGTGAGTGTGTAGAATAGTCGTGTGATACAGAGCTCTAAAATTTCAAACTTCATTTTT 300 ************************************** ********************* consensus_7494#0 CAACCCCTTTTAGTTTTGTTTAGCACTTTGTCGGTTTGTTTTTCCTTTTTGTTGCTTCTT 144 consensus_7494#1 CAACCCCTTTTAGTTTTGTTTAGCACTTTGTCGGTTTGTTTTTCCTTTTTGTTGCTTCTT 360 ************************************************************ consensus_7494#0 CGCTTTCCCACAACCCGCTTCTTAAACTCTGAACAGTGATTTAAAAACAAAACGTAGAAC 204 consensus_7494#1 CGCTTTCCCACAACCCGCTTCTTAAACTCTGAACAGTGATTTAAAAACAAAACGTAGAAC 420 ************************************************************ consensus_7494#0 AAAAATCAGATTGGCACATATAAGTAAGGGTTTCTTCCTCTTCTTCTTCT---------G 255 consensus_7494#1 AAAAATCAGATTGGCACATATAAGTAAGGGTTTCTTCCTCTTCTTCTTCTTCTTCTTCTG 480 ************************************************** * consensus_7494#0 TCGCTCAGAAAGCTTTCTCCCGCGGGTGATTAGTGAAACGGTGCCCTTCTTTTCTAATGA 315 consensus_7494#1 TCGCTCAGAAAGCTTTCTCCCGCGGGTGATTAGTGACACGGTGCCCTTCTTTTCTAATGA 540 ************************************ *********************** consensus_7494#0 TCAATTTTCAGCTCCTTATGATCGTGTGTAAACTGTACAAGATACAACCTAAACCGCCTC 375 consensus_7494#1 TCAATTTTCAGCTCCTTATGATCGTGTGTAAACTGTACAAGATACAACCTAAACCGTCTC 600 ******************************************************** *** consensus_7494#0 TCTCT--GTCTCTATTTTCGCACGCTCTCGCTCACTCTCTCTCTCTCTCTCACTCGCGCT 433 consensus_7494#1 TCTCTCTGTCTCTCTTTTCGCACGCTCTCGCTCACTCTCTCTCTCTCTCTCTCTCTCTCT 660 ***** ****** ************************************* *** * ** consensus_7494#0 ACTCAGTCAACATGCACTCTCTTTGTTGTTCTAATCC-TAATTTCGAATTCTAACAGCTT 492 consensus_7494#1 -CTCTCTC-----TCTCTCTCTCACTCGCGCTACTCAGTCAACATGCAC----------- 703 *** ** * ****** * * *** ** * * * * consensus_7494#0 CGCCGTTTGTCAATTGTTAAGCGGATATACGCCATGGGGCGGATAAAAGGGAAAGGGAAG 552 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 GAAGAACAGGGGGAAGCTCAGTACGTTCAATGGTTAACACAACTATTTAAAAAAAACACG 612 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 GTGGTAAATGGTCGCCGCCAGAGGGGACACACCGGAGAGGGGCAGCATCAGCGCATGGTG 672 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 TGTGGTCGAAACACAGCGGCGGACACGCGAAAAACGCGCGCGATGGCACACAGACCTGGA 732 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 TATTCTCCTTCCTTCTCTCTCTCTCTGTATTGCTTCAAATTGACACACCTGGCAGATGAT 792 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 CCTGCTGTAGTAGTGGGTAGTAGTAGTGGGGGGCTTGTACTGTTGAGATCATATGCTGTT 852 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 GATGCGCTGCCGCCGCCGTCGTTGTTGCTGCTGCTGCTGGGCGTTCCCTTCCTCGCCGTT 912 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 TTCTCCCGACACACCACCTCCTTGTGAGCGCTCCCCTCCTCTGCTTACTTGTAGTACATC 972 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 GGCTCGGATTTGCTCAGATCCGTCGGCATCATGCTGTCGTCGTCGCTTTTCACGTGCATG 1032 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 CTGTGGTGATGCTGCTGCGACTGGTGCGCGGACGACTCACTGTTGGCGGGCGAGGGCGTA 1092 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 TCACGGTCGCGATCGTGCGGTTCCCGGTGGTCGTGGTCGCTCGCACCGCTCGTGCTGCTG 1152 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 CTTCGGCTACCGTTCCGTGCCGGGTGGTGGTGGTGTTGGTGCTGGTGATGCGACGACGAC 1212 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 GACGACGACGACTGGTGGTGAAGGGGATGGTCCTGCTGCTGCTCCGCGGCGTCCTGCTGG 1272 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 TGGCGGGCTTCGGCCGCTGCCGCAATCGCTGCCGCAGCCGCTGCCTGCGCCTGAAGCTGC 1332 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 TGCTGGTGCAGATGGTGCAGGTTGCTGCTGATCGTGTGCAGCGACTGCGAGTTGATCGAC 1392 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 AGGGGCGTTGGCGAGGACGGAGGCGAACCAGCTTCCGACTGTTGCTGCTGCTGCTGCTGC 1452 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 TGCCTCAGCAGTTGAATCGTTGTCAGTCCGTTGGCATTGCGAATCAGTGGGTAGCAGTCC 1512 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 GTTCCGTTGACGGGCGATCCGTAGCTAAACTTGCGATCGTTCGTGCTGAGATCGGTCGGC 1572 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 TTGAGGTCGTCCAGGTCGGTTTCCATCTTGATGTTGCGCTGGTGCGGCCCGCCGCCCGCT 1632 consensus_7494#1 ------------------------------------------------------------ consensus_7494#0 CCCCCGGCGCGGCCATTTTGTACTGCGAGATGGTGCGAATGGATAGCGGCG 1683 consensus_7494#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||