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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1280 fasta sequence
[GAGGCAAGAATCGGCACGATGGAGTCACTGTGTCCGTATGTGTGTGTGTGTGTGTCTCTGGTTTGTATCTCAACTAGAAGTGTATTAAGTTTTTCTCCTTGCAGTAGAAGAACATTGCGTTGCTCGAGCAGCCAATTGAATACAAGCATTTAAATAATATAGAGCAG-CCTAGGAAGAACGAGGGAAGTTTAGGTAAGCACAAGACGACCACTGCATGGAAATGGATGCCAAAAACAAATGAAGAATT-GAATT-TGAATGGATCGTACAAGGAAGGGCAGAAGCGGATAGGAA-ACACGA-AATATAGTTAAATGAGAAA-AGAATTGGCGAATTTGAGATTGAAAAAAACGAAGAAATGCGTAGCGAGGACTAGAAAGGTTAGTTTCGGTT-TTCCATTATTACTACGCGATATTT-GTCAGTAGCAACTGTAGCT-AAATGTGAACTTTAT-TACGTGTTGCAACCAACAACGTTCGTGCAACGCATGT-TT-TAA-AAAG-GT-TCATCGTGTGTACATTTCGATTGACATTTTTAAAAACAAAACAATTCGAGTCATCTCCTACAGCTTTTA-AAAAGGCT-AATTTGAGTCTCAGTTTGCATAATACACACTGCATACATATCTGTATAAACATAACTGTTTCTTCAAAACGGCAAAATGCTCGGTAATCACAGCTCAATTAAGCGAAGCCGTTACAAACGATGATCGATGATCGGTATGATGTATTTTCGAAGATTAATTAATTATTGCGTTGGAAAATGGGTTGAAATTAGTAAGCTCTACGTAAAACGAATGAAAAGAGAATTGTTCATAATTGAACAGCGGGAAAGAGAAAATAAGAGACATGGAGTAATGGACTACCGGAGGAGTAATCAAATGATCTTTTGACGGATTAGAATAGACTGTGGAAGGTC-ACC-AAAAGGTAAAGTGATATCAAAT-ACACTTAGATAGCGAAATCAAGCCTGAAAGGGAGAGAGTGAGGTAGAGAGAAAAGAAAAAGTAGTGAGAGTAAGAAAATGTTTCGATGTAATACTCCAGCACGGATGACATTATTCAATCTACCATGATTAACATTCTCCCTGGGCTGTTTGTTCTTCAACACCTATCTGTGCGCTAGTTTGCAGCAAGTTAAGGTGTGGTGATTAGCAAATAGAGTAGAGAGAGCATTTGGGAAAGCATTGGAGAGAAGGAAAACCCCCCCTGTAACCATGGTTGGTGCGCGTGCGGTGTGGTGATGCACGCTCATCGTAAAGACATGTAGAATTTGTGTTACTATTTTCACGTCCTGAAG]
[+] EMBL BX469860 [GAGGCAAGAATCGGCACGATGGAGTCACTGTGTCCGTATGTGTGTGTGTGTGTGTCTCTGGTTTGTATCTCAACTAGAAGTGTATTAAGTTTTTCTCCTTGCAGTAGAAGAACATTGCGTTGCTCGAGCAGCCAATTGAATACAAGCATTTAAATAATATAGAGCAG CCTAGGAAGAACGAGGGAAGTTTAGGTAAGCACAAGACGACCACTGCATGGAAATGGATGCCAAAAACAAATGAAGAATT GAATT TGAATGGATCGTACAAGGAAGGGCAGAAGCGGATAGGAA ACACGA AATATAGTTAAATGAGAAA AGAATTGGCGAATTTGAGATTGAAAAAAACGAAGAAATGCGTAGCGAGGACTAGAAAGGTTAGTTTCGGTT TTCCATTATTACTACGCGATATTT GTCAGTAGCAACTGTAGCT AAATGTGAACTTTAT TACGTGTTGCAACCAACAACGTTCGTGCAACGCATGT TT TAA AAAG GT TCATCGTGTGTACATTTCGATTGACATTTTTAAAAACAAAACAATTCGAGTCATCTCCTACAGCTTTTANAAAGGGCTAAATTTGAGTCTCAGTTTGCATAATACACACTGCATACNTATCTGTAT ]
[+] EMBL BX619401 [ gcatnnaAAATAATATAGAGCAGACCTAGGAAGAACGAGGGAAGTTTAGGTAAGCACAAGACGACCACTGCATGGAAATGGATGCCAAAAACAAATGAAGAATTNGAATTCTGAATGGATCGTACAAGGAAGGGCAGAAGCGGATAGGAAGACACGATAATATAGTTAAATGAGAAATAGAATTGGCGAATTTGAGATTGAAAAAAACGAAGAAATGCGTAGCGAGGACTAAAAAGGTTAGTTTCGGTTNNTCCATTATTACTACGCGATATTTNGTCAGTAGCAACTGTAGCTAAAATGTGAACTCTATATACGTGTGGCAACCAACAACGTACGTGCAACGCATGTGTT TAANAAAGCGTNTCATCG ]
[+] EMBL BX621240 [ TATAGAGCAG CCTAGGAAGAACGAGGGAAGTTTAGGTAAGCACAAGACGACCACTGCATGGAAATGGATGCCAAAAACAAATGAAGAATT GAATT TGAATGGATCGTACAAGGAAGGGCAGAAGCGGATAGGAA ACACGA AATATAGTTAAATGAGAAA AGAATTGGCGAATTTGAGATTGAAAAAAACGAAGAAATGCGTAGCGAGGACTAGAAAGGTTAGTTTCGGTT TTCCATTATTACTACGCGATATTT GTCAGTAGCAACTGTAGCT AAATGTGAACTTTAT TACGTGTTGCAACCAACAACGTTCGTGCAACGCATGT TT TAA AAAG GT TCATCGTGTGTACATTTCGATTGACATTTTTAAAAACAAAACAATTCGAGTCATCTCCTACAGCTTTTA AAAAGGCT AATTTGAGTCTCAGTTTGCATAATACACACTGCATACATATCTGTATAAACATAACTGTTTCTTCAAAACGGCAAAATGCTCGGTAATCACAGCTCAATTAAGCGAAGCCGTTACAAACGATGATCGATGATCGGTATGATGTATTTTCGAAGATTAATTAATTATTGCGTTGGAAAATGGGTTGAAATTAGTAAGCTCTACGTAAAACGAATGAAAAGAGAATTGTTCATAATTGAACAGCGGGAAAGAGAAAATAAGAGACATGGAGTAATGGACTACCGGAGGAGTAATCAAATGATCTTTTGACGGATTAGAATA ]
[+] EMBL BX617756 [ GAGGGAAGTTTAGGTAAGCACAAGACGACCACTGCATGGAAATGGATGCCAAAAACAAATGAAGAATT GAATT TGAATGGATCGTACAAGGAAGGGCAGAAGCGGATAGGAA ACACGA AATATAGTTAAATGAGAAA AGAATTGGTGAATTTGAGATTG AAAAATCGAAGCAAT GTAGCGAAGACAAGAAAGGTTAGTTTCGGTT TTCCATTATTACTACGCGATATTT GTCAGTAGCAACTGTAGCT AAATGTGAACTTTAT TACGTGTTGCAACCAACAACGTTCGTGCAACGCATGT TT TAA AAAG GT TCATCGTGTGTACATTTCGATTGACATTTTTAAAAACAAAACAATTCGAGTCATCTCCTACAGCTTTTA AAAAGGCT AATTTGAGTCTCAGTTTGCATAATACACACTGCATACATATCTGTATAAACAAAAATGTTTCTTCATGACGGCAAAATGCTCGGTAATCACAGCTCAATTAAGCGAAGCCGTTACAAACGATGATCGATGATCGGTTTGATGTATTTTCGAAGATTAATTAATTATTGCGTTGGAAAATGGGTTGAAATTAGTAAGCTCTACGTAAAACGAATGAAAAGAGAATTGTTCATAATTGAACAGCGGGAAAGAGAAAATAAGAGACATGGAGTAATGGACTACCGGAGGAGTATTC AATGATCTTTTGACGGATTAGAATAGACTGTGGAAGGTC ACC AAAAGGTAAAGTGATATCAAAT ACACTTAGATAGCGAAATCAAGCCTGAAAGGGAGAGAGTGAGG ]
[+] EMBL BX626521 [ TGT TTCCNA AAAG GT TCATCGTGTGTACATTTCGATTGACATTTTTAAAAACAAAACAATTCGAGTCATCTCCTACAGCTTTTA AAAAGGCT AATTTGAGTCTCAGTTTGCATAATACACACTGCATACATATCTGTATAAACATAACTGTTTCTTCAAAACGGCAAAATGCTCGGTAATCACAGCTCAATTAAGCGAAGCCGTTACAAACGATGATCGATGATCGGTATGATGTATTTTCGAAGATTAATTAATTATTGCGTTGGAAAATGGGTTGAAATTAGTAAGCTCTACGTAAAACGAATGAAAAGAGAATTGTTCATAATTGAACAGCGGGAAAGAGAAAATAAGAGACATGGAGTAATGGACTACCGGAGGAGTAATCAAATGATCTTTTGACGGATTAGAATAGA ]
[+] EMBL BX617195 [ CGTAAAACGAATGAAAAGAGAATTGTTCATAATTGAACAGCGGGAAAGAGAAAATAAGAGACATGGAGTAATGGACTACCGGAGGAGTATTCAAATGATCTTTTGACGGATTAGAATAGACTGTGGAAGGTCAACCAAAAAGGTAAAGTGATATCAAATCACACTTAGATAGCGAAATCAGGCGTGAGAGGGAGAGAGTGAGGTAGAGAGAAAAGAAAAAGTAGTGAGAGTAAGAAAATGTTTCGATGTAATACTCCAGCACGGATGACATTATTCAATCTACCATGATTAACATTCTCCCTGGGCTGTTTGTTCTTCAACACCTATCTGTGCGCTAGTTTGCAGCAAGTTAAGGTGTGGTGATTAGCAAATAGAGTAGAGAGAGCATTTGGGAAAGCATTGGAGAGAAGGAAAACCCCCCCTGTAACCATGGTTGGTGCGCGTGCGGTGTGGTGATGCACGCTCATCGTAAAGACATGTAGAATTTGTGTTACTATTTTCACGTCCTGAAG]
consensusID : consensus_7501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence
[TCTCGATGTATTTTCAAAGATTAATTAATTTTTGCATTGGAAAATGGGTTGAAATTAGTAAGCTCGGCGAAAACGAGTGAAAAGAGAATTATTCATAATTGAAAAGCGGGAAAGAGAAAATAAGATACATGGAGTAATGGACTACGGGAGAAGTAATCAAATGATCTTTTGACGGATTAGAATAGACTGTGGAAGGTCAAACAAAAAGGTAAAGTGATATCAAATCACACTTAGATAGTGCAATCGGGCGTG]
[+] EMBL BM620480 [TCTCGATGTATTTTCAAAGATTAATTAATTTTTGCATTGGAAAATGGGTTGAAATTAGTAAGCTCGGCGAAAACGAGTGAAAAGAGAATTATTCATAATTGAAAAGCGGGAAAGAGAAAATAAGATACATGGAGTAATGGACTACGGGAGAAGTAATCAAATGATCTTTTGACGGATTAGAATAGACTGTGGAAGGTCAAACAAAAAGGTAAAGTGATATCAAATCACACTTAGATAGTGCAATCGGGCGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7501#0 GAGGCAAGAATCGGCACGATGGAGTCACTGTGTCCGTATGTGTGTGTGTGTGTGTCTCTG 60
consensus_7501#1 ------------------------------------------------------------
consensus_7501#0 GTTTGTATCTCAACTAGAAGTGTATTAAGTTTTTCTCCTTGCAGTAGAAGAACATTGCGT 120
consensus_7501#1 ------------------------------------------------------------
consensus_7501#0 TGCTCGAGCAGCCAATTGAATACAAGCATTTAAATAATATAGAGCAGCCTAGGAAGAACG 180
consensus_7501#1 ------------------------------------------------------------
consensus_7501#0 AGGGAAGTTTAGGTAAGCACAAGACGACCACTGCATGGAAATGGATGCCAAAAACAAATG 240
consensus_7501#1 ------------------------------------------------------------
consensus_7501#0 AAGAATTGAATTTGAATGGATCGTACAAGGAAGGGCAGAAGCGGATAGGAAACACGAAAT 300
consensus_7501#1 ------------------------------------------------------------
consensus_7501#0 ATAGTTAAATGAGAAAAGAATTGGCGAATTTGAGATTGAAAAAAACGAAGAAATGCGTAG 360
consensus_7501#1 ------------------------------------------------------------
consensus_7501#0 CGAGGACTAGAAAGGTTAGTTTCGGTTTTCCATTATTACTACGCGATATTTGTCAGTAGC 420
consensus_7501#1 ------------------------------------------------------------
consensus_7501#0 AACTGTAGCTAAATGTGAACTTTATTACGTGTTGCAACCAACAACGTTCGTGCAACGCAT 480
consensus_7501#1 ------------------------------------------------------------
consensus_7501#0 GTTTTAAAAAGGTTCATCGTGTGTACATTTCGATTGACATTTTTAAAAACAAAACAATTC 540
consensus_7501#1 ------------------------------------------------------------
consensus_7501#0 GAGTCATCTCCTACAGCTTTTAAAAAGGCTAATTTGAGTCTCAGTTTGCATAATACACAC 600
consensus_7501#1 ------------------------------------------------------------
consensus_7501#0 TGCATACATATCTGTATAAACATAACTGTTTCTTCAAAACGGCAAAATGCTCGGTAATCA 660
consensus_7501#1 ------------------------------------------------------------
consensus_7501#0 CAGCTCAATTAAGCGAAGCCGTTACAAACGATGATCGATGATCGGTATGATGTATTTTCG 720
consensus_7501#1 --------------------------------------------TCTCGATGTATTTTCA 16
***********
consensus_7501#0 AAGATTAATTAATTATTGCGTTGGAAAATGGGTTGAAATTAGTAAGCTCTACGTAAAACG 780
consensus_7501#1 AAGATTAATTAATTTTTGCATTGGAAAATGGGTTGAAATTAGTAAGCTCGGCG-AAAACG 75
************** **** ***************************** ** ******
consensus_7501#0 AATGAAAAGAGAATTGTTCATAATTGAACAGCGGGAAAGAGAAAATAAGAGACATGGAGT 840
consensus_7501#1 AGTGAAAAGAGAATTATTCATAATTGAAAAGCGGGAAAGAGAAAATAAGATACATGGAGT 135
* ************* ************ ********************* *********
consensus_7501#0 AATGGACTACCGGAGGAGTAATCAAATGATCTTTTGACGGATTAGAATAGACTGTGGAAG 900
consensus_7501#1 AATGGACTACGGGAGAAGTAATCAAATGATCTTTTGACGGATTAGAATAGACTGTGGAAG 195
********** **** ********************************************
consensus_7501#0 GTCA--CCAAAAGGTAAAGTGATATCAAAT-ACACTTAGATAGCGAAATCAAGCCTGAAA 957
consensus_7501#1 GTCAAACAAAAAGGTAAAGTGATATCAAATCACACTTAGATAGTGCAATCGGGCGTG--- 252
**** * ********************** ************ * **** ** **
consensus_7501#0 GGGAGAGAGTGAGGTAGAGAGAAAAGAAAAAGTAGTGAGAGTAAGAAAATGTTTCGATGT 1017
consensus_7501#1 ------------------------------------------------------------
consensus_7501#0 AATACTCCAGCACGGATGACATTATTCAATCTACCATGATTAACATTCTCCCTGGGCTGT 1077
consensus_7501#1 ------------------------------------------------------------
consensus_7501#0 TTGTTCTTCAACACCTATCTGTGCGCTAGTTTGCAGCAAGTTAAGGTGTGGTGATTAGCA 1137
consensus_7501#1 ------------------------------------------------------------
consensus_7501#0 AATAGAGTAGAGAGAGCATTTGGGAAAGCATTGGAGAGAAGGAAAACCCCCCCTGTAACC 1197
consensus_7501#1 ------------------------------------------------------------
consensus_7501#0 ATGGTTGGTGCGCGTGCGGTGTGGTGATGCACGCTCATCGTAAAGACATGTAGAATTTGT 1257
consensus_7501#1 ------------------------------------------------------------
consensus_7501#0 GTTACTATTTTCACGTCCTGAAG 1280
consensus_7501#1 -----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||