These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7500#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1708 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGCGGTACAGTGTTTACACATCGGTCTCCACCCCGTTCCGTGTCGTGTTTTGCTGTCCAGACAAAAAACAACGTGCCCAACGGAGTGTGTAACGGTGCTCGGAGTCGAAAAACGGGCAACGGCTTATTGTTTCCACTGCTTGATTCACCGGGAAGCAGTCGGTCAAGTGGATCCAGGGCGGGTGTAATTATTCGCAAGACACTCGCACAAACGGTGTGTTGTTGTAACCCCTTCCCCGTGGGGTGTGTGTGTGTGTTTGACCCCTGTCAGTCAAGTGAAATAATTGTGAATAATTTAACATTTGCTGTTTTCTTTTTGTTCTGACGGTACATTATCGGTAGAATTAAAGTCGAATCGGTTTGCACTGGTGTGAGTGAGAAGTGAATTTTGAGCTCGAAACGATCAAACGATCTGCCCAACATCATGACGTCCACCGGAGAGAAAGACACATCAGCGGTGGAAATAAACATCGAAGAGAGCGCCGGCAGCGACATGCCAGATGCTGGCCGCACCACTGCCAACCCAGCGCACACCCTTGCCGCACGCCCCAACGGTCGCAATCGTAGCCGGTCGAACAGTCGTCCGCCAATGGCTGGGCCCGAGCTGGACGATGACGACGACGACGAGCTGGACGATGGGGGTGGATCTGGACGATCCCAAGAGCAACCGGGGCATCGACAGTGGCTTCCTCGATCCGGTCGACAATGGGTCCGTTGATACGGGTGTGTCGCGGGCGGGACGACGCGGAGGTCGTCGCAATCAGGCACCTCCCGGGCCAACGTATCGCCCAGGGTTTGCACCGACATTCGATGCCGATGGGACACGTGTTGTTCAAACGACGGCCACCGGGCAGGTCATACCGGACGTGAATGTGTACCAGCAGAAGAAGAACCTTGCGCAGGGCATGATGGATCTGGCGCTACTGTCCGCCAACGCCAATCAGCTCCGGTACGTGCTGGAGTCGTACAGCCGCCATCCGTACTTCTACGTCAATCTGGTGTTCATCTCGACCAGCATCATTGCGCAGGTGGCGGTCGGCATTGGGCTGATCTGGAAGAGCCGGTACGACATCAAGAAGGAGAACGATTTTTGTAAAGCCGATCGGATCAACAATCTCATCACGATCGGCATCTTCATCATTACGCTCGTGAACGTGCTGATATCGGCGTTTGGTGTTGCCGAGACGCAGCCGGTCGTGTGACGGCACTGTGCTGTTACTGTGCTGTGTAATTTAAACTATGTTGTCAGTATCATCTAGAGTAGCATTTAGGTTAGGATGTGATAGGAGCAAATAGTGGAGTTTCGACGACTTCAAATCCAAATAACTTAACCATGGTCCATAGATTGTTTTAATCCAAAATAAATGATGTATTTTATGAACCTTTTTAGTGAAGAGCTACTACTGTAAATTGATTATCAGTAGTGTTACTAACGATAAGCATTTTCGTGAACACTACCACAAAAACAAAAAGAAATTAACACTCCTAATATATCATTCATACACTGCGTGTGTTCGTTGACCTTACAGTTCGTGTTTGCACCCACAACAAACCACTGCGGGCGTTTCAGATGTAAAGAGAGAAGAACAATTGATCAAACAGCTGTATAAACAATAAAGTTAAAAATGATCAAAACATTCCTCAGTA] [+] EMBL BM656851 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGCGGTACAGTGTTTACACATCGGTCTCCACCCCGTTCCGTGTCGTGTTTTGCTGTCCAGACAAAAAACAACGTGCCCAACGGAGTGTGTAACGGTGCTCGGAGTCGAAAAACGGGCAACGGCTTATTGTTTCCACTGCTTGATTCACCGGGAAGCAGTCGGTCAAGTGGATCCAGGGCGGGTGTAATTATTCGCAAGACACTCGCACAAACGGTGTGTTGTTGTAACCCCTTCCCCGTGGGGTGTGTGTGTGTGTTTGACCCCTGTCAGTCAAGTGAAATAATTGTGAATAATTTAACATTTGCTGTTTTCTTTTTGTTCTGACGGTACATTATCGGTAGAATTAAAGTCGAATCGGTTTGCACTG GTGAGTGAGAAGTGAATTTTGAGCTCGAAACGATCAAACGATCTGCCCAACATCATGACGTCCACCGGAGAGAAAGACACATCAGCGGTGGAAATAAACATC AAGAGAGCGCCGGCAGCGACATGCCAGATGCTGGCCGCACCACTGCCAACCCAGCGCACACCCTTGCCGCACGCCCCAACGGTCGCAATCGTAGCCGGTCGAACAGTCGT ] [+] EMBL BM599246 [ CCGCCCACGCGTCCGGCGGTACAGTGTTTACACATCGGTCTCCACCCCGTTCCGTGTCGTGTTTTGCTGTCCAGACAAAAAACAACGTGCCCAACGGAGTGTGTAACGGTGCTCGGAGTCGAAAAACGGGCAACGGCTTATTGTTTCCACTGCTTGATTCACCGGGAAGCAGTCGGTCAAGTGGATCCAGGGCGGGTGTAATTATTCGCAAGACACTCGCACAAACGGTGTGTTGTTGTAACCCCTTCCCCGTGGGGTGTGTGTGTGTGTTTGACCCCTGTCAGTCAAGTGAAATAATTGTGAATAATTTAACATTTGCTGTTTTCTTTTTGTTCTGACGGTACATTATCGGTAGAATTAAAGTCGAATCGGTTTGCACTGGTGTGAGTGAGAAGTGAATTTTGAGCTCGAAACGATCAAACGATCTGCCCAACATCATGACGTCCACCGGAGAGAAAGACACATCAGCGGTGGAAATAAACATCGAAGAGAGCGCCGGCAGCGACATGCCAGATGCTGGCCGCACCACTGCCAACCCAGCGCA ] [+] EMBL BM625091 [ CCGGCGGTACAGTGTTTACACATCGGTCTCCACCCCGTTCCGTGTCGTGTTTTGCTGTCCAGACAAAAAACAACGTGCCCAACGGAGTGTGTAACGGTGCTCGGAGTCGAAAAACGGGCAACGGCTTATTGTTTCCACTGCTTGATTCACCGGGAAGCAGTCGGTCAAGTGGATCCAGGGCGGGTGTAATTATTCGCAAGACACTCGCACAAACGGTGTGTTGTTGTAACCCCTTCCCCGTGGGGTGTGTGTGTGTGTTTGACCCCTGTCAGTCAAGTGAAATAATTGTGAATAATTTAACATTTGCTGTTTTCTTTTTGTTCTGACGGTACATTATCGGTAGAATTAAAGTCGAATCGGTTTGCACTGGTGTGAGTGAGAAGTGAATTTTGAGCTCGAAACGATCAAACGATCTGCCCAACATCATGACGTCCACCGGAGAGAAAGACACATCAGCGGTGGAAATAAACATCGAAGAGAGCGCCGGCAGCGACATGCCAGATGCTGGCCGCACCACTGCCAACCCAGCGCACACCCTTGCCGCACGCCCCAACGGTCGCAATCGTAGCCGGTCGAACAGTGAACCGCCAATGGCTGGGCCCGAGCTGGACGATGACGACGACGACGAGCTGGACGATGGGGGTGGATCTGGACGATCCCAAGAGCAACCGGGGCAT ] [+] EMBL BX618652 [ GCTGGGCCCGAGCTGGACGAT GACGACGACGAGCTGGACGAT GGGGTGGATCTGGACGACCCCAAGAGCAACCGGGGCATCGACAGTGGCTTCCTCGATCCGGTCGACAATGGGTCCGTTGATACGGGTGTGTCGCGGGCGGGACGACGCGGAGGTCGTCGCAATCAGGCACCTCCCGGGCCAACGTATCGCCCAGGGTTTGCACCGACATTCGATGCCGATGGGACACGTGTTGTTCAAACGACGGCCACCGGGCAGGTCATACCGGACGTGAATGTGTACCAGCAGAAGAAGAACCTTGCGCAGGGCATGATGGATCTGGCGCTACTGTCCGCCAACGCCAATCAGCTCCGGTACGTGCTGGAGTCGTACAGCCGCCATCCGTACTTCTACGTCAATCTGGTGTTCATCTCGACCAGCATCATTGCGCAGGTGGCGGTCGGCATTGGGCTGATCTGGAAGAGCCGGTACGACATCAAGAAGGAGAACGATTTTTGTAAAGCCGATCGGATCAACAATCTCATCACGATCGGCATCTTCATCATTACGCTCGTGAACGTGCTGATATCGGCGTTTGGTG ] [-] EMBL BM632372 [ AAGCCGATCGGATCAACAATCTCATCACGATCGGCATCTTTATCATTACGCTCGTGAACGTGCTAATATCGGCGTTTGGTGTTGCCGAGACGCAGCCGGTCGTGTGACGGCACTGTGCTGTTACTGTGCTGTGTAATTTAAACTATGTTGTCAGTATCATCTAGAGTAGCATTTAGGTTAGGATGTGATAGGAGCAAATAGTGGAGTTTCGACGACTTCAAATCCAAATAACTTAACCATGGTCCATAGATTGTTTTAATCCAAAATAAATGATGTATTTTATGAACCTTTTTAGTGAAGAGCTACTACTGTAAATTGATTATCAGTAGTGTTACTAACGATAAGCATTTTCGTGAACACTACCACAAAAACAAAAAGAAATTAACACTCCTAATATATCATTCATACACTGCGTGTGTTCGTTGACCTTACAGTTCGTGTTTGCACCCACAACAAACCACTGCGGGCGTTTCAGATGTAAAGAGAGAAGAACAATTGATCAAACAGCTGTATAAACAATAAAGTTAAAAATGATCAAAACATTCCTCAGTA] consensusID : consensus_7500#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 693 fasta sequence [CCGGTCGAGCCGCTCAGCGGTACAGTGTTTACACATCGGTCTCCACCCCGTTCCGTGTCGTGTTTTGCTGTCCAGACAAAAAACAACGTGCCCAACGGAGTGTGTAACGGTGCTCGGAGTCGAAAAACGGGCAACGGCTTATTGTTTCCACTGCTTGATTCACCGGGAAGCAGTCGGTCAAGTGGATCCAGGGCGGGTGTAATTATTCGCAAGACACTCGCACAAACGGTGTGTTGTTGTAACCCCTTCCCCGTGGGGTGTGTGTGTGTGTTTGACCCCTGTCAGTCAAGTGAAATAATTGTGAATAATTTAACATTTGCTGTTTTCTTTTTGTTCTGACGGTACATTATCGGTAGAATTAAAGTCGAATCGGTTTGCACTGGTGTGAGTGAGAAGTGAATTTTGAGCTCGAAACGATCAAACGATCTGCCCAACATCATGACGTCCACCGGAGAGAAAGACACATCAGCGGTGGAAATAAACATCGAAGAGAGCGCCGGCAGCGACATGCCAGATGCTGGCCGCACCACTGCCAACCCAGCGCACACCCTTGCCGCACGCCCCAACGGTCGCAATCGTAGCCGGTCGAACAGTCGTTCACCATCTCGCCGAGCAAAGCGTGGACACAGAGAAGGCTCGTACCGATGCGATTCCCCTTCTGCCCATACCTAACGAATCGAATCTTCCTCGGCA] [+] EMBL BM607915 [CCGGTCGAGCCGCTCAGCGGTACAGTGTTTACACATCGGTCTCCACCCCGTTCCGTGTCGTGTTTTGCTGTCCAGACAAAAAACAACGTGCCCAACGGAGTGTGTAACGGTGCTCGGAGTCGAAAAACGGGCAACGGCTTATTGTTTCCACTGCTTGATTCACCGGGAAGCAGTCGGTCAAGTGGATCCAGGGCGGGTGTAATTATTCGCAAGACACTCGCACAAACGGTGTGTTGTTGTAACCCCTTCCCCGTGGGGTGTGTGTGTGTGTTTGACCCCTGTCAGTCAAGTGAAATAATTGTGAATAATTTAACATTTGCTGTTTTCTTTTTGTTCTGACGGTACATTATCGGTAGAATTAAAGTCGAATCGGTTTGCACTGGTGTGAGTGAGAAGTGAATTTTGAGCTCGAAACGATCAAACGATCTGCCCAACATCATGACGTCCACCGGAGAGAAAGACACATCAGCGGTGGAAATAAACATCGAAGAGAGCGCCGGCAGCGACATGCCAGATGCTGGCCGCACCACTGCCAACCCAGCGCACACCCTTGCCGCACGCCCCAACGGTCGCAATCGTAGCCGGTCGAACAGTCGTTCACCATCTCGCCGAGCAAAGCGTGGACACAGAGAAGGCTCGTACCGATGCGATTCCCCTTCTGCCCATACCTAACGAATCGAATCTTCCT ] [+] EMBL BM599333 [ CCGCCCCGTTCCGTGTCGTGTTTTGCTGTCCAGACAAAAAACAACGTGCCCAACGGAGTGTGTAACGGTGCTC GAGTCGAAAAACGGGCAACGGCTTATTGTTTCGACTGCTTGATTCACCGGGAAGCAGTCGGTCAAGTGGATCCAGGGCGGGTGTAATTATTCGCAAGACACTGGCACAAACGGTGTGTTGTTGGAACCCCTTCCCCGTGGGGTGTGTG TGACCCCTGTCAGTCAAGTGAAATAATTGTGAATAATTTAACATTTGCTGTTTTATTTTTGTTGTGACGGTACATTATCGGTAGCATTAAAGTCGAATCAGTTTGCACTGGTGTGAGTGAGAAGTGAATTTTGAGCTCGAAACGAACAAGTGTTCTGCCCAACATCATGACGTCCACCGGAGAGAAAGACACATCAGCGGTGGAAATAAACATCGAAGAGAGCGTCGGCAGCGACATGCCAGATGCTGGCCGCGCCACTGCCAACCCAGCGCACGCCCTTACCGCACGCCCCAACGGTCGCAATCGTAGCCGGTCGAACAGTCGTTCACCATCTCGCCGAGCAAAGCGTGGACACAGAGAAGGCTCGTACCGATGCGATTCCCCTTCTGCCCATACCTAACGAATCGAATCTTCCTCGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7500#0 CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGT 60 consensus_7500#1 -----------------------------------------------CCGGTCGAGCCGC 13 * * * * ** consensus_7500#0 CCGGCGGTACAGTGTTTACACATCGGTCTCCACCCCGTTCCGTGTCGTGTTTTGCTGTCC 120 consensus_7500#1 TCAGCGGTACAGTGTTTACACATCGGTCTCCACCCCGTTCCGTGTCGTGTTTTGCTGTCC 73 * ********************************************************* consensus_7500#0 AGACAAAAAACAACGTGCCCAACGGAGTGTGTAACGGTGCTCGGAGTCGAAAAACGGGCA 180 consensus_7500#1 AGACAAAAAACAACGTGCCCAACGGAGTGTGTAACGGTGCTCGGAGTCGAAAAACGGGCA 133 ************************************************************ consensus_7500#0 ACGGCTTATTGTTTCCACTGCTTGATTCACCGGGAAGCAGTCGGTCAAGTGGATCCAGGG 240 consensus_7500#1 ACGGCTTATTGTTTCCACTGCTTGATTCACCGGGAAGCAGTCGGTCAAGTGGATCCAGGG 193 ************************************************************ consensus_7500#0 CGGGTGTAATTATTCGCAAGACACTCGCACAAACGGTGTGTTGTTGTAACCCCTTCCCCG 300 consensus_7500#1 CGGGTGTAATTATTCGCAAGACACTCGCACAAACGGTGTGTTGTTGTAACCCCTTCCCCG 253 ************************************************************ consensus_7500#0 TGGGGTGTGTGTGTGTGTTTGACCCCTGTCAGTCAAGTGAAATAATTGTGAATAATTTAA 360 consensus_7500#1 TGGGGTGTGTGTGTGTGTTTGACCCCTGTCAGTCAAGTGAAATAATTGTGAATAATTTAA 313 ************************************************************ consensus_7500#0 CATTTGCTGTTTTCTTTTTGTTCTGACGGTACATTATCGGTAGAATTAAAGTCGAATCGG 420 consensus_7500#1 CATTTGCTGTTTTCTTTTTGTTCTGACGGTACATTATCGGTAGAATTAAAGTCGAATCGG 373 ************************************************************ consensus_7500#0 TTTGCACTGGTGTGAGTGAGAAGTGAATTTTGAGCTCGAAACGATCAAACGATCTGCCCA 480 consensus_7500#1 TTTGCACTGGTGTGAGTGAGAAGTGAATTTTGAGCTCGAAACGATCAAACGATCTGCCCA 433 ************************************************************ consensus_7500#0 ACATCATGACGTCCACCGGAGAGAAAGACACATCAGCGGTGGAAATAAACATCGAAGAGA 540 consensus_7500#1 ACATCATGACGTCCACCGGAGAGAAAGACACATCAGCGGTGGAAATAAACATCGAAGAGA 493 ************************************************************ consensus_7500#0 GCGCCGGCAGCGACATGCCAGATGCTGGCCGCACCACTGCCAACCCAGCGCACACCCTTG 600 consensus_7500#1 GCGCCGGCAGCGACATGCCAGATGCTGGCCGCACCACTGCCAACCCAGCGCACACCCTTG 553 ************************************************************ consensus_7500#0 CCGCACGCCCCAACGGTCGCAATCGTAGCCGGTCGAACAGTCGTCCGCCAATGGCTGGGC 660 consensus_7500#1 CCGCACGCCCCAACGGTCGCAATCGTAGCCGGTCGAACAGTCGTTCACCA---TCTCG-- 608 ******************************************** * *** ** * consensus_7500#0 CCGAGCTGGACGATGACGACGACGACGAGCTGGACGATGGGGGTGGATCTG-GACGATCC 719 consensus_7500#1 CCGAGCAAAGCGTGGACACAGAGAAGGCTCGTACCGATGCGATTCCCCTTCTGCCCATAC 668 ****** ** *** ** * * * ***** * * * * * ** * consensus_7500#0 CAAGAGCAACCGGGGCATCGACAGTGGCTTCCTCGATCCGGTCGACAATGGGTCCGTTGA 779 consensus_7500#1 CTAACG-AATCGAATCTTCCTCGGCA---------------------------------- 693 * * * ** ** * ** * * consensus_7500#0 TACGGGTGTGTCGCGGGCGGGACGACGCGGAGGTCGTCGCAATCAGGCACCTCCCGGGCC 839 consensus_7500#1 ------------------------------------------------------------ consensus_7500#0 AACGTATCGCCCAGGGTTTGCACCGACATTCGATGCCGATGGGACACGTGTTGTTCAAAC 899 consensus_7500#1 ------------------------------------------------------------ consensus_7500#0 GACGGCCACCGGGCAGGTCATACCGGACGTGAATGTGTACCAGCAGAAGAAGAACCTTGC 959 consensus_7500#1 ------------------------------------------------------------ consensus_7500#0 GCAGGGCATGATGGATCTGGCGCTACTGTCCGCCAACGCCAATCAGCTCCGGTACGTGCT 1019 consensus_7500#1 ------------------------------------------------------------ consensus_7500#0 GGAGTCGTACAGCCGCCATCCGTACTTCTACGTCAATCTGGTGTTCATCTCGACCAGCAT 1079 consensus_7500#1 ------------------------------------------------------------ consensus_7500#0 CATTGCGCAGGTGGCGGTCGGCATTGGGCTGATCTGGAAGAGCCGGTACGACATCAAGAA 1139 consensus_7500#1 ------------------------------------------------------------ consensus_7500#0 GGAGAACGATTTTTGTAAAGCCGATCGGATCAACAATCTCATCACGATCGGCATCTTCAT 1199 consensus_7500#1 ------------------------------------------------------------ consensus_7500#0 CATTACGCTCGTGAACGTGCTGATATCGGCGTTTGGTGTTGCCGAGACGCAGCCGGTCGT 1259 consensus_7500#1 ------------------------------------------------------------ consensus_7500#0 GTGACGGCACTGTGCTGTTACTGTGCTGTGTAATTTAAACTATGTTGTCAGTATCATCTA 1319 consensus_7500#1 ------------------------------------------------------------ consensus_7500#0 GAGTAGCATTTAGGTTAGGATGTGATAGGAGCAAATAGTGGAGTTTCGACGACTTCAAAT 1379 consensus_7500#1 ------------------------------------------------------------ consensus_7500#0 CCAAATAACTTAACCATGGTCCATAGATTGTTTTAATCCAAAATAAATGATGTATTTTAT 1439 consensus_7500#1 ------------------------------------------------------------ consensus_7500#0 GAACCTTTTTAGTGAAGAGCTACTACTGTAAATTGATTATCAGTAGTGTTACTAACGATA 1499 consensus_7500#1 ------------------------------------------------------------ consensus_7500#0 AGCATTTTCGTGAACACTACCACAAAAACAAAAAGAAATTAACACTCCTAATATATCATT 1559 consensus_7500#1 ------------------------------------------------------------ consensus_7500#0 CATACACTGCGTGTGTTCGTTGACCTTACAGTTCGTGTTTGCACCCACAACAAACCACTG 1619 consensus_7500#1 ------------------------------------------------------------ consensus_7500#0 CGGGCGTTTCAGATGTAAAGAGAGAAGAACAATTGATCAAACAGCTGTATAAACAATAAA 1679 consensus_7500#1 ------------------------------------------------------------ consensus_7500#0 GTTAAAAATGATCAAAACATTCCTCAGTA 1708 consensus_7500#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||