These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7504#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 957 fasta sequence [CCGTAATCACAGTTTTATGCTTTTTGCTGCTGTTTCTGTTTGCAATAATCCAAGTTTTTACAAATATTTCGGAATGTATAGAAAAATCTACTGCTAGCAGCTAGCAACACCTGCGCGCACAGTGCTGATTCGAAAACGGTACCAGCTCACACTGAATTTTGACTGCTCCTTCCCTGCCGCAGCCCTTCCGTCCTCTATCCCTTGAGTCTTGCTTTGTTCGACAAAGCAGGGTGAAAGATCATCGACAAATCGTCAAAAGTTTTACGGAAAAAATACTCCAAGCG-CCCAAGTA-TACGTGTGAAAAAGCGTGGAAAGCTTAAAATATCAACCTCAGATTGCTGCATTCGGTGATAAATTAGGTAGTTCCAACGTGCTTAACTCAGTGTTGGAAGACAATCGTAATCCACAGCCAACCAAAGCCAGTGTGCGTGTGTGCCATTTGAAAAGTCACTTTCACTTTGTTTGACCGAGAAAGTGTGCTCCGGAACGTTTGTACGGGGTGTGACACAACGAAAAGCAGCAGCTTCTTTAAAAAACCCTCCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATTCAGGAGCTGAATTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTT-GGTCCCG-CTCGTGCCATTATCGCTCCGCACGCCGGATATCGCTATTGCGGTGCCTGCGGTGCTTGGGCTTATCGGCAAATTAGTCCCGCCGTGGTAAAACGTGTGTTCATTTTGGGCCCTTCGCATCATGTGCGTCTGTCCCGTTGCGCCCTATCGGTGTTCAGTACTGCAATACAGCCCTTGTATNACCTGAAAGTGGATCAGCAAATCAACAACAGTGGGAAAGTACCGGCATTTCAAGTGGCATGGACCAAAAGACGGACGAAGACGAGCATAGCATCGAAATGCATCTTCCCTA] [+] EMBL BM577775 [CCGTAATCACAGTTTTATGCTTTTTGCTGCTGTTTCTGTTTGCAATAATCCAAGTTTTTACAAATATTTCGGAATGTATAGAAAAATCTACTGCTAGCAGCTAGCAACACTTGCGCGCACAGTGCTGATTCGAAAACGGTACCAGCTCACACTGAATTTTGACTGCTCCTTCCCTGCCGCAGCCCTTCCGTCCTCTATCCCTTGAGTCTTGCTTTGTTCGACAAAGCAGGGTGAAAGATCATCGACAAATCGTCAAAAGTTTTACGGAAAAAATACTCCAAGCG CCCAAGTA TACGTGTGAAAAAGCGTGGAAAGCTTAAAATATCAACCTCAGATTGCTGCATTCGGTGATAAATTAGGTAGTTCCAACGTGCTTAACTCAGTGTTGGAAGACAATCGTAATCCACAGCCAACCAAAGCCAGTGTGCGTGTGTGCCATTTGAAAAGTCACTTTCACTTTGTTTGACCGAGAAAGTGTGCTCCGGAACGTTTGTACGGGGTGTGACACAACGAAAAGCAGCAGCTTCTTTAAAAAACCCTCCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATTCAGGAGCTGAATTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTT GGTCCCG ] [+] EMBL BM576967 [ ccgACAGTTTTATGCTTTTTGCTGCTGTTTCTGTTTGCAATAATCCAAGTTTTTACAAATATTTCGGAATGTATAGAAAAATCTACTGCTAGCAGCTAGCAACACCTGCGCGCACAGTGCTGATTCGAAAACGGTACCAGCTCACACTGAATTTTGACTGCTCCTTCCCTGCCGCAGCCCTTCCGTCCTCTATCCCTTGAGTCTTGCTTTGTTCGACAAAGCAGGGTGAAAGATCGTCGACAAATCGTCAAAGGCTTTACGGAAACAATACTCCAAGCG CCCGAGTA TTCGTGTGAAAAAGCGTGGAAAGCTTAAAATATCAACCTCAGATTGCTGCATTCGGTGATAAATTAGGTAGTTCCAAC GCTTAACTCAGTGTTGGAAGACAATCGTAATCGACAGCCAACCAAAGCCAGTGTGCGTGTGTGCCATTTGAAAAGTCACTTTCACTTTGGTTGACCGAGAAAGTGTGCTCCGGAACGTTTGTACGGGGTGTGACACAACGAAAAGCAGCAGCTTCTTTAAAAAACCCTCCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATTCAGGAGCTGAGTTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTTGGGTCCCG CTCGTGCCATTATCGCTCCGCACGCCGGATATCGCT ] [+] EMBL BX625978 [ ATCCAAGTTTTTACAAATATTTCGGAATGTATAGAAAAATCTACTGCTAGCAGCTAGCAACACCTGCGCGCACAGTGCTGATTCGAAAACGGTACCAGCTCACACTGAATTTTGACTGCTCCTTCCCTGCCGCAGCCCTTCCGTCCTCTATCCCTTGAGTCTTGCTTTGTTCGACAAAGCAGGGTGAAAGATCATCGACAAATCGTCAAAAGTTTTGCGGAAAAAATACTCCAAGCGCCCCGAGTATTCCGTGTGAAAAAGCGTGGAAAGCTTAAAAT ] [+] EMBL BM585993 [ ccgAGCAGGGTGAAAGATCATCGACAAATCGTCAAAAGTTTTACGGAAAAAATACTCCAAGCG CCCAAGTA TACGTGTGAAAAAGCGTGGAAAGCTTAAAATATCAACCTCAGATTGCTGCATTCGGTGATAAATTAGGTAGTTCCAACGTGCTTAACTCAGTGTTGGAAGACAATCGTAATCCACAGCCAACCAAAGCCAGTGTGCGTGTGTGCCATTTGAAAAGTCACTTTCACTTTGTTTGACCGACAAAGTGTGCTCCGGAACGTTTGTACGGGGTGTGACACAACGAAAAGCAGCAGCTTCTTTAAAAAACCCTCCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATTCAGGAGCTGAATTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTT GGTCCCG CTCGTGCCATTATCGCTCCGCACGCCGGATATCGCTATTGCGGTGCCTG ] [+] EMBL AL694766 [ cccgaggtAAATATCAACCTCAGATTGCTGCATTCGGTGATAAATTAGGTAGTTCCAACGTGCTTAACTCAGTGTTGGAAGACAATCGTAATCCACAGCCAACCAAAGCCAGTGTGCGTGTGTGCCATTTGAAAAGTCACTTTCACTTTGTTTGACCGAGAAAGTGTGCTCCGGAACGTTTGTACGGGGTGTGACACAACGAAAAGCAGCAGCTTCTTTAAAAAACCCTCCTTCAAAATGCCAAATTCGAATCGTTTGG CACGCATGCTGGTAGCTGGTACACGGATTCAGGAGCTGAGTTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTT GGTCCCGACTCGTGCCATTATCGCTCCGCACGCCGGATATCGCTATTGCGGTGCCTGCGGTGCTTGGGCTTATCGGCAAATTAGTCCCGCCGTGGTAAAACGTGTGTTCATTTTGGGCCCTTCGCATCATGTGCGTCTGTCCCGTTGCGCCCTATCGGTGTTCAGTACTGCAATACAGCCCTTGTATNACCTGAAAGTGGATCAGCAAATCAACAACAGTGGGAAAGTACCGGCATTTCAAGTGGCATGGACCAAAAGACGGACGAAGACGAGCATAGCATCGAAATGCATCTTCCCTA] consensusID : consensus_7504#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 785 fasta sequence [GCAGATTCGGCACGATGGAAAGCAGCAGCTTCTTTAAAAAACCTCCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATTCAGGAGCTGAGTTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTTGGTCCCGCTCGTGCCATTATCGCTCCGCACGCCGGATATCGCTATTGCGGTGCCTGCGGTGCTTGGGCTTATCGGCAAATTAGTCCCGCCGTGGTAAAACGTGTGTTCATTTTGGGCCCTTCGCATCATGTGCGTCTGTCCCGTTGCGCCCTATCGGCTGTTCAGTACTGCAATACGCCCTTGTATAACCTGAAAGTGGATCAGAAATCAACCAACAGCTGGAAAGTACCCGGGCCATTTTCAAGTGGGATGGAGCCAAAAGACGGACGAAGACGANGCATAGCATCGAAATGCATCTTCCCTACGTGGCTTAAAGTGATGGGAAGGACTATAAAGATCAGGTTTACCATCGGTACCGGGTGATAGGTTGGCTCCCATTACCCCAATGAAATTGGGCAAGAGAACCTATGGGNAAAAATCTTTTCTGCACCCGGTACCCTTGTCGTTGACCCCACAGGAATTTGTTNCGGCAAAATTTCGGTCCGGAAGTTTTTGCCACCTGAGGGCCAAACGAGTTTTCGCTTACAACCATTAACCTAACGAAGGAAAAGGGTCCCGGNTCCGGATGCTTACCAAATGGGATTCGGAAAACGCTNGNCCAAAATCGGGCGATGGNATTTTG] [+] EMBL BX467815 [GCAGATTCGGCACGATGGAAAGCAGCAGCTTCTTTAAAAAACCTCCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATTCAGGAGCTGAGTTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTTGGTCCCGCTCGTGCCATTATCGCTCCGCACGCCGGATATCGCTATTGCGGTGCCTGCGGTGCTTGGGCTTATCGGCAAATTAGTCCCGCCGTGGTAAAACGTGTGTTCATTTTGGGCCCTTCGCATCATGTGCGTCTGTCCCGTTGCGCCCTATCGGCTGTTCAGTACTGCAATACGCCCTTGTATAACCTGAAAGTGGATCAGAAATCAACCAACAGCTGGAAAGTACCCGGGCCATTTTCAAGTGGGATGGAGCCAAAAGACGGACGAAGACGANGCATAGCATCGAAATGCATCTTCCCTACGTGGCTTAAAGTGATGGGAAGGACTATAAAGATCAGGTTTACCATCGGTACCGGGTGATAGGTTGGCTCCCATTACCCCAATGAAATTGGGCAAGAGAACCTATGGGNAAAAATCTTTTCTGCACCCGGTACCCTTGTCGTTGACCCCACAGGAATTTGTTNCGGCAAAATTTCGGTCCGGAAGTTTTTGCCACCTGAGGGCCAAACGAGTTTTCGCTTACAACCATTAACCTAACGAAGGAAAAGGGTCCCGGNTCCGGATGCTTACCAAATGGGATTCGGAAAACGCTNGNCCAAAATCGGGCGATGGNATTTTG] consensusID : consensus_7504#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [CCGCGGACGCGTGGGAAGATCGTCGACAAATCGTCAAAGGCTTTACGGAAACAATACTCCAAGCGCCCGAGTATTCGTGTGAAAAAGCGTGGAAAGCTTAAAATATCAACCTCAGATTGCTGCATTCGGTGATAAATTAGGTAGTTCCAACGCTTAACTCAGTGTTGGAAGACAATCGTAATCGACAGCCAACCAAAGCCAGTGTGCGTGTGTGCCATTTGAAAAGTCACTTTCACTTTGTTTGACCGAGAAAGTGTGCTCCGGAACGTTTGTACGGGGTGTGACACAACGAAAAGCAGCAGCTTCTTTAAAAAACCCTCCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATTCAGGAGCTGAGTTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTTGGTCCCGCTCGTGCCATTATCGCTCCGCACGCCGGATATCGCTACTGTGGTGCCTGCGGTGCTTGGGCTTATCGGCAAATTAGTCCCGCCGTGGTAAAAACGTGTGTTCATTTTTGGGGCCCTTCGCA] [+] EMBL BM608918 [CCGCGGACGCGTGGGAAGATCGTCGACAAATCGTCAAAGGCTTTACGGAAACAATACTCCAAGCGCCCGAGTATTCGTGTGAAAAAGCGTGGAAAGCTTAAAATATCAACCTCAGATTGCTGCATTCGGTGATAAATTAGGTAGTTCCAACGCTTAACTCAGTGTTGGAAGACAATCGTAATCGACAGCCAACCAAAGCCAGTGTGCGTGTGTGCCATTTGAAAAGTCACTTTCACTTTGTTTGACCGAGAAAGTGTGCTCCGGAACGTTTGTACGGGGTGTGACACAACGAAAAGCAGCAGCTTCTTTAAAAAACCCTCCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATTCAGGAGCTGAGTTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTTGGTCCCGCTCGTGCCATTATCGCTCCGCACGCCGGATATCGCTACTGTGGTGCCTGCGGTGCTTGGGCTTATCGGCAAATTAGTCCCGCCGTGGTAAAAACGTGTGTTCATTTTTGGGGCCCTTCGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7504#0 CCGTAATCACAGTTTTATGCTTTTTGCTGCTGTTTCTGTTTGCAATAATCCAAGTTTTTA 60 consensus_7504#2 ------------------------------------------------------------ consensus_7504#1 ------------------------------------------------------------ consensus_7504#0 CAAATATTTCGGAATGTATAGAAAAATCTACTGCTAGCAGCTAGCAACACCTGCGCGCAC 120 consensus_7504#2 ------------------------------------------------------------ consensus_7504#1 ------------------------------------------------------------ consensus_7504#0 AGTGCTGATTCGAAAACGGTACCAGCTCACACTGAATTTTGACTGCTCCTTCCCTGCCGC 180 consensus_7504#2 ------------------------------------------------------------ consensus_7504#1 ------------------------------------------------------------ consensus_7504#0 AGCCCTTCCGTCCTCTATCCCTTGAGTCTTGCTTTGTTCGACAAAGCAGGGTGAAAGATC 240 consensus_7504#2 -------------------------------------CCGCGGACGCGTGG--GAAGATC 21 consensus_7504#1 ------------------------------------------------------------ consensus_7504#0 ATCGACAAATCGTCAAAAGTTTTACGGAAAAAATACTCCAAGCGCCCAAGTATACGTGTG 300 consensus_7504#2 GTCGACAAATCGTCAAAGGCTTTACGGAAACAATACTCCAAGCGCCCGAGTATTCGTGTG 81 consensus_7504#1 ------------------------------------------------------------ consensus_7504#0 AAAAAGCGTGGAAAGCTTAAAATATCAACCTCAGATTGCTGCATTCGGTGATAAATTAGG 360 consensus_7504#2 AAAAAGCGTGGAAAGCTTAAAATATCAACCTCAGATTGCTGCATTCGGTGATAAATTAGG 141 consensus_7504#1 ------------------------------------------------------------ consensus_7504#0 TAGTTCCAACGTGCTTAACTCAGTGTTGGAAGACAATCGTAATCCACAGCCAACCAAAGC 420 consensus_7504#2 TAGTTCCAACG--CTTAACTCAGTGTTGGAAGACAATCGTAATCGACAGCCAACCAAAGC 199 consensus_7504#1 ------------------------------------------------------------ consensus_7504#0 CAGTGTGCGTGTGTGCCATTTGAAAAGTCACTTTCACTTTGTTTGACCGAGAAAGTGTGC 480 consensus_7504#2 CAGTGTGCGTGTGTGCCATTTGAAAAGTCACTTTCACTTTGTTTGACCGAGAAAGTGTGC 259 consensus_7504#1 ------------------------------------------------------------ consensus_7504#0 TCCGGAACGTTTGTACGGGGTGTGACACAACGAAAAGCAGCAGCTTCTTTAAAAAACCCT 540 consensus_7504#2 TCCGGAACGTTTGTACGGGGTGTGACACAACGAAAAGCAGCAGCTTCTTTAAAAAACCCT 319 consensus_7504#1 ---------------GCAGATTCGGCACGATGGAAAGCAGCAGCTTCTTTAAAAAACC-T 44 * * * *** * * ************************* * consensus_7504#0 CCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATT 600 consensus_7504#2 CCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATT 379 consensus_7504#1 CCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATT 104 ************************************************************ consensus_7504#0 CAGGAGCTGAATTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTTG 660 consensus_7504#2 CAGGAGCTGAGTTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTTG 439 consensus_7504#1 CAGGAGCTGAGTTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTTG 164 ********** ************************************************* consensus_7504#0 GTCCCGCTCGTGCCATTATCGCTCCGCACGCCGGATATCGCTATTGCGGTGCCTGCGGTG 720 consensus_7504#2 GTCCCGCTCGTGCCATTATCGCTCCGCACGCCGGATATCGCTACTGTGGTGCCTGCGGTG 499 consensus_7504#1 GTCCCGCTCGTGCCATTATCGCTCCGCACGCCGGATATCGCTATTGCGGTGCCTGCGGTG 224 ******************************************* ** ************* consensus_7504#0 CTTGGGCTTATCGGCAAATTAGTCCCGCCGTGGTAAAA-CGTGTGTTCATTTT--GGGCC 777 consensus_7504#2 CTTGGGCTTATCGGCAAATTAGTCCCGCCGTGGTAAAAACGTGTGTTCATTTTTGGGGCC 559 consensus_7504#1 CTTGGGCTTATCGGCAAATTAGTCCCGCCGTGGTAAAA-CGTGTGTTCATTTT--GGGCC 281 ************************************** ************** ***** consensus_7504#0 CTTCGCATCATGTGCGTCTGTCCCGTTGCGCCCTATCGG-TGTTCAGTACTGCAATACAG 836 consensus_7504#2 CTTCGCA----------------------------------------------------- 566 consensus_7504#1 CTTCGCATCATGTGCGTCTGTCCCGTTGCGCCCTATCGGCTGTTCAGTACTGCAATAC-G 340 ******* consensus_7504#0 CCCTTGTATNACCTGAAAGTGGATCAGCAAATCAACAACAGTGGGAAAGTACCGGCA--- 893 consensus_7504#2 ------------------------------------------------------------ consensus_7504#1 CCCTTGTATAACCTGAAAGTGGATCAGAAATCAACCAACAGCTGGAAAGTACCCGGGCCA 400 consensus_7504#0 -TTTCAAGTGGCATGGA-CCAAAAGACGGACGAAGACGAG-CATAGCATCGAAATGCATC 950 consensus_7504#2 ------------------------------------------------------------ consensus_7504#1 TTTTCAAGTGGGATGGAGCCAAAAGACGGACGAAGACGANGCATAGCATCGAAATGCATC 460 consensus_7504#0 TTCCCTA----------------------------------------------------- 957 consensus_7504#2 ------------------------------------------------------------ consensus_7504#1 TTCCCTACGTGGCTTAAAGTGATGGGAAGGACTATAAAGATCAGGTTTACCATCGGTACC 520 consensus_7504#0 ------------------------------------------------------------ consensus_7504#2 ------------------------------------------------------------ consensus_7504#1 GGGTGATAGGTTGGCTCCCATTACCCCAATGAAATTGGGCAAGAGAACCTATGGGNAAAA 580 consensus_7504#0 ------------------------------------------------------------ consensus_7504#2 ------------------------------------------------------------ consensus_7504#1 ATCTTTTCTGCACCCGGTACCCTTGTCGTTGACCCCACAGGAATTTGTTNCGGCAAAATT 640 consensus_7504#0 ------------------------------------------------------------ consensus_7504#2 ------------------------------------------------------------ consensus_7504#1 TCGGTCCGGAAGTTTTTGCCACCTGAGGGCCAAACGAGTTTTCGCTTACAACCATTAACC 700 consensus_7504#0 ------------------------------------------------------------ consensus_7504#2 ------------------------------------------------------------ consensus_7504#1 TAACGAAGGAAAAGGGTCCCGGNTCCGGATGCTTACCAAATGGGATTCGGAAAACGCTNG 760 consensus_7504#0 ------------------------- consensus_7504#2 ------------------------- consensus_7504#1 NCCAAAATCGGGCGATGGNATTTTG 785 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||